BAC Information

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BAC

Clone NameB6Ng01-112C19
Chromosome9 (Build37)
Map Location 33,869,644 - 34,003,531
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042343
Downstream geneKirrel3, St3gal4, Dcps, Tirap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112C19.bB6Ng01-112C19.g
ACCDH918312DH918313
length1,083909
definitionDH918312|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C19, 5' end.DH918313|Mus musculus domesticus DNA, BAC clone: B6Ng01-112C19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,869,644 - 33,870,732)(34,002,621 - 34,003,531)
sequence
gaattctaaacatctccttctcctccctgccttttactgatactgtcaga
caacccaagttcttgaaagagttcctttggaaagaaaaaacaaaacaaaa
caaaaacaacaacaaccctgaagcagctccaagaagggttgagggtgggg
actgtcaagatggaaaaggctcatcttgggttctttttaccctccaaagc
ttcacctcctataaccactctatacactaaagctcattaacaaggaaaga
ggaaagtctgcctttcaattctcaaagcagaggctttcaggaaagcaacc
ctgcaagtcaggaggtaatatcaacttcacaggaatgttttgggccacag
tgtaaaaacaggcactgagttggcttagagaatactcttaattcacaaaa
ccagctatgctagcttatttatacatactacaagttaattagaaggagct
gatctctaatctaccaaaaaaaaaaataacacaacaaaccttgctttctt
atgtttgggctccaggtgacatttcgtttgttcaggggattttgcctgct
ctctcctgtcatgagacactggtaaagatgtgtgccatcaacatgttcat
tctgtctgtcaaggactattagatgttcagacaggagatgcacagtgccc
cactcacggattttaatatacaggaggcttatatgttttaatgagacaca
tcctcaaatgtgacctgttagaaccccatcctaaaaaacaagtgctgggt
cctccagctctttgtgctgacatatcctggataaagggaatgccacgagc
aaaggtgtgtgtgcagatggcattcccacccctgctacctctcagcccca
ccctggagcaaggcctggaagccacctaccccagttagtcagtagttagg
gccctggatttgtccttcaagacaaagcattgggcttagaatgaaagttc
tcaatatgagacccttactttgcctgctctgggggagtagcttgagtgct
ccagagaagctgacattgcacagagaactttccctcccatccacatgaat
agaaagaaattgagaccatggagggagttaaaa
gaattcaatccctgcatttgattaatttatacatctgcaagccctgattt
aaatgtttcatctttattgaagccttttttgattacaccaggaaatcagt
aacaatttctcctagtatattttccactgattttcttttttaaatttatc
atccatagactagagaatatcactctaccttatgtctagttcaagttaac
attcaacaaaattgccagaaaaataaagtcatttacttaggcattaatta
tttctttaaaaatccaaagcctatttttaaatcttagattgactttctaa
ttttatttctctctttgtccttgtcttctgtgagttgtttgaccaaagtt
agaattattctctagaattatttgtaagttcttccatggcattttgttag
tggccattattgctataggatttatattctttgagaagacatgttatttt
gatttcttatgctatatttactctgtattagaatgttcatgttaacagtt
ttttggttaaatttttctttttctttttctttttctttttctttttcttt
tttccttttccttttctttttctttttctttttctttttctttttctttt
tctttttctttttctttttctttgcttcgtcttcgtcctctctctctctc
tctctctctctctctctctctctctctctctcattgttgctcaaaccatt
tttattctttctgcagaggtgtgcaaaacatttgggataaagataattct
acatgacgttgggatgttgatttataagttcaatatttgaaggatatagc
ctctatttgggtcttctcttctctgctgtagtctggtgtttcatcagtct
ggtcaaggatcctcaaaaaagtcttttagaagatgtcctgagtttcaaga
acaaaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_33869644_33870732
seq2: B6Ng01-112C19.b_47_1129

seq1  GAATTCTAAACATCTCCTTCTCCTCCCTGCCTTTTACTGATACTGTCAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAACATCTCCTTCTCCTCCCTGCCTTTTACTGATACTGTCAGA  50

seq1  CAACCCAAGTTCTTGAAAGAGTTCCTTTGGAAAGAAAAAACAAAACAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCAAGTTCTTGAAAGAGTTCCTTTGGAAAGAAAAAACAAAACAAAA  100

