BAC Information

Click to search

BAC

Clone NameB6Ng01-111M05
Chromosome9 (Build37)
Map Location 52,760,073 - 52,947,551
singlet/doubletdoublet
Overlap geneDdx10
Upstream geneFdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Downstream geneExph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404, LOC100038958, Slc35f2, Sln, LOC100038996, Elmod1, Tnfaip8l3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-111M05.bB6Ng01-111M05.g
ACCDH918022DH918023
length1,136296
definitionDH918022|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M05, 5' end.DH918023|Mus musculus domesticus DNA, BAC clone: B6Ng01-111M05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,946,484 - 52,947,551)(52,760,073 - 52,760,368)
sequence
gaattctggtaaaatgtatatatatatattagaagactgaaattcaagaa
tttctataatcattgcctagaaaactgggaataatttttagtgtttgcac
acttacataattgtgtcaaattcttaaaattctattttagtagattatct
aaactaataagtatatatctaacagagtaccttacatttcaaaactataa
catggcattgtcatgtatgaatgtgttgagctagaatcatagctaccaca
gggttcctgtggcctctgggccacctcttggacacatctggctagattcc
tttgatgaatatattcctataggcagttgcctatttgacatctttatttg
gggtttaaaatgacaatctcaatatatttaaatgcaagcttcatatcttt
gtgacccaaatatgttattgccatgatcttccttatcccagaagataata
acccatctttccaccagctgaacagaaatcttaaaaatactgttgacttt
ctgttcatattcttccagggcttatcagaaagtgctatttattttacctt
aaaaattgaaaatttgctatagatcagatgtctgaagttattattaatta
atagtgacataacatggttagggttgtttttaatagttttcaaaaattgc
tttatttactttctaaatgttgccccccttcccagcccttcctccaagag
ttcttcaccgtattccctctcccccttgattctgaatgggtgctttcccc
ttctgtggggcatcaagtctctacagtattaggcacattctatcccactg
aagccaaacaagggagtcctctactacatatgtgctgagggccacagacc
agcccatgtgtgcactttggttggtgccttagtctctgggagctcccagg
agttcaggttagttgatactgttggtcttcctatagggttgcatctgttc
cttcaatcctttcctatctcttccatatgggtctcaaccttagtctaatg
gttggctgtaagtatctgcattttcttagtcagctgctggtagagcctct
ttagaggaaaggccttgctgggccctttgctgccaacacagcatagggtt
atccaaagttggtgcctgccatgggaaggtccctga
attaaatcttgtctcaaaactaagtgaaatgttatagtagggtgatagtc
aaagttaccttctggtacacacagaagttcacagacgtaagaatctgggg
aaatggccctaggggccactctcccaactatgtctggggtaacagaggtg
aaatacagattttaaaagatgttaacccgggaatactggaggggagtatg
tgctagctggggagaagtttcgaagtgtccaaccattgagctagtcaaga
catatcaaaattagctggtgtgtggtgtgtggtgtgtggtgtgtgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52946484_52947551
seq2: B6Ng01-111M05.b_114_1178 (reverse)

seq1  TCAGGGACCATCCCATGGGCAGGCACCAAACTCTGATAACACCATGCTGT  50
      ||||||||| |||||| ||||||||||||  |  |||||| | |||||||
seq2  TCAGGGACCTTCCCAT-GGCAGGCACCAACTTTGGATAACCCTATGCTGT  49

seq1  GTTTGCAGACAAGAGCCCAGCAAGG-CTATCCTCT-AAGAGGCTCTACCA  98
      ||| ||||  ||| ||||||||||| || |||||| ||||||||||||||
seq2  GTTGGCAGCAAAGGGCCCAGCAAGGCCTTTCCTCTAAAGAGGCTCTACCA  99

seq1  GCAGCTGACTAAGACAGATGCAGATACTTACAGCCAACCATTAGACTAAG  148
      |||||||||||||| | |||||||||||||||||||||||||||||||||
seq2  GCAGCTGACTAAGA-AAATGCAGATACTTACAGCCAACCATTAGACTAAG  148

seq1  GTTGGAGACCCATATGGAAGAGATAAGGAAAGGATTGAAGGAACAGATTG  198
      ||| |||||||||||||||||||| |||||||||||||||||||||| ||
seq2  GTT-GAGACCCATATGGAAGAGAT-AGGAAAGGATTGAAGGAACAGA-TG  195

seq1  CAACCCTATAGGAAGACCAACAGTATCAACTAACCTGAACTCCTGGGAGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTATAGGAAGACCAACAGTATCAACTAACCTGAACTCCTGGGAGC  245

seq1  TCCCAGAGACTAAGGCACCAACCAAAGTGCACACATGGGCTGGTCTGTGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGAGACTAAGGCACCAACCAAAGTGCACACATGGGCTGGTCTGTGG  295

