BAC Information

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BAC

Clone NameB6Ng01-109C16
Chromosome9 (Build37)
Map Location 20,786,311 - 20,947,261
singlet/doubletdoublet
Overlap geneMrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37
Upstream geneOlfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26, Zfp426, 5730601F06Rik, 7030419G21Rik, LOC100041205, 2210010B09Rik, 5730577I03Rik, Fbxl12, Ubl5, Pin1, Olfm2, Col5a3, Rdh8, A230050P20Rik, Angptl6, Ppan, Eif3s4, Dnmt1, Edg5
Downstream genePde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik, Prkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109C16.bB6Ng01-109C16.g
ACCDH916147DH916148
length1,003814
definitionDH916147|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C16, 5' end.DH916148|Mus musculus domesticus DNA, BAC clone: B6Ng01-109C16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(20,946,259 - 20,947,261)(20,786,311 - 20,786,898)
sequence
gaattctgacaatgagagccaggcaaagccaccgggtggggtgcgaggac
aggggagggacagacagacagacagtttgagcttgggattggctagtgga
ggccaacgaagcccatccataccctctgatctgcccgaaggcccgcggcc
atgcctccgccaccttgatgcacttagcgacgccaccgcctccgatgtgg
acaggatgggcgcggcggccacggcccccaaaccccaggcgcacccctgc
cttgccccagcccacttgccctctcaccctgtcacagagcatggtcaata
ccaagcctgagaaggcagaggaggactcagaggaggcaagggagcagaaa
cacaagaccttcgttgaaaaatatgagaaacagatcaagcatttcggtaa
gttcctgcacaaaggctaggttaggagtcaaggccagcaaaaggcttcca
atggcctctgcgacatcttcctaacatcctctcctgcaggcatgctccac
cgctgggatgacagccagaaatacctgtcggacaacgtccacctggtgtg
tgaggaaacggccaactacctggttatctggtgcattgacctggaggtag
aggaggtaagtgtgcccttcccagctgcggggactcccagacactgcgcc
tgctcacgccccgcccacctctttgtcctggcagaaatgtgcactgatgg
agcaggtagctcaccagaccatggtgatgcagtttattctggagctggcc
aagagtctgaaggtcgacccccgagcctgcttccggcagtttttcaccaa
gatcaaggtaatgagctcctgtgtaccaccaggaaatccacagtgcagtg
cgcgatgtcagatatttattagaggggcttgaggtgccacggggatggcc
gtacatatgtatacttgtgtgtgtgtgtatacatacatacatacatacat
acatacatatatatatgtatgtatgtatatgaaagtgtgtggaatgtgga
tgt
gaattcatgctggcactataacctaattgatcacctgtgtttggtgtgtg
accttagaggagaacctatgactgccagtcatcaccactttccttaaaca
gtgtaattcctactgcttggttgcctcctcctcctccttctcttcttcct
ccttcatcttcttcaagacagggtttctctgtgtagccctagctgccctg
gaactcactctgtaaaccaggatggctttgaactcagagaagcatctacc
tttaccgcccaagtgattaagatgtgagctacatcgcccagctctaactg
ctttctaaacatttatccttcaacccatggagaagctcttacccctcttc
aaagcttctttttgtagcaggcagagaccatcacagaaaaccacgatgtt
taaaaggcagagaacaactgacctcaggatgcccagcttcaatccatgtg
cttacggtatacaatccctaccttgaaagctctgggaacatttcagaaga
caggtggaaagactgagagagccagaggaccagggcatctactgagagac
agtgtcagccacttagacagggaagctgcactcaggagacctcaatgaaa
ctgttacttaccagcacaaggacaaccccagctgacagtacggatctggg
tctcccagtaaggagctggggacatggctcagtgggagaacacatgccta
gaacccttcagttgaagtgggggtgggaagggagagtctagtggctctag
accagcattcagaggcagaggcggaaggatgatggatttgaggtctgcct
tgttatgcacaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_20946259_20947261
seq2: B6Ng01-109C16.b_45_1047 (reverse)

