BAC Information

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BAC

Clone NameB6Ng01-113A14
Chromosome9 (Build37)
Map Location 47,346,584 - 47,367,321
singlet/doubletdoublet
Overlap geneCadm1
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113A14.bB6Ng01-113A14.g
ACCDH918934DH918935
length1,1981,073
definitionDH918934|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A14, 5' end.DH918935|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,366,118 - 47,367,321)(47,346,584 - 47,347,666)
sequence
gaattctccagattttcacttcagacagcagctattatgcttcctaggag
caagacaggcttatctgattgaactttttggaggcaggagcccgtgtgtt
agcaatgccgacccaaaccattactcccaaagatgtcagctagcattcgg
catttgagtgctaagaatccaccatggctggaaatatttccatcctcaag
acaaacaaacaaaagcttcctctttccccctcctcctgttgtgggtggtt
ctgcacactgcaggtagaagaatggcagacagaaactcggtattggcgat
tttttttttgtctctgtgtgatctttaacacaaacttgagggcacagact
attaatgtgagtgaacaagttccagcaggttcagctccataacaaccaga
agtgtacctaccacgatgttctaagcatgccttaatacaagagacgccag
ccattagcaacacgtgcacaggtctcctgcaagtacatgtttttcatgtt
gtctgtcttctgtgctgttcctttaactttgctattccaattcattaaac
taaaagaataataatgtgaattaatgaggcattactgtggcctcggtctt
taatacgcaattcacattcaaatcaaatcaatacttttatcaagaactaa
ttatgtcctggttgcagagcaggcttccacagtaaattcaagacattttt
actagctgtactctcaagagtcttaaaaatataaacttatgtgtggttat
atgaatccaaaaacgaaagttgaaattcaattatagacatattaagaaca
aaccaacactaatttatcaaaactttaaaaaaaatggccaaggctaaata
ttcaagataatttccatcgtgtttgtaatgaacttgggctaatttgtgac
ttacttgcattttgttttttttctacaggtttaccataccttaagggcta
tatcacaatgggcatacgttctctacaggtacatcagtggatggttgcag
aagggagaaagagcctgcagggatagcttgaagaaagtaaccggaagttg
aaccttcagttgtgctagctatactgggggagactacaaattacctgctc
ctgtcccttactctgcagaactatttggacaaattgcagagagcctgctt
aagactccctactttaaaacgtccggaagaagatgcctccagcatgcc
gaattcctctcaggacagcatcatggagcttccctttcagaagcctactc
tcaaattcttgttttcttgcttcaaattcagtctctgagctgcttgtctt
tcggcggttccttcctccgttgctctctcgtttcctctctaattgccttc
atttcttattacttttcagcccaaccctgatgggactggaagactgatga
ctctgcaatgaacccgaggaagagagtggttctgcccatcagcttccgct
ggtcgccatggcatagaacgggcctgcttttcctttaactgtctgtcttg
gctcataggtgaaggatggctgtctctcctcagctccttggagagtagat
acctttcccttttgactttcattttacccagcctgcacttctctaaagaa
ggcttccctgagggcctttctttctctgttttacaggtgtgtggggggcc
gtgtttctttatgccaattagagattgtgacataagttgtcagtatcgcg
gtcataaattctcatggaatgtttgagcttcagaacgttgagaacacatt
gtggccttttggtggaacctgtttgaatgctgtgctttattctagcctaa
agacaaacggtgtaagtgacttaaattacagtctgtcaaagtaacacttt
gagcccccaagtgaagttttcaaaggaggaccgtctctcaagggtgagaa
agcaaaatcaaaggactgttgtgtagatctcctggcttggtatgagatca
gccgctgtgaaggtgatccgggaaatgccaccttgcagatggcatcttga
tgcttacatctggtgcacgtagctaccaggaaaaacccacctaagaggcg
gcagaagagtgctccctggcctctgtcagttagtgttcaaacttagtcag
tttgggagtagggctgttgaactcaacacagtcgtgccagctttttattt
ttttttttttggtagataataatgaagacaagttatcattggctcataaa
caaaaccatggagtctttgttctccggtctcactggttgactgcctgcta
gagggttccttttggaggatctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_47366118_47367321
seq2: B6Ng01-113A14.b_48_1245 (reverse)

