BAC Information

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BAC

Clone NameB6Ng01-111J19
Chromosome9 (Build37)
Map Location 45,950,337 - 46,094,117
singlet/doubletdoublet
Overlap geneBC033915, Apoa1, Apoc3, Apoa4, Apoa5, Zfp259, Bud13
Upstream geneScn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214, Pcsk7, Tagln, Sidt2, Pafah1b2, 2610005M20Rik
Downstream gene4931429L15Rik, LOC100042722, EG667890, 2900052N01Rik, D930036J05
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111J19.bB6Ng01-111J19.g
ACCDH917910DH917911
length1,155600
definitionDH917910|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J19, 5' end.DH917911|Mus musculus domesticus DNA, BAC clone: B6Ng01-111J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,092,949 - 46,094,117)(45,950,337 - 45,950,935)
sequence
gaattcaggttgtcaggcttgtcaagtgcattagccatgtcactgccccc
tactggcttttaaacttaaaggtatggctcaatgtttgtgtgctgtcaat
tcactccatcactgtccacctttggtaatatcagtttttacaaaggcacc
cccttccttctgccagacctactcttctcactgttaatcacgaatcttat
tttctttgggccctgtgtattagtcagggttctctagagtcacagaactt
atggatagtctctagatagtaaaggaatttattgatgatttacagtcggc
agcccaattcccaacaatggttcagtcgcagctatgaatggaagtccaag
gatctagcagctactcagtctcacgcagcaagcaggcgaaggagcaagag
ctagagctagactcccttcttccaatgtccttatattgtctccagcagaa
ggtgtagcccagattaaaggtgtgttccaccacacctttaatcccagatg
aaaggtgtagcccagattaaaggtgttttccttaaactgggagattcaat
cttctggaatccatagccactatggctcaagatctccaaaccaagatcca
gataaggatctccaagcctcaagataagggtcactggtgagccttccaat
tccggattgtagttcattccaaatattgtcaagttgacaaccaggaatag
ccactacaccctggtttttaataacttccctgggacctatctttcttgct
cactgtctcctactcccagagtagaaatacctctacacactcttagaatg
ctttcatttgtattttatcagcccatattctcattaaattctaagttccc
accagccaaagggctaaggcattctcttatttattcccttcttcttggtg
tgttccctataagctagcttccagctctctatcctccagcccagcctccc
ctgtgctgggattatagacttttacaccatatcctgctgactatacattt
ttgttcatcaaggcttctcaccacctgtcacaggaggtatcagccttcca
accatggactttcacactgcaacctcaacaggggtaaggaatggccaagt
attaacgattgaccttctttagttcatggccctttacggaactactgcat
actac
gaattcccacaaaccaatttatttatgccatggagcattcaaggactgcc
agtagggcaggcagtggtgagggcaaaattgtgtaaccattgaatgctac
accgtgaggtccatgttccattgagaacttttatcttgttaaattctaga
tcttcagggacattaacatagcacatactgtgtgccagcttgctgtcacc
tttaaaacatatgttattttaaccacatacattctttgtatccttctaaa
caaaactagtattctcccatcaaactggttcattattattattattatta
ttattattattattaattattgttattattagactatgaagactagtact
ctgctcagactttacattggaggcagataaccacaccactgtgcttatct
gatcactgatcaaacaaataggagccatttcctccccagttaattcctca
tttgttagtctgtagttttgctttcttaatatcatacatagctagtttat
gtttgtaatctgtacaggatgcctgcagaagccactgtgcatttccctca
gagcgccattggctctcttctcttctcttctcttctcttctcttatctta

