BAC Information

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BAC

Clone NameB6Ng01-113A16
Chromosome9 (Build37)5 (Build37)
Map Location 28,158,928 - 28,159,968126,487,185 - 126,487,275
singlet/doubletsingletsinglet
Overlap geneOpcml
Upstream geneSpata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113A16.bB6Ng01-113A16.g
ACCDH918938DH918939
length1,049206
definitionDH918938|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A16, 5' end.DH918939|Mus musculus domesticus DNA, BAC clone: B6Ng01-113A16, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(28,158,928 - 28,159,968)(126,487,185 - 126,487,275)
sequence
gaattccagttgaaattcatagtttggagaccagtgcatctgttttctac
agtgatggctgcaccagctcaagaagactggagtaagtacatgtgcatat
gaacctgcccccttctgccttttctcctattggcactcttagaaaattgg
ctggtgctgctcctattcaaagtggggctttcctagtcagttctccagca
caaattttggttgtctctagaaatatccttaatagacaccctcaaaggca
tgctctaagtttgtaggctgctctgcctcagatcgacttggcaatcatgg
gatcccttaatccactggcttcgagttaattacaaacagatcatcgcact
tatactatccccacctatttcagaccttgggaagagactgatttataatg
agaggggtctctcttggcaagctcagatgagccaacaggtatgctgagag
ttgtggagtagatagtttgtggtaagtgtctttgggtggctaccgtagct
aacagtagtgaattgctttcagctagcacaagaatggaaattttagtgac
ttgaaagtaggtaagagcatgaactgcttttccatgagacctgggttcaa
ttgccatcacctacatggtggctcgaaactgtatctttagtatcatggga
tctctaatcctcatccagtcttgtgggtaactgcatgcacatgacagaca
tacatgtaagtaaaacactcatgctcatgaaaataaaagggattttttaa
aggagagaacgggaaccttagtttcattcattcaaagaactgaagtctac
cagtctgcattaaacttgaagaaaacttcagactcagaaaagaacctggc
ttagtccaccccctgacttgattgcattggtttgaaaaccataagtagat
gtctttaattgagtttctattcacaggttctctgatttagatgatttgag
gttgttttcaagtcaattattttgtggttcatccattattatcaagagga
gtgtttgttctgactaagaaattcccagtaagaattggtggattaaacc
cttctggaggtctcactcatcatcagacactctgtgttagttccttctac
caagagtaggccccctactggctgtccaatgcaaagaggccagccctgaa
accatagaatcacaaacaacaaaaacagactcagcaggttgtgtttctat
ctgtgagtgtgtgtgtgtgtgtgtgtgcgagagagagagagagagagaga
gagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_28158928_28159968
seq2: B6Ng01-113A16.b_45_1093

seq1  GAATTCCAGTTGAAATTCATAGTTTGGAGACCAGTGCATCTGTTTTCTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTTGAAATTCATAGTTTGGAGACCAGTGCATCTGTTTTCTAC  50

seq1  AGTGATGGCTGCACCAGCTCAAGAAGACTGGAGTAAGTACATGTGCATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCTGCACCAGCTCAAGAAGACTGGAGTAAGTACATGTGCATAT  100

seq1  GAACCTGCCCCCTTCTGCCTTTTCTCCTATTGGCACTCTTAGAAAATTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCTGCCCCCTTCTGCCTTTTCTCCTATTGGCACTCTTAGAAAATTGG  150

seq1  CTGGTGCTGCTCCTATTCAAAGTGGGGCTTTCCTAGTCAGTTCTCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGCTGCTCCTATTCAAAGTGGGGCTTTCCTAGTCAGTTCTCCAGCA  200

seq1  CAAATTTTGGTTGTCTCTAGAAATATCCTTAATAGACACCCTCAAAGGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTGGTTGTCTCTAGAAATATCCTTAATAGACACCCTCAAAGGCA  250

seq1  TGCTCTAAGTTTGTAGGCTGCTCTGCCTCAGATCGACTTGGCAATCATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTAAGTTTGTAGGCTGCTCTGCCTCAGATCGACTTGGCAATCATGG  300

seq1  GATCCCTTAATCCACTGGCTTCGAGTTAATTACAAACAGATCATCGCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTTAATCCACTGGCTTCGAGTTAATTACAAACAGATCATCGCACT  350