seq1  CCCTCAGCACATATGTAGTAGAGGACTCCCTTGTTTGGCTTCAGTGGGAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCAGCACATATGTAGTAGAGGACTCCCTTGTTTGGCTTCAGTGGGAT  345

seq1  AGAATGTGCCTAATACTGTAGAGACTTGATGCCCCACAGAAGGGGAAAGC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTGCCTAATACTGTAGAGACTTGATGCCCCACAGAAGGGGAAAGC  395

seq1  ACCCATTCAGAATCAAGGGGGAGAGGGAATACGGTGAAGAACTCTTGGAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATTCAGAATCAAGGGGGAGAGGGAATACGGTGAAGAACTCTTGGAG  445

seq1  GAAGGGCTGGGAAGGGGGGCAACATTTAGAAAGTAAATAAAGCAATTTTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGCTGGGAAGGGGGGCAACATTTAGAAAGTAAATAAAGCAATTTTT  495

seq1  GAAAACTATTAAAAACAACCCTAACCATGTTATGTCACTATTAATTAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACTATTAAAAACAACCCTAACCATGTTATGTCACTATTAATTAATA  545

seq1  ATAACTTCAGACATCTGATCTATAGCAAATTTTCAATTTTTAAGGTAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTTCAGACATCTGATCTATAGCAAATTTTCAATTTTTAAGGTAAAA  595

seq1  TAAATAGCACTTTCTGATAAGCCCTGGAAGAATATGAACAGAAAGTCAAC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCACTTTCTGATAAGCCCTGGAAGAATATGAACAGAAAGTCAAC  645

seq1  AGTATTTTTAAGATTTCTGTTCAGCTGGTGGAAAGATGGGTTATTATCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTAAGATTTCTGTTCAGCTGGTGGAAAGATGGGTTATTATCTT  695

seq1  CTGGGATAAGGAAGATCATGGCAATAACATATTTGGGTCACAAAGATATG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATAAGGAAGATCATGGCAATAACATATTTGGGTCACAAAGATATG  745

seq1  AAGCTTGCATTTAAATATATTGAGATTGTCATTTTAAACCCCAAATAAAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTGCATTTAAATATATTGAGATTGTCATTTTAAACCCCAAATAAAG  795

seq1  ATGTCAAATAGGCAACTGCCTATAGGAATATATTCATCAAAGGAATCTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAATAGGCAACTGCCTATAGGAATATATTCATCAAAGGAATCTAG  845

seq1  CCAGATGTGTCCAAGAGGTGGCCCAGAGGCCACAGGAACCCTGTGGTAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATGTGTCCAAGAGGTGGCCCAGAGGCCACAGGAACCCTGTGGTAGC  895

seq1  TATGATTCTAGCTCAACACATTCATACATGACAATGCCATGTTATAGTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATTCTAGCTCAACACATTCATACATGACAATGCCATGTTATAGTTT  945

seq1  TGAAATGTAAGGTACTCTGTTAGATATATACTTATTAGTTTAGATAATCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATGTAAGGTACTCTGTTAGATATATACTTATTAGTTTAGATAATCT  995

seq1  ACTAAAATAGAATTTTAAGAATTTGACACAATTATGTAAGTGTGCAAACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAATAGAATTTTAAGAATTTGACACAATTATGTAAGTGTGCAAACA  1045

seq1  CTAAAAATTATTCCCAGTTT  1068
      ||||||||||||||||||||
seq2  CTAAAAATTATTCCCAGTTT  1065

seq1: chr9_52760073_52760368
seq2: B6Ng01-111M05.g_75_370

seq1  ATTAAATCTTGTCTCAAAACTAAGTGAAATGTTATAGTAGGGTGATAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAATCTTGTCTCAAAACTAAGTGAAATGTTATAGTAGGGTGATAGTC  50

seq1  AAAGTTACCTTCTGGTACACACAGAAGTTCACAGACGTAAGAATCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTACCTTCTGGTACACACAGAAGTTCACAGACGTAAGAATCTGGGG  100

seq1  AAATGGCCCTAGGGGCCACTCTCCCAACTATGTCTGGGGTAACAGAGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCCTAGGGGCCACTCTCCCAACTATGTCTGGGGTAACAGAGGTG  150

seq1  AAATACAGATTTTAAAAGATGTTAACCCGGGAATACTGGAGGGGAGTATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATACAGATTTTAAAAGATGTTAACCCGGGAATACTGGAGGGGAGTATG  200

seq1  TGCTAGCTGGGGAGAAGTTTCGAAGTGTCCAACCATTGAGCTAGTCAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGCTGGGGAGAAGTTTCGAAGTGTCCAACCATTGAGCTAGTCAAGA  250

seq1  CATATCAAAATTAGCTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGT  296
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCAAAATTAGCTGGTGTGTGGTGTGTGGTGTGTGGTGTGTGT  296