BAC Information

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BAC

Clone NameB6Ng01-110A22
Chromosome9 (Build37)
Map Location 42,828,621 - 42,873,961
singlet/doubletdoublet
Overlap geneArhgef12
Upstream geneSorl1, Sc5d, Tecta, Tbcel, Grik4, LOC545339
Downstream geneTmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29, LOC384931, Pvrl1, LOC100042548, Thy1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110A22.bB6Ng01-110A22.g
ACCDH916790DH916791
length1,202844
definitionDH916790|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A22, 5' end.DH916791|Mus musculus domesticus DNA, BAC clone: B6Ng01-110A22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(42,872,728 - 42,873,961)(42,828,621 - 42,829,455)
sequence
gaattcaaatatattataagaacacgagtaaatagaatttggggatcaaa
gaagaggcaagggttttctgaggtagcagaggttgggaggcagaggcagg
tggatttctgagttccaggccagcctggtctacagagtgagttccaggac
agccagggctacacagagaaaccctgtctcgaaaaaccaaaaaaccaaaa
aaccaaaaaaaaaaccaaacaaaaacaaaaaacccaaaacaaacaagaaa
agatctcagtagttatgttggtgacgagagggcctcacatagagcagtgt
tagagataccactttctagggaaagtccctaggagtggtcctgaaggcca
ctaggacatactaacttaactgaggttagaggtaagaaatgcctgattta
ccctcttacgtcatgcttggtgtttggatgcctgtccccaccaccccatt
taatggaaaacgattgaaggaattttaatgagagggactgtttgtggttt
gcaagtctatagctgctctacaggaaaggatgctgtgtgtaagactggaa
aaccaatgtcattgcaagcaccaggcctagcagagtgggtcactctcagt
gagcaatggaggagaccaggagaagatgaattcgaagcattcattagtga
taaagcatttgaattcaaggagagatacaaacaccacagaaaccattgtg
ttaatagtgtgtacttctgactctgtaagtactgctatataggagatgct
cagaaatgactacttgataggggatagaattggggcagagggagaggtgg
atggcattaatggcttccaaatttctaattcaaaaacaaaattatgcatc
tgtgtttgcctacacatatgtgagcctatattgcctgtggaagccagaaa
atctactcaccccctggaattacagatattgtagctgtaatgtggatgct
ggggattaaatgtttttttttgaaaaaaaaaaaaacaaacagagcagcag
tgctctacactgactatctctcagccaattctagattctactaagacatc
tgtatgatgatgttcattgttaaagccagaaaagcagtttggggggtcaa
gtaattttcgaagtcaatggactgatgtcaatggtaattctaggtaccga
tggatgactgagagtagacaggtgaacggactgcggtctgttcttttagt
ac
gaattctttatacaactcaaagagatctttgtatgcctgagcatctacta
caacgctctgatcttacccccacgagcacaggactggtgattctctccat
attcccggctgctccaggggaatgaggggatgtcataatgggagacatat
gtccagtgactgatggctctacttcagaatcagcaagtgggatctggggc
gacccaggtgggcgtccctggacagtgagagctacataggaaccagctgg
aggtggggaggtggggagaaaagaagaaaagaaaaagtaacactgttgag
aaactttttaaaaaactcttttctctttatctgtggtagtgaggactgta
cccagggaatgcatacttgtccagtgacttattgaaccttttaagatatt
ttttatcttgagacaacctctctaagttgcccaagatgaccttgaactca
ttctgcagcaaggtaacgtttgaacttgtgatgctcctgcctgagcctcc
caagtgctggtatcacaactatgcaccacaatgcccagcaagtattcttt
gaaataaagctttcagtcttaatattctttgtgagaaagccatttactcc
atcttactagtcccaaatgctcacctcactctagctctttctattcttta
actggtttcaaaggaaaccaaaatgcaatcactctgatgatgtttgggag
tgggcattaaaaagtaggccataagtaaccaggattacatgagtcaatga
ggaggcaatgaaagaactaaggatacagcttttttaaaaaggtcatcact
gaggctgggggtatagtattgtccggtagagtgcatggtctatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_42872728_42873961
seq2: B6Ng01-110A22.b_50_1251 (reverse)

seq1  GTACTGAAAGAACAGACCGCAGTCACGGTCAACTTGTCTATCTTCAGTTC  50
      ||||| |||||||||||||||||| || || || ||||||   |||||  
seq2  GTACTAAAAGAACAGACCGCAGTC-CGTTC-ACCTGTCTACTCTCAGT--  46

seq1  CATACAATCGTGTTTACTTAGATTTACCATTGACATCAAGTTCAATAGAC  100
      ||| | ||||    ||| |||| |||||||||||||||   || || |||
seq2  CAT-CCATCG---GTACCTAGAATTACCATTGACATCA--GTCCATTGAC  90

