BAC Information

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BAC

Clone NameB6Ng01-110F16
Chromosome9 (Build37)
Map Location 108,018,315 - 108,167,742
singlet/doubletdoublet
Overlap geneBsn, LOC100042108, Dag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-110F16.bB6Ng01-110F16.g
ACCDH916997DH916998
length1,1001,110
definitionDH916997|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F16, 5' end.DH916998|Mus musculus domesticus DNA, BAC clone: B6Ng01-110F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,166,639 - 108,167,742)(108,018,315 - 108,019,437)
sequence
gaattcaggacctctggaagagcagtcagtgctcttaaccgctgagctat
ctctccagccctatatcttatgtttttattgtgcttggagttggttcttt
cttttcaccatgtgggttgtggggacccaacttaagtcatcagtaatgtc
tttactgtctaagtaatctctgaagcccttgattagtttttgagacaagg
tatcactctatagcccaaactggcctggagactcattatgcgaccttgac
tggccttcaatttacagcaatccttaagtcgcagctttatgagtgtaaag
attacagacggcagcaaccatggccagctcattctcagcctttctaaaat
ggtacagtcttaaagtcagaatctgagaagccattaactcttcagtttat
taacatccaagggatggcctgctcttgctctcctggattttagttcctct
tccttttctaggctctatgagttagtcacgtaagaattgagaaattgcaa
acaggtatttgaggtagggcatttcttcctgaaaattttttctcctagac
tcttctgaagagaactgcccgtcctttaggcaggaatcccaggctgagta
gccgccgggtctgtattcagaatgagtttactgataacagcttgtgtctg
aaactccagcctggccctaggccaaagaggaatggattccttctagcagt
gtggggtcagttaggaagggagcagagcctaccacagttctgatttccac
aggtattatgcactgtcaggtttagtaacttgttaaatctccagtctctg
gagtttggggccctctggtgagcccaggagagttaagaactactttagga
ccctccataaatggggaggccagattctagcagtaaccacccattcttaa
gaatgtggccaccgggggggtgagtgacctggtgctagcgggttcagggc
tttttttgagcttcagaggaggcattgattttagctttccaggaggggga
ggggaagcttgttgtatggcagcactaagaatgggtttacttcctgccca
cccaccggatctgggctttagttcttcatcatttaaggagaaggtaacaa

gaattcttcatcagtcatgtctgcccgggctgggggctgaggtgggaggg
gagacaagccgccttcgctgctgtcttccacgtagtcatgcctcagctgg
ctgccaaagtcatctgaagactcagctgtgtcctgctgttccctctgacg
tccccatgccaaggagtcgtcctcctctagaatgtcccccagttcctcat
ccgagtcgaaggcctcgggcgtgatggacagggagtgaggacgccgtttc
tggtcttcaaccgcactgctgctgctgcggggtggcttgctccattccgc
actgggagctacagcctgggcctccagtgaagggcgcaagctactaccca
ctttgtggagctccgaggggctgggtggacgtgggcctgtcacccctgca
ctgtcaagctgttccacttcttgctgtacaacacctgtgatctcgctctg
ggagctggagacaccgtcggaggagtagcctgtgtcactgaggctctgtg
ggcttcgagacaggtcctgagaataaggcttggggactggttcctgcata
gggtaaaaagcaggcatttactcctgatctcctgtcaatcccaaggacca
cgggaaggggccctccacaccctaggggctatctctctggccccacataa
cttacagacttcacagcaagagaaactttactagatgaatgtgtgggaga
cagcaaagtggcagacacaggacgtgtctccatcccacagactccagacc
agctgaactttcatttgttgtttgttgttgttgttttgtgacaggttctc
tctacagagccttggctgtcctagaactcaccaggtagactaggctagcc
ttgaactcactatgatctgactgcctctgcctccaagttgttgggactaa
aggagtggtgccatcatcccaggtgatctactgaaacttattctagaccc
tcttcactagggtgtcttttgaccccaatagatctgtcttaaggctacat
ggtaggcctcctcagactttctcactgaaagctaggaccctgtatgaatt
aacttgacctcagcctcccacccgtgggacctcctggaacgcctgacact
ggggtgcagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108166639_108167742
seq2: B6Ng01-110F16.b_45_1144 (reverse)

