BAC Information

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BAC

Clone NameB6Ng01-109F04
Chromosome9 (Build37)16 (Build37)
Map Location 69,122,055 - 69,122,76130,855,769 - 30,856,488
singlet/doubletsingletsinglet
Overlap geneRora
Upstream gene9530091C08Rik
Downstream geneNarg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109F04.bB6Ng01-109F04.g
ACCDH916260DH916261
length707134
definitionDH916260|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F04, 5' end.DH916261|Mus musculus domesticus DNA, BAC clone: B6Ng01-109F04, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(69,122,055 - 69,122,761)(30,855,769 - 30,856,488)
sequence
gaattcaggccaaagtgagtatttccttagaatgtgtgtgatatgcatgt
gcatctctggtggggcccagagggtattaaataaatgtcgtctctgggaa
aggatgaatgatagtacatgtaataatgacccatggatttttgcatcagc
aaaagattcctataaaaaagttgaaatgcatttggaatttgtgtttgtga
ataattctgtgttcatctttttgccttaaaaaaaatcacttatactcagc
atgaactttcttgttttgtttggtttttgttttgtttttttgtttttttg
ttttttcttaaaccaaggtgtgaaaaacatagaagtgttttccagaacac
aaaaagacgattacagttcttagaaagctatgttggtatacggtgtgtgt
tgtgatgataattttaaattttcttcagagatatttcttagagcagccct
tgggtgagacgctgtaggaaggtttgaaagggaggttaaaggagcttggc
atgtctgcactaaacattgtcaccaagattcagagatggaatcccgttgt
cagtgtgtgcaccaggctaactgtggccagagaagtgtaattgtgagaaa
aaccttccacaattagagacatctcacttgaaagccttatgcatgcaatg
tagtagaaaacaaaaataaaatggccagaaggaagaggaggaggaggagg
aggagga
ctggccaaggagacgctgcttcaaaaggcaaggcggacagctccttagaa
aggacagcaaggttgagctctggcctccgtgtgtgtgtgtgtgtgtgtgt
ctgtgtgtgtgtatatgtgtgtgtgtgtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_69122055_69122761
seq2: B6Ng01-109F04.b_48_754 (reverse)

seq1  TCCTCCTCCTCCTCCTCCTCCTCTTCCTTCTGGCCATTTTATTTTTGTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTCCTCCTCCTCCTCTTCCTTCTGGCCATTTTATTTTTGTTT  50

seq1  TCTACTACATTGCATGCATAAGGCTTTCAAGTGAGATGTCTCTAATTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTACATTGCATGCATAAGGCTTTCAAGTGAGATGTCTCTAATTGTG  100

seq1  GAAGGTTTTTCTCACAATTACACTTCTCTGGCCACAGTTAGCCTGGTGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGTTTTTCTCACAATTACACTTCTCTGGCCACAGTTAGCCTGGTGCA  150

seq1  CACACTGACAACGGGATTCCATCTCTGAATCTTGGTGACAATGTTTAGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGACAACGGGATTCCATCTCTGAATCTTGGTGACAATGTTTAGTG  200

seq1  CAGACATGCCAAGCTCCTTTAACCTCCCTTTCAAACCTTCCTACAGCGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACATGCCAAGCTCCTTTAACCTCCCTTTCAAACCTTCCTACAGCGTC  250

seq1  TCACCCAAGGGCTGCTCTAAGAAATATCTCTGAAGAAAATTTAAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCAAGGGCTGCTCTAAGAAATATCTCTGAAGAAAATTTAAAATTAT  300

seq1  CATCACAACACACACCGTATACCAACATAGCTTTCTAAGAACTGTAATCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACAACACACACCGTATACCAACATAGCTTTCTAAGAACTGTAATCG  350

seq1  TCTTTTTGTGTTCTGGAAAACACTTCTATGTTTTTCACACCTTGGTTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTGTTCTGGAAAACACTTCTATGTTTTTCACACCTTGGTTTAA  400