seq1  CAAAAACAACAACAACCCTGAAGCAGCTCCAAGAAGGGTTGAGGGTGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAACAACAACCCTGAAGCAGCTCCAAGAAGGGTTGAGGGTGGGG  150

seq1  ACTGTCAAGATGGAAAAGGCTCATCTTGGGTTCTTTTTACCCTCCAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCAAGATGGAAAAGGCTCATCTTGGGTTCTTTTTACCCTCCAAAGC  200

seq1  TTCACCTCCTATAACCACTCTATACACTAAAGCTCATTAACAAGGAAAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCTCCTATAACCACTCTATACACTAAAGCTCATTAACAAGGAAAGA  250

seq1  GGAAAGTCTGCCTTTCAATTCTCAAAGCAGAGGCTTTCAGGAAAGCAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCTGCCTTTCAATTCTCAAAGCAGAGGCTTTCAGGAAAGCAACC  300

seq1  CTGCAAGTCAGGAGGTAATATCAACTTCACAGGAATGTTTTGGGCCACAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTCAGGAGGTAATATCAACTTCACAGGAATGTTTTGGGCCACAG  350

seq1  TGTAAAAACAGGCACTGAGTTGGCTTAGAGAATACTCTTAATTCACAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAAACAGGCACTGAGTTGGCTTAGAGAATACTCTTAATTCACAAAA  400

seq1  CCAGCTATGCTAGCTTATTTATACATACTACAAGTTAATTAGAAGGAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTATGCTAGCTTATTTATACATACTACAAGTTAATTAGAAGGAGCT  450

seq1  GATCTCTAATCTACCAAAAAAAAAAATAACACAACAAACCTTGCTTTCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTAATCTACCAAAAAAAAAAATAACACAACAAACCTTGCTTTCTT  500

seq1  ATGTTTGGGCTCCAGGTGACATTTCGTTTGTTCAGGGGATTTTGCCTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGGGCTCCAGGTGACATTTCGTTTGTTCAGGGGATTTTGCCTGCT  550

seq1  CTCTCCTGTCATGAGACACTGGTAAAGATGTGTGCCATCAACATGTTCAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCTGTCATGAGACACTGGTAAAGATGTGTGCCATCAACATGTTCAT  600

seq1  TCTGTCTGTCAAGGACTATTAGATGTTCAGACAGGAGATGCACAGTGCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCAAGGACTATTAGATGTTCAGACAGGAGATGCACAGTGCCC  650

seq1  CACTCACGGATTTTAATATACAGGAGGCTTATATGTTTTAATGAGACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCACGGATTTTAATATACAGGAGGCTTATATGTTTTAATGAGACACA  700

seq1  TCCTCAAATGTGACCTGTTAGAACCCCATCCTAAAAAACAAGTGCTGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCAAATGTGACCTGTTAGAACCCCATCCTAAAAAACAAGTGCTGGGT  750

seq1  CCTCCAGCTCTTTGTGCTGACATATCCTGGATAAAGGGAATGCCACGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCTCTTTGTGCTGACATATCCTGGATAAAGGGAATGCCACGAGC  800

seq1  AAAGGTGTGTGTGCAGATGGCATTCCCACCCCTGCTACCTCTCAGCCCCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTGTGTGTGCAGATGGCATTCCCACCCCTGCTACCTCTCAGCCCCA  850

seq1  CCCTGGAGCAAGGCCTGGAAGCCACCTACCCCAGTTAGTCAGTAGTTAGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGAGCAAGGCCTGGAAGCCACCTACCCCAGTTAGTCAGTAGTTAGG  900

seq1  GCCCTGGATTTGTCCTTCAAGACAAAGCAATTGGGCTTAGAATGGAAAGT  950
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  GCCCTGGATTTGTCCTTCAAGACAAAGC-ATTGGGCTTAGAAT-GAAAGT  948

seq1  TCTCAATATGAGACCCTTACTTTGCCTGCTCTGGGGGAGGTAGCTTGAGT  1000
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TCTCAATATGAGACCCTTACTTTGCCTGCTCTGGGGGA-GTAGCTTGAGT  997

seq1  GCTCCAGAGAAGCTGACAATGGCACAGAG-ACTTTCCCTCCCATCCACAT  1049
      ||||||||||||||||| || |||||||| ||||||||||||||||||||
seq2  GCTCCAGAGAAGCTGAC-ATTGCACAGAGAACTTTCCCTCCCATCCACAT  1046