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_46092949_46094117
seq2: B6Ng01-111J19.b_46_1200 (reverse)

seq1  GTAGTATGCCAGTAGTTACGTTATATAGGCCATTGTAACTAAAGAAAGTC  50
      |||||||| |||||||| |||   |  ||||||   |||||||||| |||
seq2  GTAGTATG-CAGTAGTTCCGT--AAAGGGCCAT--GAACTAAAGAAGGTC  45

seq1  TATCTGTTTAATACATTGGCCATTCCTTTTCCCCTGGTTGAGTTTGCAGT  100
       |||   ||||||| ||||||||||| || ||||| |||||| |||||| 
seq2  AATC--GTTAATAC-TTGGCCATTCC-TTACCCCT-GTTGAGGTTGCAG-  89

seq1  TGTG-AAGTCCATGGGTGTGGAGGGCTGAATACCTCCTGTGACAGTTGTG  149
      |||| ||||||||||   |||| ||||| ||||||||||||||||  |||
seq2  TGTGAAAGTCCATGG--TTGGAAGGCTG-ATACCTCCTGTGACAG--GTG  134

seq1  TTGAAGAAGCCTTGATGAACAAAAAATGTATTAGTCAGCAGGATATGGTG  199
       || |||||||||||||||| ||||||||| |||||||||||||||||| 
seq2  GTG-AGAAGCCTTGATGAAC-AAAAATGTA-TAGTCAGCAGGATATGGT-  180

seq1  GTAAAAGTCTATAATCCCAGCACAGGGGAGGCTGGGCTGGAGGATAGAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAAGTCTATAATCCCAGCACAGGGGAGGCTGGGCTGGAGGATAGAGA  230

seq1  GCTGGAAGCTAGC-TATAGGGAACAACAACAAGAAGAAGGGAATAAATAA  298
      ||||||||||||| |||||||||| ||| |||||||||||||||||||||
seq2  GCTGGAAGCTAGCTTATAGGGAAC-ACACCAAGAAGAAGGGAATAAATAA  279

seq1  GAGAATGCCTTAGCCC-TTGGCT-GTTGGAACTTAGAATTTAATGAGAAT  346
      |||||||||||||||| |||||| || |||||||||||||||||||||||
seq2  GAGAATGCCTTAGCCCTTTGGCTGGTGGGAACTTAGAATTTAATGAGAAT  329

seq1  ATGGGCTGAT-AAATACAAATGAAAGCATTCTAAGAGTGTGTAGAGGTAT  395
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATGGGCTGATAAAATACAAATGAAAGCATTCTAAGAGTGTGTAGAGGTAT  379

seq1  TTCTACTCTGGGAGTAGGAGACAGTGAGCAAGAAAGATAGGT-CCAAGGA  444
      |||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  TTCTACTCTGGGAGTAGGAGACAGTGAGCAAGAAAGATAGGTCCCAGGGA  429

seq1  AGTTATTAAAAACCAGGGTGTAGTGGCTATTCCTGGTTGTCAACTTGACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTAAAAACCAGGGTGTAGTGGCTATTCCTGGTTGTCAACTTGACA  479

seq1  ATATTTGGAATGAACTACAATCCGGAATTGGAAGGCTCACCAGTGACCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTGGAATGAACTACAATCCGGAATTGGAAGGCTCACCAGTGACCCT  529

seq1  TATCTTGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGGAGATCTTGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTGAGGCTTGGAGATCCTTATCTGGATCTTGGTTTGGAGATCTTGA  579

seq1  GCCATAGTGGCTATGGATTCCAGAAGATTGAATCTCCCAGTTTAAGGAAA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATAGTGGCTATGGATTCCAGAAGATTGAATCTCCCAGTTTAAGGAAA  629

seq1  ACACCTTTAATCTGGGCTACACCTTTCATCTGGGATTAAAGGTGTGGTGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAATCTGGGCTACACCTTTCATCTGGGATTAAAGGTGTGGTGG  679

seq1  AACACACCTTTAATCTGGGCTACACCTTCTGCTGGAGACAATATAAGGAC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACCTTTAATCTGGGCTACACCTTCTGCTGGAGACAATATAAGGAC  729

seq1  ATTGGAAGAAGGGAGTCTAGCTCTAGCTCTTGCTCCTTCGCCTGCTTGCT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGAAGGGAGTCTAGCTCTAGCTCTTGCTCCTTCGCCTGCTTGCT  779

seq1  GCGTGAGACTGAGTAGCTGCTAGATCCTTGGACTTCCATTCATAGCTGCG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGAGACTGAGTAGCTGCTAGATCCTTGGACTTCCATTCATAGCTGCG  829

