BAC Information

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BAC

Clone NameB6Ng01-109I18
Chromosome9 (Build37)
Map Location 107,743,261 - 107,907,433
singlet/doubletdoublet
Overlap geneRbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1
Upstream geneVprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5
Downstream geneGmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1, Nicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-109I18.bB6Ng01-109I18.g
ACCDH916427DH916428
length283326
definitionDH916427|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I18, 5' end.DH916428|Mus musculus domesticus DNA, BAC clone: B6Ng01-109I18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,743,261 - 107,743,543)(107,907,108 - 107,907,433)
sequence
caggacaaccagggctacactgagaaactcacaggtaagggtggagtgga
ggtgggaggagaaagtgagaaaaaaagacaagagtgatagaaattgtaga
aaacttggttcaataggtcctacttacctatttttactaaattggaaata
caggattttaaaagagaagtaatagaactgattcaggtatctgcattcct
atcaatgggaatagtacaatgaaaggtatagaagttgttttattttatat
ttttttattttttgggtttttcgagacagggtt
aatttgtagactatggtggcctcaaactcagagatctgcttgtctctgca
gcctgtacctgtgtagacttctgatcagtgtagaataaccaccatctctg
atctctagctgttaatagtttaaaagtgctaaatcagcccgcgcctttaa
tcccagcacttgggaggcagaggcaggtagatctctgtgatttcaaggcc
agcctggtctacagagtgagttccaggtcagtcagagatatggaaagaca
ctgtctgaaaaacagagaaagaaggggccaggagtggggaggctgacaga
ggaaagggaaagggaggagggaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_107743261_107743543
seq2: B6Ng01-109I18.b_52_334

seq1  CAGGACAACCAGGGCTACACTGAGAAACTCACAGGTAAGGGTGGAGTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAACCAGGGCTACACTGAGAAACTCACAGGTAAGGGTGGAGTGGA  50

seq1  GGTGGGAGGAGAAAGTGAGAAAAAAAGACAAGAGTGATAGAAATTGTAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGAGGAGAAAGTGAGAAAAAAAGACAAGAGTGATAGAAATTGTAGA  100

seq1  AAACTTGGTTCAATAGGTCCTACTTACCTATTTTTACTAAATTGGAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTGGTTCAATAGGTCCTACTTACCTATTTTTACTAAATTGGAAATA  150

seq1  CAGGATTTTAAAAGAGAAGTAATAGAACTGATTCAGGTATCTGCATTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATTTTAAAAGAGAAGTAATAGAACTGATTCAGGTATCTGCATTCCT  200

seq1  ATCAATGGGAATAGTACAATGAAAGGTATAGAAGTTGTTTTATTTTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGGGAATAGTACAATGAAAGGTATAGAAGTTGTTTTATTTTATAT  250

seq1  TTTTTTATTTTTTGGGTTTTTCGAGACAGGGTT  283
      |||||||||||||||||||||||||||||||||
seq2  TTTTTTATTTTTTGGGTTTTTCGAGACAGGGTT  283

seq1: chr9_107907108_107907433
seq2: B6Ng01-109I18.g_77_402 (reverse)

seq1  TCCCTCCCTCCTCCCTTTCCCTTTCCTCTGTCAGCCTCCCCACTCCTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCCCTCCTCCCTTTCCCTTTCCTCTGTCAGCCTCCCCACTCCTGGC  50

seq1  CCCTTCTTTCTCTGTTTTTCAGACAGTGTCTTTCCATATCTCTGACTGAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCTTTCTCTGTTTTTCAGACAGTGTCTTTCCATATCTCTGACTGAC  100

seq1  CTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAAATCACAGAGATCTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCACTCTGTAGACCAGGCTGGCCTTGAAATCACAGAGATCTAC  150

seq1  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGCGGGCTGATTTAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTCTGCCTCCCAAGTGCTGGGATTAAAGGCGCGGGCTGATTTAGCA  200

seq1  CTTTTAAACTATTAACAGCTAGAGATCAGAGATGGTGGTTATTCTACACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAACTATTAACAGCTAGAGATCAGAGATGGTGGTTATTCTACACT  250

seq1  GATCAGAAGTCTACACAGGTACAGGCTGCAGAGACAAGCAGATCTCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAAGTCTACACAGGTACAGGCTGCAGAGACAAGCAGATCTCTGAG  300

seq1  TTTGAGGCCACCATAGTCTACAAATT  326
      ||||||||||||||||||||||||||
seq2  TTTGAGGCCACCATAGTCTACAAATT  326