BAC Information

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BAC

Clone NameB6Ng01-108B24
Chromosome9 (Build37)
Map Location 5,164,400 - 5,165,527
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC384912, LOC100039253, Aasdhppt, Kbtbd3, LOC664860, 8430410K20Rik, Gria4, EG664889
Downstream geneCasp1, Casp4, Casp12, LOC547033, LOC100039361, LOC100039372, LOC664957, LOC676037
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108B24.bB6Ng01-108B24.g
ACCDH915391DH915392
length1,0721,099
definitionDH915391|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B24, 5' end.DH915392|Mus musculus domesticus DNA, BAC clone: B6Ng01-108B24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagcaagcttgaaagatggggtgggggaagaaaatctaaccta
tttggttcatgaattccaggtctgatgaaggtgggcaaggaggttggggg
tgaatggaagtccaccaggataacagattgatctggtaagctgagggccc
cagactagtacttgtctccttccaatcaccactgattcttctctcccaac
tgaccagaaccacagattctgagtacaaaatagcaagtgatcccttatag
agtcttttttccttctgaaacttcacaagatagacccacttccctgcagt
ggtctcagcattatccactaatcttcaaatttattttaacaactcaccaa
gctttcaaaattcaatggctttttcatcctacaattccaaaacccttctg
caggtcacctgaaatcaagtggcaaggtgtgtcacaatatcctactactg
gtatcagtttctgacatagttatggttattattgcagggatgatacaaca
tgaccaaaagcaatgtggggatttatttggcttacatatattttactgta
gtcaactgaaggaagccaaggaaggaagcaagaatctaaaaacagaatct
gacacagagtccatggaggaatgatatttactggcttgctcctcatggct
tgctcagcttgctttcttctagatctcagaaccattataaaaccatgcac
aataatctgggccttaatatatcaattattaaagcccagtctcatgaagg
cataatatgatcaccctcctcacaaatgacagactatagtttgtgtcagg
ttgacttagaatttagacaatagtgacttctaaaacatgaaaaaggagct
atacctatgaaatctcaatgctatgataactaaacaagaactgaaaatta
ttataccagttgatatgtgtcctagttagggttttactgctgtgaacaga
caccatgaccaaggcaactcttataaaaacaacattaattgggctggctt
acagaattcagaggtcagtccattatcatcaagtaggaagcattaaaggc
ctccaggtgggggcattgtgca
gaattcacgacaatacatgtttggttttgtattcaatccctctctatttc
cctttctcacagcaaacaaggaagagttactacaatgtttctttattcca
aatagttgacatgaaaatgaaaataagtaaagatgaaggtttttaactaa
aaaatatataatgtttctatgttttcaccagaggactgggagtctctggt
atcttagagagcccatccattattaacacctatctcaacaaggagtagta
accaaaaggccttttcttgtgtcaagacttagaatacccagaactactct
gactgttaaattaagaactaatttagtacaattagcatgtatttatattt
gcaaataattgacattatattgttttacaaacatgaaggtatattaatgc
tgaagatcccagttggagttctacacaatatacagtatttcttctttaca
aacccctcccttaccacagggaaagacattagttgagtctatgctgagca
cttgacgaaagctgtatcaaaggatttccctagggacttttgaatggaga
aagttcctctaagtacatttgtatgcaaaacacagatgctcataatttta
aactttctgttctgcattgcatgtgagccacaggttaaatgcacacaaaa
acacacagcagtgaaccatgcctgtgatttcctaaaatcagccaggggct
atggaagagaatccagacaactttggaggtggctgattgctcaaaatgtc
tgtgttctcacttctaacatctctgagtttattttaaactaaggcattta
cttcccatttatctggcttaattagccaattccaatcaagatgtatttag
atagtaaattccaggtgtgcctaggtagccttttgatcaatagcctttca
gcatagcttaaagtctcaacctatgatttgagcaaattacccacttattt
taagtgttttcaacagttaactgagagtaagactgctcatattctgagat
attactgtctgctgcgtgaagtcagctttacagctttctagctagatgag
ttttaaggtcctagtttgtggctaatatgtaatatgctgttactggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_5164400_5165527
seq2: B6Ng01-108B24.g_64_1162 (reverse)

seq1  GAACGCAGTAACAAGCCAATTATTACCAATATTAGCCACAAACTAGGGAA  50
      |||| ||||||| |||    ||||||  |||||||||||||||||||  |
seq2  GAAC-CAGTAAC-AGC---ATATTAC--ATATTAGCCACAAACTAGG--A  41

seq1  CTTTAAAAACTTCATCCTTAGCTTAGAAAGGCTGGTAAAAGCTGACTTCA  100
      | ||||||   |||||  |||| |||||| ||||   |||||||||||| 
seq2  CCTTAAAA--CTCATC--TAGC-TAGAAA-GCTG--TAAAGCTGACTTC-  82

