BAC Information

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BAC

Clone NameB6Ng01-112M04
Chromosome9 (Build37)
Map Location 111,526,776 - 111,528,028
singlet/doubletsinglet
Overlap geneStac
Upstream geneNradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-112M04.g
ACCDH918740
length1,245
definitionDH918740|Mus musculus domesticus DNA, BAC clone: B6Ng01-112M04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcacacttgagacagatgccacactgtcctatccagttgatagtga
tgggcgccctggcacatcatgtccactcactaatgtgtgcttgctgggct
taacttccaaatttttgacatggtagttgcatggttcttctttgataatt
ccacacatctgtgtaatcgttcttattacccttactctctaccttaccgg
aggtccctcccactcctgtcagttcccctccctcctccagaccttttttc
atgcccacgtccttttgttttcctttgtgacccactgagtatcaccagag
ccatctgggtgcccgtgggaatggaacccattggagcctgatggtcttcc
agactctgctatgttctctttctaaagcagacatgctaggaattttatgt
gcattttttttgactgaaccaactttttaaaaattccatctgttttcaaa
tatttggccttcctggactgctcagatggctcatcaagcctcataccctg
actttgcactccaagagtcacgtggtacaaggagagagagaaccaactcc
agcaagcatttctctgacctctacacacacacacacacacacacacacac
atacacacacatgcatgcacacacaaacacacactaaacagataaatcaa
tagcatgtgaaattaaataattaattaattgaaggtaatcaaataatctg
gttcttctgcctcccatcccccaccaccatgtgtattcacacatatgtgc
atgttttttatgctacttaagaggtttttccggccaggcagtggtggtgc
actcctttaatcccagcacttgggaggcagaggctggcagatttctgagt
tcgaggccagcctggtctacagagtgagttctaggaaacccaaaactaca
cagagaaaccctgtctcaaaacacaaacaaacaaacaaacaaaaaaccca
gaaaaagaaaaagagtctttccatgtaatggacctcctgtgttcaaaaat
atggatgtcttctactaattgccataatcattccttattctacatttcct
caggtaaaactacatttagcattttgattaagtaagtggcatatttttac
aggggtatttaccaaaccctcaatcccaatcaaacctaaataacagagtt
tttccgaattacgggttttatttttagtcaattttttgggatgggactga
cccagaacttccgcgcactgtacagagggtcacactctaccacta
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111526776_111528028
seq2: B6Ng01-112M04.g_70_1314 (reverse)

seq1  TAGTGGTAGAAGTG-GACTCT-TGTCCAGCGTGCAGGAGGTCCTGGGTTC  48
      ||||||||| |||| ||| || ||| ||| | || ||| || ||||||  
seq2  TAGTGGTAG-AGTGTGACCCTCTGTACAGTGCGC-GGAAGTTCTGGGT--  46

seq1  AAGTCCCATCACCACAAAATGACATTAAAATAAAACCGGTAAAATCTGGA  98
       ||||||||| | | ||| |||| | ||||||||||| || || || | |
seq2  CAGTCCCATCCCAAAAAATTGAC-TAAAAATAAAACCCGT-AATTCGGAA  94

seq1  AAACACTGTTATTAGGTTTTGATTGGGATTGAGAGTTTGGTAAATACACC  148
      |||| ||||||||  | |||||||||||||||| ||||||||||||| ||
seq2  AAACTCTGTTATTTAGGTTTGATTGGGATTGAGGGTTTGGTAAATACCCC  144

seq1  TGTAAAAATAATGCACTTACTTTAAATCAAAATGCTAAATGTAGTTTTAC  198
      ||||||||||   |||||||||  ||||||||||||||||||||||||||
seq2  TGTAAAAATATGCCACTTACTT--AATCAAAATGCTAAATGTAGTTTTAC  192

seq1  TTGA-GAAATGTAGAATAAGGAATGATTATGGCAATTAGTAGAAGAACAT  247
       ||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  CTGAGGAAATGTAGAATAAGGAATGATTATGGCAATTAGTAGAAG-ACAT  241

seq1  CCATATTTTTGAAACACAGGA-GTTCATTACATGGAAAGAACTCTTTTTC  296
      ||||||||||| ||||||||| || |||||||||||||| ||||||||||
seq2  CCATATTTTTG-AACACAGGAGGTCCATTACATGGAAAG-ACTCTTTTTC  289

