BAC Information

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BAC

Clone NameB6Ng01-108M13
Chromosome9 (Build37)
Map Location 89,212,452 - 89,342,021
singlet/doubletdoublet
Overlap genenone
Upstream geneNt5e, Snx14, LOC100039601, Syncrip, 2810026P18Rik, 4930422I07Rik, EG547109, LOC100039707, LOC100039721, Bcl2a1d, LOC100039674, EG666731, LOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs
Downstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108M13.bB6Ng01-108M13.g
ACCDH915876DH915877
length1,103224
definitionDH915876|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M13, 5' end.DH915877|Mus musculus domesticus DNA, BAC clone: B6Ng01-108M13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,340,896 - 89,342,021)(89,212,452 - 89,212,675)
sequence
gaattctggaagtcccccccccagttgccttttttaattaatattttaat
ttttagattaatttattattttatgtgcatgagtgttttgcctgattgtc
tgtgcaccacatgcatgcatagtgcccatagaggtcagaagagggcattg
gattccctgggaaaggagttaaagatggctgtgagtcaccatgtggatgc
tgggaatccaacatgggtccccaggaagaacaaccagtgctcttacccac
agagccaaccagccctcacatttcctttttgagaattttccaagttgccc
taatactcaagggaaatcacttatttaggtcttcattaaaggcaatgttc
ccttcagattctttagggagatggtaatatttctcagttgctaactttgc
cagaagtttagaggacaaggtcagatgttatttgggtcttttgataacaa
tgattcttattccaaggtcagaaagctaaggacagagctcttatacctgc
taaatatatccatcccaattatatactcaaacaccagaaatacaatggct
acaatgatcctttgggcccaatctatgcagcaggggccagaattccattc
atcatctgatttctataggctgttactgtgacaagtgcctacgaatcctt
ctgagatagaattagaagtatctatggaaaatgcttacaggaactttttg
aaggggacctcatctcaccttcagtcactgaattctgtcttggatctgga
agctacattgcagatcctgaccttccatcccaatagctgatatcagcctt
actctgctgggatattagttttgttttgatttttttttaaagtcaagcca
ctcttttactactcttccaccttacccaacaggacacagtgatgccatga
gaccaagcagctttgttgctatcctgacgtccagaacagaaatttacctt
ccttactggttagcaaagctactactcacccttgctatttcagaagaatc
tgtcattctgtgatgatgacactcatgaaacctccagtcatcatctaggt
ctgaatagctctactattagagtattgtaaagtgtatttttattgcttaa
tga
atgtggaaactgtagtgacacaaaatctgttgtgttcgtctaaaagaaat
ggactgactaaattctgtagaggcccctccagtagagtcatgtcttttcc
tggagcatccctcaacttgagagtggatgtagtgcctagtttccaagacc
aaggaggtttctggcaagctactggcaagaaaaatcaggacatgtcttgg
gtggggggctggtggggaggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89340896_89342021
seq2: B6Ng01-108M13.b_48_1150 (reverse)

seq1  TCATTAAGCCAATAAAAATACACTTTAACAATAACTCTAATAGTAGAGCT  50
      |||||||| ||||||||||||||||| ||||| |||||||||||||||||
seq2  TCATTAAG-CAATAAAAATACACTTT-ACAAT-ACTCTAATAGTAGAGCT  47

seq1  TATTTCAGACCCTAGAATGGATGACCTTGGAGGTTTCATGAAGTTGGTTC  100
         |||||| ||||||   ||||||  ||||||||||||||     ||  
seq2  --ATTCAGA-CCTAGA--TGATGAC--TGGAGGTTTCATGA-----GTGT  85

seq1  CATCATTCCAACAAGAATGACAAGATTTCTTCTGAAATAGCAAGGGTTGA  150
      ||||||  |    |||||||| ||| |||||||||||||||||||| |||
seq2  CATCATCAC----AGAATGAC-AGA-TTCTTCTGAAATAGCAAGGG-TGA  128

seq1  GTAGTAGCTTTGCTAACCAAGTAAGGAAGGTAAATTTCTGTTCTGGACGT  200
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GTAGTAGCTTTGCTAACC-AGTAAGGAAGGTAAATTTCTGTTCTGGACGT  177

seq1  CAGGATAGCAACAAAGCTGCTTGGTCTCATGGCATCACTGTGTCCTGTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATAGCAACAAAGCTGCTTGGTCTCATGGCATCACTGTGTCCTGTTG  227

seq1  GGTAAGGTGGAAGAGTAGTAAAAGAGTGGCTTGACTTTAAAAAAAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAGGTGGAAGAGTAGTAAAAGAGTGGCTTGACTTTAAAAAAAAATCA  277

seq1  AAACAAAACTAATATCCCAGCAGAGTAAGGCTGATATCAGCTATTGGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACTAATATCCCAGCAGAGTAAGGCTGATATCAGCTATTGGGAT  327