seq1  ACATCCACA-TCCACACACGTTTCATATACATACATACATATATATATGT  49
      ||||||||| ||||||||| ||||||||||||||||||||||||||||||
seq2  ACATCCACATTCCACACAC-TTTCATATACATACATACATATATATATGT  49

seq1  ATGTATGTATGTATGTATGTATGTATACACACACACACAAGTATACATAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATGTATGTATGTATGTATGTATACACACACACACAAGTATACATAT  99

seq1  GTACGGCCATCCCCGTGGCACCTCAAGCCCCTCTAATAAATATCTGACAT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACGGCCATCCCCGTGGCACCTCAAGCCCCTCTAATAAATATCTGACAT  149

seq1  CGCGCACTGCACTGTGGATTTCCTGGTGGTACACAGGAGCTCATTACCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGCACTGCACTGTGGATTTCCTGGTGGTACACAGGAGCTCATTACCTT  199

seq1  GATCTTGGTGAAAAACTGCCGGAAGCAGGCTCGGGGGTCGACCTTCAGAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGGTGAAAAACTGCCGGAAGCAGGCTCGGGGGTCGACCTTCAGAC  249

seq1  TCTTGGCCAGCTCCAGAATAAACTGCATCACCATGGTCTGGTGAGCTACC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGCCAGCTCCAGAATAAACTGCATCACCATGGTCTGGTGAGCTACC  299

seq1  TGCTCCATCAGTGCACATTTCTGCCAGGACAAAGAGGTGGGCGGGGCGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCATCAGTGCACATTTCTGCCAGGACAAAGAGGTGGGCGGGGCGTG  349

seq1  AGCAGGCGCAGTGTCTGGGAGTCCCCGCAGCTGGGAAGGGCACACTTACC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGGCGCAGTGTCTGGGAGTCCCCGCAGCTGGGAAGGGCACACTTACC  399

seq1  TCCTCTACCTCCAGGTCAATGCACCAGATAACCAGGTAGTTGGCCGTTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTACCTCCAGGTCAATGCACCAGATAACCAGGTAGTTGGCCGTTTC  449

seq1  CTCACACACCAGGTGGACGTTGTCCGACAGGTATTTCTGGCTGTCATCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACACACCAGGTGGACGTTGTCCGACAGGTATTTCTGGCTGTCATCCC  499

seq1  AGCGGTGGAGCATGCCTGCAGGAGAGGATGTTAGGAAGATGTCGCAGAGG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGGTGGAGCATGCCTGCAGGAGAGGATGTTAGGAAGATGTCGCAGAGG  549

seq1  CCATTGGAAGCCTTTTGCTGGCCTTGACTCCTAACCTAGCCTTTGTGCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGAAGCCTTTTGCTGGCCTTGACTCCTAACCTAGCCTTTGTGCAG  599

seq1  GAACTTACCGAAATGCTTGATCTGTTTCTCATATTTTTCAACGAAGGTCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTACCGAAATGCTTGATCTGTTTCTCATATTTTTCAACGAAGGTCT  649

seq1  TGTGTTTCTGCTCCCTTGCCTCCTCTGAGTCCTCCTCTGCCTTCTCAGGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTCTGCTCCCTTGCCTCCTCTGAGTCCTCCTCTGCCTTCTCAGGC  699

seq1  TTGGTATTGACCATGCTCTGTGACAGGGTGAGAGGGCAAGTGGGCTGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTATTGACCATGCTCTGTGACAGGGTGAGAGGGCAAGTGGGCTGGGG  749

seq1  CAAGGCAGGGGTGCGCCTGGGGTTTGGGGGCCGTGGCCGCCGCGCCCATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAGGGGTGCGCCTGGGGTTTGGGGGCCGTGGCCGCCGCGCCCATC  799