seq1  TTGTTACCCTCTCCTTAATATGGATGGAGAAACTAAGGCCAGATCCGGGT  50
      |||||||| ||||||||| || |||| ||||   ||| |||||||| |||
seq2  TTGTTACCTTCTCCTTAA-AT-GATGAAGAACTAAAGCCCAGATCC-GGT  47

seq1  GGGTGGGCAGGAAGGTAACCCATTTCTTTAGTGCTGGCCATACAACAGGC  100
      ||||||||||||||  ||||||||   |||||||| ||||||||||| ||
seq2  GGGTGGGCAGGAAGTAAACCCATT--CTTAGTGCT-GCCATACAACAAGC  94

seq1  TTCCCCTCCCCCTCCTTGGAAAGCTAAAATCCAATGCCTCCTCTGGAGCT  150
      ||||||||||||||| |||||||||||||| |||||||||||||| ||||
seq2  TTCCCCTCCCCCTCC-TGGAAAGCTAAAAT-CAATGCCTCCTCTGAAGCT  142

seq1  C-AAAATAGCTCTG-ACCCGCTAGCA-CAGGTCACTCA-CCCCCCGGTGG  196
      | |||| ||| ||| ||||||||||| ||||||||||| |||||||||||
seq2  CAAAAAAAGCCCTGAACCCGCTAGCACCAGGTCACTCACCCCCCCGGTGG  192

seq1  CCCACATTCTTTAG-ATGGGTGGTTACTGCTAGAATCTGGCCTCCCCCAT  245
       |||||||||| || |||||||||||||||||||||||||||| ||||||
seq2  -CCACATTCTTAAGAATGGGTGGTTACTGCTAGAATCTGGCCT-CCCCAT  240

seq1  TTATGGAGGGTCCTAAAGTAGTTCTTAACTCTCCTGGGCTCACCAGAGGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGGAGGGTCCTAAAGTAGTTCTTAACTCTCCTGGGCTCACCAGAGGG  290

seq1  -CCCAAACTCCAGAGACTGGAGATTTAACAAGTTACTAAACCTGACAGTG  344
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACTCCAGAGACTGGAGATTTAACAAGTTACTAAACCTGACAGTG  340

seq1  CATAATACCTGTGGAAATCAGAACTGTGGTAGGCTCTGCTCCCTTCCTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATACCTGTGGAAATCAGAACTGTGGTAGGCTCTGCTCCCTTCCTAA  390

seq1  CTGACCCCACACTGCTAGAAGGAATCCATTCCTCTTTGGCCTAGGGCCAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCCCACACTGCTAGAAGGAATCCATTCCTCTTTGGCCTAGGGCCAG  440

seq1  GCTGGAGTTTCAGACACAAGCTGTTATCAGTAAACTCATTCTGAATACAG  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGTTTCAGACACAAGCTGTTATCAGTAAACTCATTCTGAATACAG  490

seq1  ACCCGGCGGCTACTCAGCCTGGGATTCCTGCCTAAAGGACGGGCAGTTCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCGGCGGCTACTCAGCCTGGGATTCCTGCCTAAAGGACGGGCAGTTCT  540

seq1  CTTCAGAAGAGTCTAGGAGAAAAAATTTTCAGGAAGAAATGCCCTACCTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGAAGAGTCTAGGAGAAAAAATTTTCAGGAAGAAATGCCCTACCTC  590

seq1  AAATACCTGTTTGCAATTTCTCAATTCTTACGTGACTAACTCATAGAGCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACCTGTTTGCAATTTCTCAATTCTTACGTGACTAACTCATAGAGCC  640

seq1  TAGAAAAGGAAGAGGAACTAAAATCCAGGAGAGCAAGAGCAGGCCATCCC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGGAAGAGGAACTAAAATCCAGGAGAGCAAGAGCAGGCCATCCC  690