seq1  GGCATGCTTGAAAGCCATCTTTCTTTCCGGACAGTTTTTAAGTAGGAAGT  50
      |||||||| |  || ||||||   |||||||| ||||| ||||||| |||
seq2  GGCATGCTGG--AGGCATCTT--CTTCCGGAC-GTTTTAAAGTAGGGAGT  45

seq1  CTTTAGCAGGCTCTCTCGCAACTGTGT-CAAATAG-TCTGCCAGAGT-AG  97
      ||| |||||||||||| |||| | ||| ||||||| |||| |||||| ||
seq2  CTTAAGCAGGCTCTCT-GCAA-TTTGTCCAAATAGTTCTG-CAGAGTAAG  92

seq1  GGACAGGAGCAGGTTAAATTTGTAGTCT-CCCCAGTATAGCTTAGCACTA  146
      ||||||||||||||  |||||||||||| |||||||||||| |||||| |
seq2  GGACAGGAGCAGGT--AATTTGTAGTCTCCCCCAGTATAGC-TAGCACAA  139

seq1  CTGAAGGTTCAACTCCGGGTTACTTTCTTC-AGCTATCCCTGCAGGCTCC  195
      |||||||||||||| | ||||||||||||| ||||||||||||||||| |
seq2  CTGAAGGTTCAACTTCCGGTTACTTTCTTCAAGCTATCCCTGCAGGCT-C  188

seq1  TGTCTCCCTTCTGCAACCATCCACTGATGTACCTGTAGAGAACGTATGCC  245
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCTTCTGCAACCATCCACTGATGTACCTGTAGAGAACGTATGCC  238

seq1  CATTGTGATATAGCCCTTAAGGTATGGTAAACCTGTAAGAAAAAAACAAA  295
      |||||||||||||||||||||||||||||||||||||  |||||||||||
seq2  CATTGTGATATAGCCCTTAAGGTATGGTAAACCTGTAGAAAAAAAACAAA  288

seq1  ATGCAAGTAAGTCACAAATTAG-CCAAGTTCATTTACAAACACGATGGAA  344
      |||||||||||||||||||||| ||||||||| |||||||||||||||||
seq2  ATGCAAGTAAGTCACAAATTAGCCCAAGTTCA-TTACAAACACGATGGAA  337

seq1  ATTATCTTGAATATTTAGCCTTGGCCATTTTTTTTAAAGTTTTGATAAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATCTTGAATATTTAGCCTTGGCCATTTTTTTTAAAGTTTTGATAAAT  387

seq1  TAGTGTTGGTTTGTTCTTAATATGTCTATAATTGAATTTCAACTTTCGTT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTTGGTTTGTTCTTAATATGTCTATAATTGAATTTCAACTTTCGTT  437

seq1  TTTGGATTCATATAACCACACATAAG-TTATATTTTTAAGACTCTTGAGA  493
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TTTGGATTCATATAACCACACATAAGTTTATATTTTTAAGACTCTTGAGA  487

seq1  GTACAGCTAGTAAAAATGTCTTGAATTTACTGTGGAAGCCTGCTCTGCAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGCTAGTAAAAATGTCTTGAATTTACTGTGGAAGCCTGCTCTGCAA  537

seq1  CCAGGACATAATTAGTTCTTGATAAAAGTATTGATTTGATTTGAATGTGA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGACATAATTAGTTCTTGATAAAAGTATTGATTTGATTTGAATGTGA  587

seq1  ATTGCGTATTAAAGACCGAGGCCACAGTAATGCCTCATTAATTCACATTA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCGTATTAAAGACCGAGGCCACAGTAATGCCTCATTAATTCACATTA  637

seq1  TTATTCTTTTAGTTTAATGAATTGGAATAGCAAAGTTAAAGGAACAGCAC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTTTTAGTTTAATGAATTGGAATAGCAAAGTTAAAGGAACAGCAC  687

