BAC Information

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BAC

Clone NameB6Ng01-111H16
Chromosome9 (Build37)
Map Location 55,813,074 - 55,975,222
singlet/doubletdoublet
Overlap gene4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1
Upstream geneChrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980
Downstream geneTspan3, C230081A13Rik, Hmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111H16.bB6Ng01-111H16.g
ACCDH917814DH917815
length1,1021,053
definitionDH917814|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H16, 5' end.DH917815|Mus musculus domesticus DNA, BAC clone: B6Ng01-111H16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,813,074 - 55,814,192)(55,974,158 - 55,975,222)
sequence
gaattctatgtgcttcagagatccgcaagcatacatataatacacaacct
cataaacggtggttaatgagctcacaggctaatgctaaacacagaatctg
gaactatacctgggacttccaccttggccttttcacctaagacaatcaca
agcctgagtccattcatcactgtgtctccttgactccacccaggggatat
gcctaactgaagaagacatgctagagtgctgttccttggtgaacacgagg
catgtggggtaaatgctgaggaaggtcagttattcacaaattgtgttgtc
acagaccaaataacttgggtacgtagacaggtaagcccaccagataatac
tctctcaaattgttgttcttctagaacataaccttgcaggtttggaaggg
tctcattttaatttcagatatacttgtgttcgatagttataaacaaaagc
ttaaaaatcgttcctaacttgtcctgagtggttactttgtgtctattcct
aacataagtcaccactatgctatatgttacagatctctttgttcagtgag
aactcaggaagactgggtccattgaaattatacattaaaatgcctacttt
ggttacacgtggaaactctaccatcatccattattattgtctcataaata
tgggcttctgtttaggcatcagtcaactctgaggaaagtgtctgttcttc
gaggaaagctctgtatctcctgagctacccacacggacacacaggggcat
aaagaaagatagaaacaattgctttctgtgtaaatgtctaatagttttac
ataacatttttccccttcattggctatgatattacatataaagaccaaat
ccccacagtgttttgtaatgtagattccttccctcagaatctctatactt
atggtttcagcaaacgtgacccacagaaatgacttaaccatagaatacta
aaaacgtcagcccaaggacatggggagaaatgagcttcatttatgactta
aattacaacaacgaaaacgagactcgagcccgggctaccttgcagcttat
cttgcccaacaccgcagggccacacggaactcccacggattctaagactc
tg
gaattctcagcgcttcaggacctctgccaacctgctaccaccacaggcct
ccatggcagcaggcctccccacagccattcctgatagtcccttcgttctc
agcatcctctcctcccatggtcactctcctggtcatctccgcacctgcag
ccagcagggccccatccccaccagatccccagccccaggctctgtgggga
ggaggaagctacctttaaagttcagctcccacatatcttgccaggcccag
ccagtgtgggccaagcaagtcgtcttttccttggctgcgcaatgactagg
ccaggtcacccacaggacacagaactagggccttggcacctgactacagc
caggccagggagatggccctctaaaagcctggtgaatccaaatgtctggg
ctttgggccattcataagccacctggaagtcacccgtgctacctctcagt
taagacactaccctgcctctcagtagggccagacagacaaggaagccaga
gtgggcacttgcccgggactctccgcatagccgttggtgaataactggag
tgtgagtaattagtacttggatgctcttggacccggggcgctctgacggt
agtttgatcctggactatctcaatgggatggccagcttctgaacagggta
ccagacccacaggagctgttcagccatgagatgtggaagtcaggctgacc
ccgcggctgtgtcctgatcatatgcagttcatcgggtgctcacctcttta
tcacaccacaggagggctggacgctagggctgccaatcagtggggtcacc
tccctgtcatagtagtctgataaggcaccggagctgcagagagcaaatgc
atgaggccagagcagcgaggacctcgttagaggaccacttgccttctgca
ccatgcaaggattaaagcatggacctggtgccctggctttttttttttta
aagatttgttttagccgggcgtggtggcgcacgcttattccagcactcgg
gaggcagaggcaggctgtatttcttgagtcgaggcagcttggtctccaag
tga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_55813074_55814192
seq2: B6Ng01-111H16.b_42_1143

seq1  GAATTCTATGTGCTTCAGAGATCCGCAAGCATACATATAATACACAACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATGTGCTTCAGAGATCCGCAAGCATACATATAATACACAACCT  50

seq1  CATAAACGGTGGTTAATGAGCTCACAGGCTAATGCTAAACACAGAATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACGGTGGTTAATGAGCTCACAGGCTAATGCTAAACACAGAATCTG  100

seq1  GAACTATACCTGGGACTTCCACCTTGGCCTTTTCACCTAAGACAATCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATACCTGGGACTTCCACCTTGGCCTTTTCACCTAAGACAATCACA  150

seq1  AGCCTGAGTCCATTCATCACTGTGTCTCCTTGACTCCACCCAGGGGATAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGAGTCCATTCATCACTGTGTCTCCTTGACTCCACCCAGGGGATAT  200