seq1  TTGGATGTTAATAAACTGAAGAGTTAATGGCTTCTCAGATTCTGACTTTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATGTTAATAAACTGAAGAGTTAATGGCTTCTCAGATTCTGACTTTA  740

seq1  AGACTGTACCATTTTAGAAAGGCTGAGAATGAGCTGGCCATGGTTGCTGC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGTACCATTTTAGAAAGGCTGAGAATGAGCTGGCCATGGTTGCTGC  790

seq1  CGTCTGTAATCTTTACACTCATAAAGCTGCGACTTAAGGATTGCTGTAAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCTGTAATCTTTACACTCATAAAGCTGCGACTTAAGGATTGCTGTAAA  840

seq1  TTGAAGGCCAGTCAAGGTCGCATAATGAGTCTCCAGGCCAGTTTGGGCTA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGGCCAGTCAAGGTCGCATAATGAGTCTCCAGGCCAGTTTGGGCTA  890

seq1  TAGAGTGATACCTTGTCTCAAAAACTAATCAAGGGCTTCAGAGATTACTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGATACCTTGTCTCAAAAACTAATCAAGGGCTTCAGAGATTACTT  940

seq1  AGACAGTAAAGACATTACTGATGACTTAAGTTGGGTCCCCACAACCCACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAGTAAAGACATTACTGATGACTTAAGTTGGGTCCCCACAACCCACA  990

seq1  TGGTGAAAAGAAAGAACCAACTCCAAGCACAATAAAAACATAAGATATAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGAAAAGAAAGAACCAACTCCAAGCACAATAAAAACATAAGATATAG  1040

seq1  GGCTGGAGAGATAGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGAGATAGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGG  1090

seq1  TCCTGAATTC  1104
      ||||||||||
seq2  TCCTGAATTC  1100

seq1: chr9_108018315_108019437
seq2: B6Ng01-110F16.g_68_1177

seq1  GAATTCTTCATCAGTCATGTCTGCCCGGGCTGGGGGCTGAGGTGGGAGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCATCAGTCATGTCTGCCCGGGCTGGGGGCTGAGGTGGGAGGG  50

seq1  GAGACAAGCCGCCTTCGCTGCTGTCTTCCACGTAGTCATGCCTCAGCTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAAGCCGCCTTCGCTGCTGTCTTCCACGTAGTCATGCCTCAGCTGG  100

seq1  CTGCCAAAGTCATCTGAAGACTCAGCTGTGTCCTGCTGTTCCCTCTGACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCAAAGTCATCTGAAGACTCAGCTGTGTCCTGCTGTTCCCTCTGACG  150

seq1  TCCCCATGCCAAGGAGTCGTCCTCCTCTAGAATGTCCCCCAGTTCCTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCATGCCAAGGAGTCGTCCTCCTCTAGAATGTCCCCCAGTTCCTCAT  200

seq1  CCGAGTCGAAGGCCTCGGGCGTGATGGACAGGGAGTGAGGACGCCGTTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGTCGAAGGCCTCGGGCGTGATGGACAGGGAGTGAGGACGCCGTTTC  250

seq1  TGGTCTTCAACCGCACTGCTGCTGCTGCGGGGTGGCTTGCTCCATTCCGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTCAACCGCACTGCTGCTGCTGCGGGGTGGCTTGCTCCATTCCGC  300

seq1  ACTGGGAGCTACAGCCTGGGCCTCCAGTGAAGGGCGCAAGCTACTACCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGGAGCTACAGCCTGGGCCTCCAGTGAAGGGCGCAAGCTACTACCCA  350

seq1  CTTTGTGGAGCTCCGAGGGGCTGGGTGGACGTGGGCCTGTCACCCCTGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGGAGCTCCGAGGGGCTGGGTGGACGTGGGCCTGTCACCCCTGCA  400