seq1  CTAAAAATATTTACTTTGACCCCCACAAAACTGCTTTTCTGCCTTAACAA  150
       |  ||  | |||| ||||||||  | |||||||||||||| ||| |  |
seq2  TTCGAA--AATTAC-TTGACCCC--CCAAACTGCTTTTCTGGCTTTAACA  135

seq1  ATGGACATCATCCATACAGATGGTCTAGTAAGAATCTAGAATTTGGGCTG  200
      ||| ||||||| ||||||||||   |||| |||||||||||||  |||||
seq2  ATGAACATCAT-CATACAGATGTCTTAGT-AGAATCTAGAATT--GGCTG  181

seq1  AAGAGATAGTTCAGTGGTTAAGAGCACTGGCTGCTCTTGTTTTGTTTTTT  250
       |||||||| ||||||    |||||||| ||||||| |||||   |||||
seq2  -AGAGATAG-TCAGTG---TAGAGCACT-GCTGCTC-TGTTT--GTTTTT  222

seq1  TTTTTTTTAAAAAAAAAACATTTAATTCCCAGCATCCACATTACAGCTTA  300
      |||||||| ||||||||||||||||| |||||||||||||||||||| ||
seq2  TTTTTTTTCAAAAAAAAACATTTAATCCCCAGCATCCACATTACAGC-TA  271

seq1  CAATTATCTGTAATTCCAGGGGGTGAGTAGATTTTCTGGCTTCCACAGGC  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAA-TATCTGTAATTCCAGGGGGTGAGTAGATTTTCTGGCTTCCACAGGC  320

seq1  AATATAGGCTCACATATGTGTAGGCAAACACAGATGCATAATTTTTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AATATAGGCTCACATATGTGTAGGCAAACACAGATGCATAA-TTTTGTTT  369

seq1  TTGAATTAGAAATTTGGAAGCCATTAATGCCATCCACCTCTCCCTCTGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATTAGAAATTTGGAAGCCATTAATGCCATCCACCTCTCCCTCTGCC  419

seq1  CCAATTCTATCCCCCTATCAAGTAGTCATTTCTGAGCATCTCCTATATAG  500
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CCAATTCTAT-CCCCTATCAAGTAGTCATTTCTGAGCATCTCCTATATAG  468

seq1  CAGTACTTACAGAGTCAGAAGTACACACTATTAACACAATGGTTTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACTTACAGAGTCAGAAGTACACACTATTAACACAATGGTTTCTGTG  518

seq1  GTGTTTGTATCTCTCCTTGAATTCAAATGCTTTATCACTAATGAATGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTGTATCTCTCCTTGAATTCAAATGCTTTATCACTAATGAATGCTT  568

seq1  CGAATTCATCTTCTCCTGGTCTCCTCCATTGCTCACTGAGAGTGACCCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAATTCATCTTCTCCTGGTCTCCTCCATTGCTCACTGAGAGTGACCCAC  618

seq1  TCTGCTAGGCCTGGTGCTTGCAATGACATTGGTTTTCCAGTCTTACACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTAGGCCTGGTGCTTGCAATGACATTGGTTTTCCAGTCTTACACAC  668

seq1  AGCATCCTTTCCTGTAGAGCAGCTATAGACTTGCAAACCACAAACAGTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTTTCCTGTAGAGCAGCTATAGACTTGCAAACCACAAACAGTCC  718

seq1  CTCTCATTAAAATTCCTTCAATCGTTTTCCATTAAATGGGGTGGTGGGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTAAAATTCCTTCAATCGTTTTCCATTAAATGGGGTGGTGGGGA  768

seq1  CAGGCATCCAAACACCAAGCATGACGTAAGAGGGTAAATCAGGCATTTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATCCAAACACCAAGCATGACGTAAGAGGGTAAATCAGGCATTTCT  818

seq1  TACCTCTAACCTCAGTTAAGTTAGTATGTCCTAGTGGCCTTCAGGACCAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTAACCTCAGTTAAGTTAGTATGTCCTAGTGGCCTTCAGGACCAC  868

seq1  TCCTAGGGACTTTCCCTAGAAAGTGGTATCTCTAACACTGCTCTATGTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGGGACTTTCCCTAGAAAGTGGTATCTCTAACACTGCTCTATGTGA  918

seq1  GGCCCTCTCGTCACCAACATAACTACTGAGATCTTTTCTTGTTTGTTTTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCTCTCGTCACCAACATAACTACTGAGATCTTTTCTTGTTTGTTTTG  968

seq1  GGTTTTTTGTTTTTGTTTGGTTTTTTTTTTGGTTTTTTGGTTTTTTGGTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTTGTTTTTGTTTGGTTTTTTTTTTGGTTTTTTGGTTTTTTGGTT  1018

seq1  TTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCGAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTC  1068