seq1  TATACTATCCCCACCTATTTCAGACCTTGGGAAGAGACTGATTTATAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATCCCCACCTATTTCAGACCTTGGGAAGAGACTGATTTATAATG  400

seq1  AGAGGGGTCTCTCTTGGCAAGCTCAGATGAGCCAACAGGTATGCTGAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGGTCTCTCTTGGCAAGCTCAGATGAGCCAACAGGTATGCTGAGAG  450

seq1  TTGTGGAGTAGATAGTTTGTGGTAAGTGTCTTTGGGTGGCTACCGTAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGGAGTAGATAGTTTGTGGTAAGTGTCTTTGGGTGGCTACCGTAGCT  500

seq1  AACAGTAGTGAATTGCTTTCAGCTAGCACAAGAATGGAAATTTTAGTGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAGTGAATTGCTTTCAGCTAGCACAAGAATGGAAATTTTAGTGAC  550

seq1  TTGAAAGTAGGTAAGAGCATGAACTGCTTTTCCATGAGACCTGGGTTCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAAGTAGGTAAGAGCATGAACTGCTTTTCCATGAGACCTGGGTTCAA  600

seq1  TTGCCATCACCTACATGGTGGCTCGAAACTGTATCTTTAGTATCATGGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCATCACCTACATGGTGGCTCGAAACTGTATCTTTAGTATCATGGGA  650

seq1  TCTCTAATCCTCATCCAGTCTTGTGGGTAACTGCATGCACATGACAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAATCCTCATCCAGTCTTGTGGGTAACTGCATGCACATGACAGACA  700

seq1  TACATGTAAGTAAAACACTCATGCTCATGAAAATAAAAGGGA-TTTTTAA  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TACATGTAAGTAAAACACTCATGCTCATGAAAATAAAAGGGATTTTTTAA  750

seq1  AGGAGAGAACGGGAACCTTAGTTTCATTCATTCAAAGAACTGAAGTCTAC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAACGGGAACCTTAGTTTCATTCATTCAAAGAACTGAAGTCTAC  800

seq1  CAGTCTGCATTAAACTTGAAGAAAAC-TCAGACTCAGAAAAGAACCTGGC  848
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CAGTCTGCATTAAACTTGAAGAAAACTTCAGACTCAGAAAAGAACCTGGC  850

seq1  TTAGTCCA-CCCCTGACTTGATTGCATTGTTATG-AAACCATAAGTAGAT  896
      |||||||| |||||||||||||||||||| | || |||||||||||||||
seq2  TTAGTCCACCCCCTGACTTGATTGCATTGGTTTGAAAACCATAAGTAGAT  900

seq1  GTC-TTAATTGAGTTTCTATTCACAGATTCTCTGA-TTAGATGATTTGAG  944
      ||| |||||||||||||||||||||| |||||||| ||||||||||||||
seq2  GTCTTTAATTGAGTTTCTATTCACAGGTTCTCTGATTTAGATGATTTGAG  950

seq1  GTTG-TTTCAAGTCAATTATTTTGTGG-TCATCCATTAATATCAGGAGGA  992
      |||| |||||||||||||||||||||| |||||||||| ||||| |||||
seq2  GTTGTTTTCAAGTCAATTATTTTGTGGTTCATCCATTATTATCAAGAGGA  1000

seq1  GGTGTTTGTTCTGACTAAGGAATTCACAGAGAG-ATTGGTGGAATAAACC  1041
       |||||||||||||||||| ||||| |||  || ||||||||| ||||||
seq2  -GTGTTTGTTCTGACTAAGAAATTCCCAGTAAGAATTGGTGGATTAAACC  1049

seq1: chr5_126487185_126487275
seq2: B6Ng01-113A16.g_226_280 (reverse)

seq1  TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACTCACTCAC  50
                            |||||||||||||||||          |
seq2  ----------------------TCTCTCTCTCTCTCTCT----------C  18

seq1  TCTCTCTCTCACGCGCACACACACACACACACACACACACA  91
      |||||||||    ||||||||||||||||||||||| ||||
seq2  TCTCTCTCT----CGCACACACACACACACACACACTCACA  55