seq1  GAAAAAACAAAAAAACAAAAAAACAAAACAAAAACCAAACAAAACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAAACAAAAAAACAAAAAAACAAAACAAAAACCAAACAAAACAAGAA  450

seq1  AGTTCATGCTGAGTATAAGTGATTTTTTTTAAGGCAAAAAGATGAACACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATGCTGAGTATAAGTGATTTTTTTTAAGGCAAAAAGATGAACACA  500

seq1  GAATTATTCACAAACACAAATTCCAAATGCATTTCAACTTTTTTATAGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTATTCACAAACACAAATTCCAAATGCATTTCAACTTTTTTATAGGA  550

seq1  ATCTTTTGCTGATGCAAAAATCCATGGGTCATTATTACATGTACTATCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTTTGCTGATGCAAAAATCCATGGGTCATTATTACATGTACTATCAT  600

seq1  TCATCCTTTCCCAGAGACGACATTTATTTAATACCCTCTGGGCCCCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCTTTCCCAGAGACGACATTTATTTAATACCCTCTGGGCCCCACCA  650

seq1  GAGATGCACATGCATATCACACACATTCTAAGGAAATACTCACTTTGGCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCACATGCATATCACACACATTCTAAGGAAATACTCACTTTGGCC  700

seq1  TGAATTC  707
      |||||||
seq2  TGAATTC  707

seq1: chr16_30855769_30856488
seq2: B6Ng01-109F04.g_140_207 (reverse)

seq1  ACACACACAGAGACACATACACATAGACACACACACAGACACACACACAT  50
      ||||||||    ||||| ||||||| ||||||||||||||||||||||| 
seq2  ACACACAC----ACACACACACATATACACACACACAGACACACACACAC  46

seq1  ACACACAGAAACACACACAGAGACATACACAGACACACACTCAGACACAC  100
      ||        |||||||| ||| |   || ||                  
seq2  AC--------ACACACACGGAGGC---CAGAGC-----------------  68

seq1  ACACACACACACAGACACTCACACAGATACAGTTACAGACAGAGACACAC  150
                                                        
seq2  --------------------------------------------------  68

seq1  ATATAGAGACACACATACATACAGAAACACACAGAGAGACATACACAGAG  200
                                                        
seq2  --------------------------------------------------  68

seq1  ACACACACACAGACACACACATACACACAGAAACACAGAGACATACACAG  250
                                                        
seq2  --------------------------------------------------  68

seq1  ACACACACTCAGACACACACAGACACACATAGATACAGTTACAGACAGAG  300
                                                        
seq2  --------------------------------------------------  68

seq1  ACACACATACAGAGACACACATATATACAGAAACACACAGAGAGACATAC  350
                                                        
seq2  --------------------------------------------------  68

seq1  ACAGAGAGATACACACACACACACACAGACACACATAGAGACACATAGAT  400
                                                        
seq2  --------------------------------------------------  68

seq1  AAAGACACAGACACACACACACACATCACACTAAGCAATAGCTTTCATGC  450
                                                        
seq2  --------------------------------------------------  68

seq1  AGACACGCCCTGTTAACAACTAGGAAATGCCGGGAGGGGTGTTTCCCTTC  500
                                                        
seq2  --------------------------------------------------  68

seq1  ATCTATGACAACAAAATTAAGGCTGTAAGAGAAATTATCTTGGAAATTAA  550
                                                        
seq2  --------------------------------------------------  68

seq1  TATGCCCTTGTCAGAACAGGAGTGTGCCTCCCAGCAGGGAGGGAACAGTC  600
                                                        
seq2  --------------------------------------------------  68

seq1  TTCACTATCTGACCCTGTTTCAGGATATTGCACAAAAATGCTTGTGGCTT  650
                                                        
seq2  --------------------------------------------------  68

seq1  GCAGACTGGAGGCATCATGTATAGGTGATCTGTCTCTGCCACTTCTGAAT  700
                                                        
seq2  --------------------------------------------------  68

seq1  GGGCCACCTGAGGCCAGAGC  720
                          
seq2  --------------------  68