seq1  GCCTAACTGAAGAAGACATGCTAGAGTGCTGTTCCTTGGTGAACACGAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAACTGAAGAAGACATGCTAGAGTGCTGTTCCTTGGTGAACACGAGG  250

seq1  CATGTGGGGTAAATGCTGAGGAAGGTCAGTTATTCACAAATTGTGTTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGGGGTAAATGCTGAGGAAGGTCAGTTATTCACAAATTGTGTTGTC  300

seq1  ACAGACCAAATAACTTGGGTACGTAGACAGGTAAGCCCACCAGATAATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACCAAATAACTTGGGTACGTAGACAGGTAAGCCCACCAGATAATAC  350

seq1  TCTCTCAAATTGTTGTTCTTCTAGAACATAACCTTGCAGGTTTGGAAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCAAATTGTTGTTCTTCTAGAACATAACCTTGCAGGTTTGGAAGGG  400

seq1  TCTCATTTTAATTTCAGATATACTTGTGTTCGATAGTTATAAACAAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATTTTAATTTCAGATATACTTGTGTTCGATAGTTATAAACAAAAGC  450

seq1  TTAAAAATCGTTCCTAACTTGTCCTGAGTGGTTACTTTGTGTCTATTCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATCGTTCCTAACTTGTCCTGAGTGGTTACTTTGTGTCTATTCCT  500

seq1  AACATAAGTCACCACTATGCTATATGTTACAGATCTCTTTGTTCAGTGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAAGTCACCACTATGCTATATGTTACAGATCTCTTTGTTCAGTGAG  550

seq1  AACTCAGGAAGACTGGGTCCATTGAAATTATACATTAAAATGCCTACTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGGAAGACTGGGTCCATTGAAATTATACATTAAAATGCCTACTTT  600

seq1  GGTTACACGTGGAAACTCTACCATCATCCATTATTATTGTCTCATAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACACGTGGAAACTCTACCATCATCCATTATTATTGTCTCATAAATA  650

seq1  TGGGCTTCTGTTTAGGCATCAGTCAACTCTGAGGAAAGTGTCTGTTCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTTCTGTTTAGGCATCAGTCAACTCTGAGGAAAGTGTCTGTTCTTC  700

seq1  GAGGAAAGCTCTGTATCTCCTGAGCTACCCACACGGACACACAGGGGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGCTCTGTATCTCCTGAGCTACCCACACGGACACACAGGGGCAT  750

seq1  AAAGAAAGATAGAAACAATTGCTTTCTGTGTAAATGTCTAATAGTTTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAAAGATAGAAACAATTGCTTTCTGTGTAAATGTCTAATAGTTTTAC  800

seq1  ATAACATTTTTCCCCTTCATTGGCTATGAAATTACATATAAAGACCAAAT  850
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATAACATTTTTCCCCTTCATTGGCTATGATATTACATATAAAGACCAAAT  850

seq1  CCCCACAGTG-TTTGTAATGTAGATTCCTTCCCTCCAGAATCTCTATACC  899
      |||||||||| ||||||||||||||||||||||| ||||||||||||| |
seq2  CCCCACAGTGTTTTGTAATGTAGATTCCTTCCCT-CAGAATCTCTATA-C  898

seq1  TTATGGTTTCAGCAAAACGTGACCCACAGAAATGACTAAACCATAGAATA  949
      ||||||||||||| ||||||||||||||||||||||| ||||||||||||
seq2  TTATGGTTTCAGC-AAACGTGACCCACAGAAATGACTTAACCATAGAATA  947

seq1  CTAAAAACCGTCAGCACAAGGACATGGGAGAAAATGAGCTTTCATTTAAG  999
      ||||||| ||||||| ||||||||||||   |||||||| ||||||| | 
seq2  CTAAAAA-CGTCAGCCCAAGGACATGGGGAGAAATGAGC-TTCATTT-AT  994

seq1  GAACTAAATTACAACAAACCGAAAAACGAGACTCGAGCCCCGGGCTACCT  1049
      ||  |||||||||||||  || ||||||||||||||| ||||||||||||
seq2  GACTTAAATTACAACAA--CG-AAAACGAGACTCGAG-CCCGGGCTACCT  1040

seq1  TGCCAGCAGAGTCTTGCCCAACACCCGCAAGGGCCCACACGGGACTCCCC  1099
      || ||||  | |||||||||||| |||||  || |||||||| ||| |||
seq2  TG-CAGCTTA-TCTTGCCCAACA-CCGCA--GGGCCACACGGAACT-CCC  1084

seq1  ACGGGATCCTAAGACCTCTG  1119
      || |||| |||||| |||||
seq2  AC-GGATTCTAAGA-CTCTG  1102

seq1: chr9_55974158_55975222
seq2: B6Ng01-111H16.g_71_1123 (reverse)

seq1  TCACTTTGTAGACCAAGCTGGCCTCGAACTC-AGAAAT-CCGCCTGCCTC  48
      |||| ||| |||||||||| |||||| |||| |||||| | |||||||||
seq2  TCAC-TTGGAGACCAAGCT-GCCTCG-ACTCAAGAAATACAGCCTGCCTC  47