seq1  TGTAGACCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCC  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTGGAACTCAGAAATCCACCTGCCTCTGCCTCCC  1118

seq1  AACCTCTGCTACCTCAGAAAACCCTTGCCTCTTCTTTGATCCCCAAATTC  1200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCTGCTACCTCAGAAAACCCTTGCCTCTTCTTTGATCCCCAAATTC  1168

seq1  TATTTACTCGTGTTCTTATAATATATTTGAATTC  1234
      ||||||||||||||||||||||||||||||||||
seq2  TATTTACTCGTGTTCTTATAATATATTTGAATTC  1202

seq1: chr9_42828621_42829455
seq2: B6Ng01-110A22.g_67_910

seq1  GAATTCTTTATACAACTCAAAGAGATCTTTGTATGCCTGAGCATCTACTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTATACAACTCAAAGAGATCTTTGTATGCCTGAGCATCTACTA  50

seq1  CAACGCTCTGATCTTACCCCCACGAGCACAGGACTGGTGATTCTCTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACGCTCTGATCTTACCCCCACGAGCACAGGACTGGTGATTCTCTCCAT  100

seq1  ATTCCCGGCTGCTCCAGGGGAATGAGGGGATGTCATAATGGGAGACATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCGGCTGCTCCAGGGGAATGAGGGGATGTCATAATGGGAGACATAT  150

seq1  GTCCAGTGACTGATGGCTCTACTTCAGAATCAGCAAGTGGGATCTGGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTGACTGATGGCTCTACTTCAGAATCAGCAAGTGGGATCTGGGGC  200

seq1  GACCCAGGTGGGCGTCCCTGGACAGTGAGAGCTACATAGGAACCAGCTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGTGGGCGTCCCTGGACAGTGAGAGCTACATAGGAACCAGCTGG  250

seq1  AGGTGGGGAGGTGGGGAGAAAAGAAGAAAAGAAAAAGTAACACTGTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGGGAGGTGGGGAGAAAAGAAGAAAAGAAAAAGTAACACTGTTGAG  300

seq1  AAACTTTTTAAAAAACTCTTTTCTCTTTATCTGTGGTAGTGAGGACTGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTTTTAAAAAACTCTTTTCTCTTTATCTGTGGTAGTGAGGACTGTA  350

seq1  CCCAGGGAATGCATACTTGTCCAGTGACTTATTGAACCTTTTAAGATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGAATGCATACTTGTCCAGTGACTTATTGAACCTTTTAAGATATT  400

seq1  TTTTATCTTGAGACAACCTCTCTAAGTTGCCCAAGATGACCTTGAACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCTTGAGACAACCTCTCTAAGTTGCCCAAGATGACCTTGAACTCA  450

seq1  TTCTGCAGCAAGGTAACGTTTGAACTTGTGATGCTCCTGCCTGAGCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGCAAGGTAACGTTTGAACTTGTGATGCTCCTGCCTGAGCCTCC  500

seq1  CAAGTGCTGGTATCACAACTATGCACCACAATGCCCAGCAAGTATTCTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGCTGGTATCACAACTATGCACCACAATGCCCAGCAAGTATTCTTT  550

seq1  GAAATAAAGCTTTCAGTCTTAATATTCTTTGTGAGAAAGCCATTTACTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAGCTTTCAGTCTTAATATTCTTTGTGAGAAAGCCATTTACTCC  600

seq1  ATCTTACTAGT-CCAAATGCTCACCTCACTCTAGCTCTTTCTATTCTTTA  649
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  ATCTTACTAGTCCCAAATGCTCACCTCACTCTAGCTCTTTCTATTCTTTA  650

seq1  ACTGG-TTCAAAGGAAACCAAAATGCAATCACTCTGATGATGTTT-GGAG  697
      ||||| ||||||||||||||||||||||||||||||||||||||| ||||
seq2  ACTGGTTTCAAAGGAAACCAAAATGCAATCACTCTGATGATGTTTGGGAG  700

seq1  TGGGCATTAAAAAGTAGGCCATAAGTAACCAGGATTACATGAG-CAATGA  746
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGGCATTAAAAAGTAGGCCATAAGTAACCAGGATTACATGAGTCAATGA  750

seq1  GGAGGCAATGAAAGAACT-AGGATACAGC-TTTTTAAAAAGGTCATCACT  794
      |||||||||||||||||| |||||||||| ||||||||||||||||||||
seq2  GGAGGCAATGAAAGAACTAAGGATACAGCTTTTTTAAAAAGGTCATCACT  800

seq1  GAGGCT-GGGGTATAGTTATGT-CGGTAGAGTGC-TTGTCTATC  835
      |||||| ||||||||||  ||| ||||||||||| | |||||||
seq2  GAGGCTGGGGGTATAGTATTGTCCGGTAGAGTGCATGGTCTATC  844