seq1  GGAAGGTCAGGATCTGCAATGTAGCTTCCAGATCCAAGACAGAATTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGTCAGGATCTGCAATGTAGCTTCCAGATCCAAGACAGAATTCAGT  377

seq1  GACTGAAGGTGAGATGAGGTCCCCTTCAAAAAGTTCCTGTAAGCATTTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAAGGTGAGATGAGGTCCCCTTCAAAAAGTTCCTGTAAGCATTTTC  427

seq1  CATAGATACTTCTAATTCTATCTCAGAAGGATTCGTAGGCACTTGTCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGATACTTCTAATTCTATCTCAGAAGGATTCGTAGGCACTTGTCACA  477

seq1  GTAACAGCCTATAGAAATCAGATGATGAATGGAATTCTGGCCCCTGCTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAGCCTATAGAAATCAGATGATGAATGGAATTCTGGCCCCTGCTGC  527

seq1  ATAGATTGGGCCCAAAGGATCATTGTAGCCATTGTATTTCTGGTGTTTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATTGGGCCCAAAGGATCATTGTAGCCATTGTATTTCTGGTGTTTGA  577

seq1  GTATATAATTGGGATGGATATATTTAGCAGGTATAAGAGCTCTGTCCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATATAATTGGGATGGATATATTTAGCAGGTATAAGAGCTCTGTCCTTA  627

seq1  GCTTTCTGACCTTGGAATAAGAATCATTGTTATCAAAAGACCCAAATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTCTGACCTTGGAATAAGAATCATTGTTATCAAAAGACCCAAATAAC  677

seq1  ATCTGACCTTGTCCTCTAAACTTCTGGCAAAGTTAGCAACTGAGAAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACCTTGTCCTCTAAACTTCTGGCAAAGTTAGCAACTGAGAAATAT  727

seq1  TACCATCTCCCTAAAGAATCTGAAGGGAACATTGCCTTTAATGAAGACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATCTCCCTAAAGAATCTGAAGGGAACATTGCCTTTAATGAAGACCT  777

seq1  AAATAAGTGATTTCCCTTGAGTATTAGGGCAACTTGGAAAATTCTCAAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAGTGATTTCCCTTGAGTATTAGGGCAACTTGGAAAATTCTCAAAA  827

seq1  AGGAAATGTGAGGGCTGGTTGGCTCTGTGGGTAAGAGCACTGGTTGTTCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATGTGAGGGCTGGTTGGCTCTGTGGGTAAGAGCACTGGTTGTTCT  877

seq1  TCCTGGGGACCCATGTTGGATTCCCAGCATCCACATGGTGACTCACAGCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGGGGACCCATGTTGGATTCCCAGCATCCACATGGTGACTCACAGCC  927

seq1  ATCTTTAACTCCTTTCCCAGGGAATCCAATGCCCTCTTCTGACCTCTATG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTAACTCCTTTCCCAGGGAATCCAATGCCCTCTTCTGACCTCTATG  977

seq1  GGCACTATGCATGCATGTGGTGCACAGACAATCAGGCAAAACACTCATGC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTATGCATGCATGTGGTGCACAGACAATCAGGCAAAACACTCATGC  1027

seq1  ACATAAAATAATAAATTAATCTAAAAATTAAAATATTAATTAAAAAAGGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAAATAATAAATTAATCTAAAAATTAAAATATTAATTAAAAAAGGC  1077

seq1  AACTGGGGGGGGGACTTCCAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  AACTGGGGGGGGGACTTCCAGAATTC  1103

seq1: chr9_89212452_89212675
seq2: B6Ng01-108M13.g_76_299

seq1  ATGTGGAAACTGTAGTGACACAAAATCTGTTGTGTTCGTCTAAAAGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGAAACTGTAGTGACACAAAATCTGTTGTGTTCGTCTAAAAGAAAT  50

seq1  GGACTGACTAAATTCTGTAGAGGCCCCTCCAGTAGAGTCATGTCTTTTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTGACTAAATTCTGTAGAGGCCCCTCCAGTAGAGTCATGTCTTTTCC  100

seq1  TGGAGCATCCCTCAACTTGAGAGTGGATGTAGTGCCTAGTTTCCAAGACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGCATCCCTCAACTTGAGAGTGGATGTAGTGCCTAGTTTCCAAGACC  150

seq1  AAGGAGGTTTCTGGCAAGCTACTGGCAAGAAAAATCAGGACATGTCTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGGTTTCTGGCAAGCTACTGGCAAGAAAAATCAGGACATGTCTTGG  200

seq1  GTGGGGGGCTGGTGGGGAGGGGGA  224
      ||||||||||||||||||||||||
seq2  GTGGGGGGCTGGTGGGGAGGGGGA  224