seq1  AGAAGACAGACAACATGAAAAACATGTACTTGCAGGAGACCTGTGCACGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGACAGACAACATGAAAAACATGTACTTGCAGGAGACCTGTGCACGT  737

seq1  GTTGCTAATGGCTGGCGTCTCTTGTATTAAGGCATGCTTAGAACATCGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAATGGCTGGCGTCTCTTGTATTAAGGCATGCTTAGAACATCGTG  787

seq1  GTAGGTACACTTCTGGTTGTTATGGAGCTGAACCTGCTGGAACTTGTTCA  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTACACTTCTGGTTGTTATGGAGCTGAACCTGCTGGAACTTGTTCA  837

seq1  CTCACATTAATAGTCTGTGCCCTCAAGTTTGTGTTAAAGATCACACAGAG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACATTAATAGTCTGTGCCCTCAAGTTTGTGTTAAAGATCACACAGAG  887

seq1  ACAAAAAAAAAATCGCCAATACCGAGTTTCTGTCTGCCATTCTTCTACCT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAAAAAAATCGCCAATACCGAGTTTCTGTCTGCCATTCTTCTACCT  937

seq1  GCAGTGTGCAGAACCACCCACAACAGGAGGAGGGGGAAAGAGGAAGCTTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGCAGAACCACCCACAACAGGAGGAGGGGGAAAGAGGAAGCTTT  987

seq1  TGTTTGTTTGTCTTGAGGATGGAAATATTTCCAGCCATGGTGGATTCTTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGTTTGTCTTGAGGATGGAAATATTTCCAGCCATGGTGGATTCTTA  1037

seq1  GCACTCAAATGCCGAATGCTAGCTGACATCTTTGGGAGTAATGGTTTGGG  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTCAAATGCCGAATGCTAGCTGACATCTTTGGGAGTAATGGTTTGGG  1087

seq1  TCGGCATTGCTAACACACGGGCTCCTGCCTCCAAAAAGTTCAATCAGATA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCATTGCTAACACACGGGCTCCTGCCTCCAAAAAGTTCAATCAGATA  1137

seq1  AGCCTGTCTTGCTCCTAGGAAGCATAATAGCTGCTGTCTGAAGTGAAAAT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGTCTTGCTCCTAGGAAGCATAATAGCTGCTGTCTGAAGTGAAAAT  1187

seq1  CTGGAGAATTC  1204
      |||||||||||
seq2  CTGGAGAATTC  1198

seq1: chr9_47346584_47347666
seq2: B6Ng01-113A14.g_68_1140

seq1  GAATTCCTCTCAGGACAGCATCATGGAGCTTCCCTTTCAGAAGCCTACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTCAGGACAGCATCATGGAGCTTCCCTTTCAGAAGCCTACTC  50

seq1  TCAAATTCTTGTTTTCTTGCTTCAAATTCAGTCTCTGAGCTGCTTGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTTGTTTTCTTGCTTCAAATTCAGTCTCTGAGCTGCTTGTCTT  100

seq1  TCGGCGGTTCCTTCCTCCGTTGCTCTCTCGTTTCCTCTCTAATTGCCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGGCGGTTCCTTCCTCCGTTGCTCTCTCGTTTCCTCTCTAATTGCCTTC  150

seq1  ATTTCTTATTACTTTTCAGCCCAACCCTGATGGGACTGGAAGACTGATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTATTACTTTTCAGCCCAACCCTGATGGGACTGGAAGACTGATGA  200

seq1  CTCTGCAATGAACCCGAGGAAGAGAGTGGTTCTGCCCATCAGCTTCCGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCAATGAACCCGAGGAAGAGAGTGGTTCTGCCCATCAGCTTCCGCT  250

seq1  GGTCGCCATGGCATAGAACGGGCCTGCTTTTCCTTTAACTGTCTGTCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCCATGGCATAGAACGGGCCTGCTTTTCCTTTAACTGTCTGTCTTG  300