seq1  CTGTCAAGCTGTTCCACTTCTTGCTGTACAACACCTGTGATCTCGCTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAAGCTGTTCCACTTCTTGCTGTACAACACCTGTGATCTCGCTCTG  450

seq1  GGAGCTGGAGACACCGTCGGAGGAGTAGCCTGTGTCACTGAGGCTCTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGAGACACCGTCGGAGGAGTAGCCTGTGTCACTGAGGCTCTGTG  500

seq1  GGCTTCGAGACAGGTCCTGAGAATAAGGCTTGGGGACTGGTTCCTGCATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCGAGACAGGTCCTGAGAATAAGGCTTGGGGACTGGTTCCTGCATA  550

seq1  GGGTAAAAAGCAGGCATTTACTCCTGATCTCCTGTCAATCCCAAGGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAAAAGCAGGCATTTACTCCTGATCTCCTGTCAATCCCAAGGACCA  600

seq1  CGGGAAGGGGCCCTCCACACCCTAGGGGCTATCTCTCTGGCCCCACATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGAAGGGGCCCTCCACACCCTAGGGGCTATCTCTCTGGCCCCACATAA  650

seq1  CTTACAGACTTCACAGCAAGAGAAACTTTACTAGATGAATGTGTGGGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAGACTTCACAGCAAGAGAAACTTTACTAGATGAATGTGTGGGAGA  700

seq1  CCAGCAAAGTGGCAGACACAGGACGTGTCTCCATCCCACAGACTCCAGAC  750
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -CAGCAAAGTGGCAGACACAGGACGTGTCTCCATCCCACAGACTCCAGAC  749

seq1  CAGCTGAAC-TTCATTTGTTGTTTGTTGTTGTTGTTTTGTGACAGGGTCT  799
      ||||||||| |||||||||||||||||||||||||||||||||||| |||
seq2  CAGCTGAACTTTCATTTGTTGTTTGTTGTTGTTGTTTTGTGACAGGTTCT  799

seq1  CTCTACAGAGCCTTGGCTGTCCTAGAACTCACCAGGTAGACTAGGCTAGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTACAGAGCCTTGGCTGTCCTAGAACTCACCAGGTAGACTAGGCTAGC  849

seq1  CTTGAACTCACAAAGATCTGACTGCCTCTGCCTCCAAAGTGTTGGGACTA  899
      ||||||||||| | |||||||||||||||||||||||  |||||||||||
seq2  CTTGAACTCACTATGATCTGACTGCCTCTGCCTCCAAGTTGTTGGGACTA  899

seq1  AAGGAGT-GTGCCATCATCCCA-GTGATCTACTGAAACTTAATCTAGACC  947
      ||||||| |||||||||||||| |||||||||||||||||| ||||||||
seq2  AAGGAGTGGTGCCATCATCCCAGGTGATCTACTGAAACTTATTCTAGACC  949

seq1  CTCTTTCAACTAGGGTGTCTCTGTGACCCCAATAGATCTGTCTTAGGCCT  997
      |||||   |||||||||||| | |||||||||||||||||||||| | ||
seq2  CTCTT--CACTAGGGTGTCT-TTTGACCCCAATAGATCTGTCTTAAGGCT  996

seq1  ACATTGTTAGCCCTTCCTCAGACTATCTCACCTGAAAGCTAGGACCCTTG  1047
      |||| ||  |||  |||||||||| ||||| |||||||||||||||||  
seq2  ACATGGTAGGCC--TCCTCAGACTTTCTCA-CTGAAAGCTAGGACCCT--  1041

seq1  GTAATGAAATAGAACTGACCTCAGCCTCCCCACCCTTGGGAGCTTCTGGA  1097
      || ||||| || |  |||||||||||| ||||||| ||||| || |||||
seq2  GT-ATGAATTA-ACTTGACCTCAGCCT-CCCACCCGTGGGACCTCCTGGA  1088

seq1  ACAGGCTTGACAACTGGGGTGGCAGG  1123
      ||  || |||| |||||||| |||||
seq2  AC--GCCTGAC-ACTGGGGT-GCAGG  1110