BAC Information

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BAC

Clone NameB6Ng01-107G12
Chromosome9 (Build37)10 (Build37)
Map Location 97,945,296 - 97,945,459121,823,085 - 121,823,457
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc25a36, EG622727, LOC384971, Trim42, Clstn2
Downstream geneLOC667298, Nmnat3, Rbp1, Rbp2, 4930579K19Rik, Copb2, Mrps22, EG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107G12.bB6Ng01-107G12.g
ACCDH914883DH914884
length184367
definitionDH914883|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G12, 5' end.DH914884|Mus musculus domesticus DNA, BAC clone: B6Ng01-107G12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(97,945,296 - 97,945,459)(121,823,085 - 121,823,457)
sequence
tttcataggattcacctaagactatcagaaaacacagatatttacgttat
attatgattcattacagtagcaagattacagttaggaagtagcaacaaaa
ataatttcacagttgaaggtcaccgccatatgctgaggaactacatcaat
gggttgcagcattaaggaaggttgagaaccactg
agaataaacttggacctgatgaaggtgtagatttaatacaactaagaagc
attgcatctcagtaggtgttgtccagatatagtacactgtgcattttcat
tagattgatagatttcaggccaggggaagatctgaatgtttgagaaaaat
tatcttattttgttcaaattgtatacgttttaatcaatgttctaatgctg
tgaacagacaccataaccatggcaactcttatcaaggacaacatttaatt
gggactggcttacaggttcagaggttcagacccttattatcctggcaggg
atcatggcagcacacttgatgctggagcggtagctgagagcaacatcctg
acaagcaagtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_97945296_97945459
seq2: B6Ng01-107G12.b_63_235 (reverse)

seq1  CAGTGGTTCTCAACCTTCC-TAATGCTGTGACCC-TTTATGCAGTTCCT-  47
      ||||||||||||||||||| ||||||||  |||| || ||| ||||||| 
seq2  CAGTGGTTCTCAACCTTCCTTAATGCTGCAACCCATTGATGTAGTTCCTC  50

seq1  --CGTCTTGTGGTGACACCCCAACCGCAATGTTATTTTGGTTGCTGTGTC  95
        | | | | |||||| |  |||| |  |  ||||||| ||||||   ||
seq2  AGCATATGGCGGTGAC-CTTCAACTGTGAAATTATTTTTGTTGCTACTTC  99

seq1  ATAACTGTAATTTTACTCCTGTTGTGAACAGTAATA-----TAAATATCT  140
       |||||||||| || || ||||  ||||   |||||     |||||||||
seq2  CTAACTGTAATCTTGCTACTGTAATGAATCATAATATAACGTAAATATCT  149

seq1  GTATTTTCTGATAGTCTTAGGTGA  164
      || |||||||||||||||||||||
seq2  GTGTTTTCTGATAGTCTTAGGTGA  173

seq1: chr10_121823085_121823457
seq2: B6Ng01-107G12.g_67_439 (reverse)

seq1  CACACACACTTGCTTGTCAGGATGTTGCTCTCAGCTACCGCTCCAGCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACTTGCTTGTCAGGATGTTGCTCTCAGCTACCGCTCCAGCATC  50

seq1  AAGTGTGCTGCCATGATCCCTGCCAGGATAATAAGGGTCTGAACCTCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGCTGCCATGATCCCTGCCAGGATAATAAGGGTCTGAACCTCTGA  100

seq1  ACCTGTAAGCCAGTCCCAATTAAATGTTGTCCTTGATAAGAGTTGCCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTAAGCCAGTCCCAATTAAATGTTGTCCTTGATAAGAGTTGCCATG  150

seq1  GTTATGGTGTCTGTTCACAGCATTAGAACATTGATTAAAACGTATACAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGTGTCTGTTCACAGCATTAGAACATTGATTAAAACGTATACAAT  200

seq1  TTGAACAAAATAAGATAATTTTTCTCAAACATTCAGATCTTCCCCTGGCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACAAAATAAGATAATTTTTCTCAAACATTCAGATCTTCCCCTGGCC  250

seq1  TGAAATCTATCAATCTAATGAAAATGCACAGTGTACTATATCTGGACAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATCTATCAATCTAATGAAAATGCACAGTGTACTATATCTGGACAAC  300

seq1  ACCTACTGAGATGCAATGCTTCTTAGTTGTATTAAATCTACACCTTCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACTGAGATGCAATGCTTCTTAGTTGTATTAAATCTACACCTTCATC  350

seq1  AGGTCCAAGTTTATTCTGAATTC  373
      |||||||||||||||||||||||
seq2  AGGTCCAAGTTTATTCTGAATTC  373