seq1  GAGTAGACAGAAAATGAGGAGCAATGGGAGGGAGTTAAAA  1089
      || |||| ||||| ||| || ||   ||||||||||||||
seq2  GAATAGAAAGAAATTGA-GACCA--TGGAGGGAGTTAAAA  1083

seq1: chr9_34002621_34003531
seq2: B6Ng01-112C19.g_68_976 (reverse)

seq1  CCTATTTGTTCTTGAAACTCAGGACATACTACTAAAAGTATTCTTTTGAG  50
      ||| ||||||||||||||||||||||| || ||||||| | | |||||||
seq2  CCTTTTTGTTCTTGAAACTCAGGACAT-CTTCTAAAAG-ACTTTTTTGAG  48

seq1  GATCCTTGACCAGACTGATGAAAACACCAGACTACAGCAGAGAAGAGAAG  100
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GATCCTTGACCAGACTGATG-AAACACCAGACTACAGCAGAGAAGAGAAG  97

seq1  ACCCAAATAGAGGCTATATCC-TCAAATATTGAACATAATAAATCAACAT  149
      ||||||||||||||||||||| ||||||||||||| | ||||||||||||
seq2  ACCCAAATAGAGGCTATATCCTTCAAATATTGAAC-TTATAAATCAACAT  146

seq1  -CCAACGTCATGTAGAATTATCTTTATCCCAAATGTTTTGCACACCTCTG  198
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACGTCATGTAGAATTATCTTTATCCCAAATGTTTTGCACACCTCTG  196

seq1  CAGAAAGAAGAAAAATGGTTTGAACAACAATGAGAGAGAGAGAGAGAGAG  248
      ||||||||| ||||||||||||| ||||||||||||||||||||||||||
seq2  CAGAAAGAATAAAAATGGTTTGAGCAACAATGAGAGAGAGAGAGAGAGAG  246

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGGACGAAGACGAAGCAAAGAAAAAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGGACGAAGACGAAGCAAAGAAAAAG  296

seq1  AAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAA  346

seq1  AAGGAAAAGGAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAAGGAAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAAAAGAAA  396

seq1  AATTTAACCAAAAAACTGTTAACATGAACATTCTAATACAGAGTAAATAT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAACCAAAAAACTGTTAACATGAACATTCTAATACAGAGTAAATAT  446

seq1  AGCATAAGAAATCAAAATAACATGTCTTCTCAAAGAATATAAATCCTATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAGAAATCAAAATAACATGTCTTCTCAAAGAATATAAATCCTATA  496

seq1  GCAATAATGGCCACTAACAAAATGCCATGGAAGAACTTACAAATAATTCT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATAATGGCCACTAACAAAATGCCATGGAAGAACTTACAAATAATTCT  546

seq1  AGAGAATAATTCTAACTTTGGTCAAACAACTCACAGAAGACAAGGACAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATAATTCTAACTTTGGTCAAACAACTCACAGAAGACAAGGACAAA  596

seq1  GAGAGAAATAAAATTAGAAAGTCAATCTAAGATTTAAAAATAGGCTTTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAATAAAATTAGAAAGTCAATCTAAGATTTAAAAATAGGCTTTGG  646

seq1  ATTTTTAAAGAAATAATTAATGCCTAAGTAAATGACTTTATTTTTCTGGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAAGAAATAATTAATGCCTAAGTAAATGACTTTATTTTTCTGGC  696

seq1  AATTTTGTTGAATGTTAACTTGAACTAGACATAAGGTAGAGTGATATTCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGTTGAATGTTAACTTGAACTAGACATAAGGTAGAGTGATATTCT  746

seq1  CTAGTCTATGGATGATAAATTTAAAAAAGAAAATCAGTGGAAAATATACT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTATGGATGATAAATTTAAAAAAGAAAATCAGTGGAAAATATACT  796

seq1  AGGAGAAATTGTTACTGATTTCCTGGTGTAATCAAAAAAGGCTTCAATAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAAATTGTTACTGATTTCCTGGTGTAATCAAAAAAGGCTTCAATAA  846

seq1  AGATGAAACATTTAAATCAGGGCTTGCAGATGTATAAATTAATCAAATGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAACATTTAAATCAGGGCTTGCAGATGTATAAATTAATCAAATGC  896

seq1  AGGGATTGAATTC  911
      |||||||||||||
seq2  AGGGATTGAATTC  909