seq1  TGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCGGCTAAA  98
      ||||||||||||||||| ||   | |||||||||||||||||||||||||
seq2  TGCCTCCCGAGTGCTGGAAT---AAGCGTGCGCCACCACGCCCGGCTAAA  94

seq1  ACAAAATCTTTAAAAAAAAAAAAAGCCA-GGCACAGTGTTCCATGCCTTT  147
      || |||||||| |||||||||||||||| |||||   | |||||| ||||
seq2  AC-AAATCTTT-AAAAAAAAAAAAGCCAGGGCAC-CAGGTCCATG-CTTT  140

seq1  AATCCCTGCATGGGGTGGCAG-AGGCAGGTGGTCCTCTGAACGAGGTCCT  196
      ||||| |||||||    |||| ||||| |||||||||| |||||||||||
seq2  AATCCTTGCATGG---TGCAGAAGGCAAGTGGTCCTCT-AACGAGGTCCT  186

seq1  CGCTGCTCTTGGCCTCATGCATTTGCTCTCTGCAGCTCCGGTGCCTTATC  246
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CGCTGCTC-TGGCCTCATGCATTTGCTCTCTGCAGCTCCGGTGCCTTATC  235

seq1  AGAACTACTATGACAGGGAGGTGACCCCACTGATTGGCAGCCCTAGCGTC  296
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AG-ACTACTATGACAGGGAGGTGACCCCACTGATTGGCAGCCCTAGCGTC  284

seq1  CAGCCCTCCTGTGGTGTGATAAAGAGGTGAGCACCCGATGAACTGCATAT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTCCTGTGGTGTGATAAAGAGGTGAGCACCCGATGAACTGCATAT  334

seq1  GATCAGGACACAGCCGCGGGGTCAGCCTGACTTCCACATCTCATGGCTGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGACACAGCCGCGGGGTCAGCCTGACTTCCACATCTCATGGCTGA  384

seq1  ACAGCTCCTGTGGGTCTGGTACCCTGTTCAGAAGCTGGCCATCCCATTGA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCTCCTGTGGGTCTGGTACCCTGTTCAGAAGCTGGCCATCCCATTGA  434

seq1  GATAGTCCAGGATCAAACTACCGTCAGAGCGCCCCGGGTCCAAGAGCATC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTCCAGGATCAAACTACCGTCAGAGCGCCCCGGGTCCAAGAGCATC  484

seq1  CAAGTACTAATTACTCACACTCCAGTTATTCACCAACGGCTATGCGGAGA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTACTAATTACTCACACTCCAGTTATTCACCAACGGCTATGCGGAGA  534

seq1  GTCCCGGGCAAGTGCCCACTCTGGCTTCCTTGTCTGTCTGGCCCTACTGA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCGGGCAAGTGCCCACTCTGGCTTCCTTGTCTGTCTGGCCCTACTGA  584

seq1  GAGGCAGGGTAGTGTCTTAACTGAGAGGTAGCACGGGTGACTTCCAGGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGTAGTGTCTTAACTGAGAGGTAGCACGGGTGACTTCCAGGTG  634

seq1  GCTTATGAATGGCCCAAAGCCCAGACATTTGGATTCACCAGGCTTTTAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATGAATGGCCCAAAGCCCAGACATTTGGATTCACCAGGCTTTTAGA  684

seq1  GGGCCATCTCCCTGGCCTGGCTGTAGTCAGGTGCCAAGGCCCTAGTTCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCATCTCCCTGGCCTGGCTGTAGTCAGGTGCCAAGGCCCTAGTTCTG  734

seq1  TGTCCTGTGGGTGACCTGGCCTAGTCATTGCGCAGCCAAGGAAAAGACGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCTGTGGGTGACCTGGCCTAGTCATTGCGCAGCCAAGGAAAAGACGA  784

seq1  CTTGCTTGGCCCACACTGGCTGGGCCTGGCAAGATATGTGGGAGCTGAAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTGGCCCACACTGGCTGGGCCTGGCAAGATATGTGGGAGCTGAAC  834

seq1  TTTAAAGGTAGCTTCCTCCTCCCCACAGAGCCTGGGGCTGGGGATCTGGT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGTAGCTTCCTCCTCCCCACAGAGCCTGGGGCTGGGGATCTGGT  884

seq1  GGGGATGGGGCCCTGCTGGCTGCAGGTGCGGAGATGACCAGGAGAGTGAC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATGGGGCCCTGCTGGCTGCAGGTGCGGAGATGACCAGGAGAGTGAC  934

seq1  CATGGGAGGAGAGGATGCTGAGAACGAAGGGACTATCAGGAATGGCTGTG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAGGAGAGGATGCTGAGAACGAAGGGACTATCAGGAATGGCTGTG  984

seq1  GGGAGGCCTGCTGCCATGGAGGCCTGTGGTGGTAGCAGGTTGGCAGAGGT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGCCTGCTGCCATGGAGGCCTGTGGTGGTAGCAGGTTGGCAGAGGT  1034

seq1  CCTGAAGCGCTGAGAATTC  1065
      |||||||||||||||||||
seq2  CCTGAAGCGCTGAGAATTC  1053