seq1  GCTCATAGGTGAAGGATGGCTGTCTCTCCTCAGCTCCTTGGAGAGTAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATAGGTGAAGGATGGCTGTCTCTCCTCAGCTCCTTGGAGAGTAGAT  350

seq1  ACCTTTCCCTTTTGACTTTCATTTTACCCAGCCTGCACTTCTCTAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTTCCCTTTTGACTTTCATTTTACCCAGCCTGCACTTCTCTAAAGAA  400

seq1  GGCTTCCCTGAGGGCCTTTCTTTCTCTGTTTTACAGGTGTGTGGGGGGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCCTGAGGGCCTTTCTTTCTCTGTTTTACAGGTGTGTGGGGGGCC  450

seq1  GTGTTTCTTTATGCCAATTAGAGATTGTGACATAAGTTGTCAGTATCGCG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTTCTTTATGCCAATTAGAGATTGTGACATAAGTTGTCAGTATCGCG  500

seq1  GTCATAAATTCTCATGGAATGTTTGAGCTTCAGAACGTTGAGAACACATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAAATTCTCATGGAATGTTTGAGCTTCAGAACGTTGAGAACACATT  550

seq1  GTGGCCTTTTGGTGGAACCTGTTTGAATGCTGTGCTTTATTCTAGCCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCCTTTTGGTGGAACCTGTTTGAATGCTGTGCTTTATTCTAGCCTAA  600

seq1  AGACAAACGGTGTAAGTGACTTAAATTACAGTCTGTCAAAGTAACACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAACGGTGTAAGTGACTTAAATTACAGTCTGTCAAAGTAACACTTT  650

seq1  GAGCCCCCAAGTGAAGTTTTCAAAGGAGGACCGTCTCTCAAGGGTGAGAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCCCCAAGTGAAGTTTTCAAAGGAGGACCGTCTCTCAAGGGTGAGAA  700

seq1  AGCAAAATCAAAGGACTGTTGTGTAGATCTCCTGGCTTGGTATGAGATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAATCAAAGGACTGTTGTGTAGATCTCCTGGCTTGGTATGAGATCA  750

seq1  GCCGCTGTGAAGGTGATCCGGGAAATGCCACCTTGCAGATGGCATCTTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCGCTGTGAAGGTGATCCGGGAAATGCCACCTTGCAGATGGCATCTTGA  800

seq1  TGCTTACATCTGGTGCACGTAGCTACCAGGAAAAACCCACCTAAGAGGCG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTACATCTGGTGCACGTAGCTACCAGGAAAAACCCACCTAAGAGGCG  850

seq1  GCAGAAGAGTGCTCCCTGGCCTCTGTCAGTTAGTGTTCAAACTTAGTCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGAGTGCTCCCTGGCCTCTGTCAGTTAGTGTTCAAACTTAGTCAG  900

seq1  TTTGGGAGTAGGGCTGTTGAACTCAACACAGTCGTGCCAGCTTTTTTTTT  950
      |||||||||||||||||||||||||||||||||||||||||        |
seq2  TTTGGGAGTAGGGCTGTTGAACTCAACACAGTCGTGCCAGC--------T  942

seq1  TTTTTTTTTTTTTTTTTTGGTAGATAATAATAGAGGACAAGTTATCATTG  1000
      |||| |||||||||||||||||||||||||| || |||||||||||||||
seq2  TTTTATTTTTTTTTTTTTGGTAGATAATAAT-GAAGACAAGTTATCATTG  991

seq1  GCTCAATAAACAAAACCATGGAGTTCTTGTTTCTCGGTCTCACTGTTGAA  1050
      |||| |||||||||||||||||||  |||||   ||||||||||| |  |
seq2  GCTC-ATAAACAAAACCATGGAGTCTTTGTTCTCCGGTCTCACTGGTTGA  1040

seq1  CTTGCTGTCTGAGGGGTCCTTTTGGAGGATCTG  1083
      ||  |||   ||||| |||||||||||||||||
seq2  CTGCCTGCTAGAGGGTTCCTTTTGGAGGATCTG  1073