seq1  TTTTTCTGGGTTTTTTGTTTGTTTGTTTGTTTGTGTTTTTGAGACAGGGT  346
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTTTTCTGGGTTTTTTGTTTGTTTGTTTGTTTGTG-TTTTGAGACAGGGT  338

seq1  TTCTCTGTGTAGTTTTGGGTTTCCTAGAACTCACTCTGTAGACCAGGCTG  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTGTAGTTTTGGGTTTCCTAGAACTCACTCTGTAGACCAGGCTG  388

seq1  GCCTCGAACTCAGAAATCTGCCAGCCTCTGCCTCCCAAGTGCTGGGATTA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGAACTCAGAAATCTGCCAGCCTCTGCCTCCCAAGTGCTGGGATTA  438

seq1  AAGGAGTGCACCACCACTGCCTGGCCGGAAAAACCTCTTAAGTAGCATAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGTGCACCACCACTGCCTGGCCGGAAAAACCTCTTAAGTAGCATAA  488

seq1  AAAACATGCACATATGTGTGAATACACATGGTGGTGGGGGATGGGAGGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGCACATATGTGTGAATACACATGGTGGTGGGGGATGGGAGGCA  538

seq1  GAAGAACCAGATTATTTGATTACCTTCAATTAATTAATTATTTAATTTCA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAACCAGATTATTTGATTACCTTCAATTAATTAATTATTTAATTTCA  588

seq1  CATGCTATTGATTTATCTGTTTAGTGTGTGTTTGTGTGTGCATGCATGTG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCTATTGATTTATCTGTTTAGTGTGTGTTTGTGTGTGCATGCATGTG  638

seq1  TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGGTCAGAGAAAT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGGTCAGAGAAAT  688

seq1  GCTTGCTGGAGTTGGTTCTCTCTCTCCTTGTACCACGTGACTCTTGGAGT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCTGGAGTTGGTTCTCTCTCTCCTTGTACCACGTGACTCTTGGAGT  738

seq1  GCAAAGTCAGGGTATGAGGCTTGATGAGCCATCTGAGCAGTCCAGGAAGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGTCAGGGTATGAGGCTTGATGAGCCATCTGAGCAGTCCAGGAAGG  788

seq1  CCAAATATTTGAAAACAGATGGAATTTTTAAAAAGTTGGTTCAGTCAAAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATATTTGAAAACAGATGGAATTTTTAAAAAGTTGGTTCAGTCAAAA  838

seq1  AAAATGCACATAAAATTCCTAGCATGTCTGCTTTAGAAAGAGAACATAGC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGCACATAAAATTCCTAGCATGTCTGCTTTAGAAAGAGAACATAGC  888

seq1  AGAGTCTGGAAGACCATCAGGCTCCAATGGGTTCCATTCCCACGGGCACC  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCTGGAAGACCATCAGGCTCCAATGGGTTCCATTCCCACGGGCACC  938

seq1  CAGATGGCTCTGGTGATACTCAGTGGGTCACAAAGGAAAACAAAAGGACG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCTCTGGTGATACTCAGTGGGTCACAAAGGAAAACAAAAGGACG  988

seq1  TGGGCATGAAAAAAGGTCTGGAGGAGGGAGGGGAACTGACAGGAGTGGGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCATGAAAAAAGGTCTGGAGGAGGGAGGGGAACTGACAGGAGTGGGA  1038

seq1  GGGACCTCCGGTAAGGTAGAGAGTAAGGGTAATAAGAACGATTACACAGA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCCGGTAAGGTAGAGAGTAAGGGTAATAAGAACGATTACACAGA  1088

seq1  TGTGTGGAATTATCAAAGAAGAACCATGCAACTACCATGTCAAAAATTTG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGGAATTATCAAAGAAGAACCATGCAACTACCATGTCAAAAATTTG  1138

seq1  GAAGTTAAGCCCAGCAAGCACACATTAGTGAGTGGACATGATGTGCCAGG  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTTAAGCCCAGCAAGCACACATTAGTGAGTGGACATGATGTGCCAGG  1188

seq1  GCGCCCATCACTATCAACTGGATAGGACAGTGTGGCATCTGTCTCAGGTG  1246
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCGCCCATCACTATCAACTGGATAGGACAGTGTGGCATCTGTCTCAAGTG  1238

seq1  TGAATTC  1253
      |||||||
seq2  TGAATTC  1245