seq1  ACTGAACCATTGTTGGGAATTGGGCTGCCGACTGTAAATCATCAATAAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAACCATTGTTGGGAATTGGGCTGCCGACTGTAAATCATCAATAAAT  879

seq1  TCCTTTACTATCTAGAGACTATCCATAAGTTCTGTGACTCTAGAGAACCC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACTATCTAGAGACTATCCATAAGTTCTGTGACTCTAGAGAACCC  929

seq1  TGACTAATACACAGGGCCCAAAGAAAATAAGATTCGTGATTAACAGTGAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAATACACAGGGCCCAAAGAAAATAAGATTCGTGATTAACAGTGAG  979

seq1  AAGAGTAGGTCTGGCAGAAGGAAGGGGGTGCCTTTGTAAAAACTGATATT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTAGGTCTGGCAGAAGGAAGGGGGTGCCTTTGTAAAAACTGATATT  1029

seq1  ACCAAAGGTGGACAGTGATGGAGTGAATTGACAGCACACAAACATTGAGC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGGTGGACAGTGATGGAGTGAATTGACAGCACACAAACATTGAGC  1079

seq1  CATACCTTTAAGTTTAAAAGCCAGTAGGGGGCAGTGACATGGCT-CTGCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||  ||||
seq2  CATACCTTTAAGTTTAAAAGCCAGTAGGGGGCAGTGACATGGCTAATGCA  1129

seq1  CTTGACAAGCCTGACAACCTGAATTC  1169
      ||||||||||||||||||||||||||
seq2  CTTGACAAGCCTGACAACCTGAATTC  1155

seq1: chr9_45950337_45950935
seq2: B6Ng01-111J19.g_70_668

seq1  GAATTCCCACAAACCAATTTATTTATGCCATGGAGCATTCAAGGACTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCACAAACCAATTTATTTATGCCATGGAGCATTCAAGGACTGCC  50

seq1  AGTAGGGCAGGCAGTGGTGAGGGCAAAATTGTGTAACCATTGAATGCTAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGGCAGGCAGTGGTGAGGGCAAAATTGTGTAACCATTGAATGCTAC  100

seq1  ACCGTGAGGTCCATGTTCCATTGAGAACTTTTATCTTGTTAAATTCTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGTGAGGTCCATGTTCCATTGAGAACTTTTATCTTGTTAAATTCTAGA  150

seq1  TCTTCAGGGACATTAACATAGCACATACTGTGTGCCAGCTTGCTGTCACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGGACATTAACATAGCACATACTGTGTGCCAGCTTGCTGTCACC  200

seq1  TTTAAAACATATGTTATTTTAACCACATACATTCTTTGTATCCTTCTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAACATATGTTATTTTAACCACATACATTCTTTGTATCCTTCTAAA  250

seq1  CAAAACTAGTATTCTCCCATCAAACTGGTTCATTATTATTATTATTATTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAACTAGTATTCTCCCATCAAACTGGTTCATTATTATTATTATTATTA  300

seq1  TTATTATTATTATTAATTATTGTTATTATTAGACTATGAAGACTAGTACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTATTATTAATTATTGTTATTATTAGACTATGAAGACTAGTACT  350

seq1  CTGCTCAGACTTTACATTGGAGGCAGATAACCACACCACTGTGCTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTCAGACTTTACATTGGAGGCAGATAACCACACCACTGTGCTTATCT  400

seq1  GATCACTGATCAAACAAATAGGAGCCATTTCCTCCCCAGTTAATTCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCACTGATCAAACAAATAGGAGCCATTTCCTCCCCAGTTAATTCCTCA  450

seq1  TTTGTTAGTCTGTAGTTTTGCTTTCTTAATATCATACATAGCTAGTTTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAGTCTGTAGTTTTGCTTTCTTAATATCATACATAGCTAGTTTAT  500

seq1  GTTTGTAATCTGTACAGGATGCCTGCAGAAGCCACTGTGCATTTCCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTAATCTGTACAGGATGCCTGCAGAAGCCACTGTGCATTTCCCTCA  550

seq1  GAGCGCCATTGGCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTT  599
      |||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  GAGCGCCATTGGCTCTCTTCTCTTCTCTTCTCTTCTCTTCTCTTATCTT  599