seq1  ACGCAGCAGACAGTAATATTCCTCAGGAATATGAACCAGGTCTTTAACTC  150
      |||||||||||||||||||  |||| |||||||| |   |||||  ||||
seq2  ACGCAGCAGACAGTAATAT--CTCA-GAATATGAGC--AGTCTT--ACTC  125

seq1  TCAGTTAACTGTTGAAAACACTTAAAAATTAAGTGGGTAATTTGCTCAAA  200
      |||||||||||||||||||||||||||  |||||||||||||||||||||
seq2  TCAGTTAACTGTTGAAAACACTTAAAA--TAAGTGGGTAATTTGCTCAAA  173

seq1  TCATAGGTTTGAGACTTTAAGCTATGCCTGAAAGGCTATTGATCAAAAGG  250
      ||||||| |||||||||||||||||| |||||||||||||||||||||||
seq2  TCATAGG-TTGAGACTTTAAGCTATG-CTGAAAGGCTATTGATCAAAAGG  221

seq1  CTACCTAGGCACACCTGGAATTTACTATCTAAATACATCTTGATTGGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTAGGCACACCTGGAATTTACTATCTAAATACATCTTGATTGGAAT  271

seq1  TGGCTAATTAAGCCAGATAAATGGGAAGTAAATGCCTTAGTTTAAAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTAATTAAGCCAGATAAATGGGAAGTAAATGCCTTAGTTTAAAATAA  321

seq1  ACTCAGAGATGTTAGAAGTGAGAACACAGACATTTTGAGCAATCAGCCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAGATGTTAGAAGTGAGAACACAGACATTTTGAGCAATCAGCCAC  371

seq1  CTCCAAAGTTGTCTGGATTCTCTTCCATAGCCCCTGGCTGATTTTAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGTTGTCTGGATTCTCTTCCATAGCCCCTGGCTGATTTTAGGAA  421

seq1  ATCACAGGCATGGTTCACTGCTGTGTGTTTTTGTGTGCATTTAACCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGCATGGTTCACTGCTGTGTGTTTTTGTGTGCATTTAACCTGTG  471

seq1  GCTCACATGCAATGCAGAACAGAAAGTTTAAAATTATGAGCATCTGTGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACATGCAATGCAGAACAGAAAGTTTAAAATTATGAGCATCTGTGTT  521

seq1  TTGCATACAAATGTACTTAGAGGAACTTTCTCCATTCAAAAGTCCCTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATACAAATGTACTTAGAGGAACTTTCTCCATTCAAAAGTCCCTAGG  571

seq1  GAAATCCTTTGATACAGCTTTCGTCAAGTGCTCAGCATAGACTCAACTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCTTTGATACAGCTTTCGTCAAGTGCTCAGCATAGACTCAACTAA  621

seq1  TGTCTTTCCCTGTGGTAAGGGAGGGGTTTGTAAAGAAGAAATACTGTATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTCCCTGTGGTAAGGGAGGGGTTTGTAAAGAAGAAATACTGTATA  671

seq1  TTGTGTAGAACTCCAACTGGGATCTTCAGCATTAATATACCTTCATGTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTAGAACTCCAACTGGGATCTTCAGCATTAATATACCTTCATGTTT  721

seq1  GTAAAACAATATAATGTCAATTATTTGCAAATATAAATACATGCTAATTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACAATATAATGTCAATTATTTGCAAATATAAATACATGCTAATTG  771

seq1  TACTAAATTAGTTCTTAATTTAACAGTCAGAGTAGTTCTGGGTATTCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAATTAGTTCTTAATTTAACAGTCAGAGTAGTTCTGGGTATTCTAA  821

seq1  GTCTTGACACAAGAAAAGGCCTTTTGGTTACTACTCCTTGTTGAGATAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGACACAAGAAAAGGCCTTTTGGTTACTACTCCTTGTTGAGATAGG  871

seq1  TGTTAATAATGGATGGGCTCTCTAAGATACCAGAGACTCCCAGTCCTCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAATAATGGATGGGCTCTCTAAGATACCAGAGACTCCCAGTCCTCTG  921

seq1  GTGAAAACATAGAAACATTATATATTTTTTAGTTAAAAACCTTCATCTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAACATAGAAACATTATATATTTTTTAGTTAAAAACCTTCATCTTT  971

seq1  ACTTATTTTCATTTTCATGTCAACTATTTGGAATAAAGAAACATTGTAGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTTTCATTTTCATGTCAACTATTTGGAATAAAGAAACATTGTAGT  1021

seq1  AACTCTTCCTTGTTTGCTGTGAGAAAGGGAAATAGAGAGGGATTGAATAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTTCCTTGTTTGCTGTGAGAAAGGGAAATAGAGAGGGATTGAATAC  1071

seq1  AAAACCAAACATGTATTGTCGTGAATTC  1128
      ||||||||||||||||||||||||||||
seq2  AAAACCAAACATGTATTGTCGTGAATTC  1099