seq1  CTGTCCACATCGGAGGCGGTGGCGTCGCTAAGTGCATCAAGGTGGCGGAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCACATCGGAGGCGGTGGCGTCGCTAAGTGCATCAAGGTGGCGGAG  849

seq1  GCATGGCCGCGGGCCTTCGGGCAGATCAGAGGGTATGGATGGGCTTCGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCCGCGGGCCTTCGGGCAGATCAGAGGGTATGGATGGGCTTCGTT  899

seq1  GGCCTCCACTAGCCAATCCCAAGCTCAAACTGTCTGTCTGTCTGTCCCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCACTAGCCAATCCCAAGCTCAAACTGTCTGTCTGTCTGTCCCTC  949

seq1  CCCTGTCCTCGCACCCCACCCGGTGGCTTTGCCTGGCTCTCATTGTCAGA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCCTCGCACCCCACCCGGTGGCTTTGCCTGGCTCTCATTGTCAGA  999

seq1  ATTC  1003
      ||||
seq2  ATTC  1003

seq1: chr9_20786311_20786898
seq2: B6Ng01-109C16.g_295_882

seq1  TTTGAACTCAGAGAAGCATCTACCTTTACCGCCCAAGTGATTAAGATGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAACTCAGAGAAGCATCTACCTTTACCGCCCAAGTGATTAAGATGTG  50

seq1  AGCTACATCGCCCAGCTCTAACTGCTTTCTAAACATTTATCCTTCAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACATCGCCCAGCTCTAACTGCTTTCTAAACATTTATCCTTCAACCC  100

seq1  ATGGAGAAGCTCTTACCCCTCTTCAAAGCTTCTTTTTGTAGCAGGCAGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAGAAGCTCTTACCCCTCTTCAAAGCTTCTTTTTGTAGCAGGCAGAG  150

seq1  ACCATCACAGAAAACCACGATGTTTAAAAGGCAGAGAACAACTGACCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCACAGAAAACCACGATGTTTAAAAGGCAGAGAACAACTGACCTCA  200

seq1  GGATGCCCAGCTTCAATCCATGTGCTTACGGTATACAATCCCTACCTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGCCCAGCTTCAATCCATGTGCTTACGGTATACAATCCCTACCTTGA  250

seq1  AAGCTCTGGGAACATTTCAGAAGACAGGTGGAAAGACTGAGAGAGCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTCTGGGAACATTTCAGAAGACAGGTGGAAAGACTGAGAGAGCCAGA  300

seq1  GGACCAGGGCATCTACTGAGAGACAGTGTCAGCCACTTAGACAGGGAAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCAGGGCATCTACTGAGAGACAGTGTCAGCCACTTAGACAGGGAAGC  350

seq1  TGCACTCAGGAGACCTCAATGAAACTGTTACTTACCAGCACAAGGACAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTCAGGAGACCTCAATGAAACTGTTACTTACCAGCACAAGGACAAC  400

seq1  CCCAGCTGACAGTACGGATCTGGGTCTCCCAGTAAGGAGCTGGGGACATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGACAGTACGGATCTGGGTCTCCCAGTAAGGAGCTGGGGACATG  450

seq1  GCTCAGTGGGAGAACACATGCCTAGAACCCTTCAGTTGAAGTGGGGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGTGGGAGAACACATGCCTAGAACCCTTCAGTTGAAGTGGGGGTGG  500

seq1  GAAGGGAGAGTCTAGTGGCTCTAGACCCAGCATTCAGAGGCAGAGGCGGA  550
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GAAGGGAGAGTCTAGTGGCTCTAGA-CCAGCATTCAGAGGCAGAGGCGGA  549

seq1  AGGATGATGGATTTGAGGTCAG-CTTGTTATGCACAATA  588
      |||||||||||||||||||| | ||||||||||||||||
seq2  AGGATGATGGATTTGAGGTCTGCCTTGTTATGCACAATA  588