BAC Information

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BAC

Clone NameB6Ng01-113E04
Chromosome9 (Build37)
Map Location 116,249,741 - 116,400,786
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039567, LOC670467, EG546164, Gadl1, EG668829, Tgfbr2, LOC100043817, LOC100043819, D730003K21Rik
Downstream geneRbms3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113E04.bB6Ng01-113E04.g
ACCDH919100DH919101
length1,1191,048
definitionDH919100|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E04, 5' end.DH919101|Mus musculus domesticus DNA, BAC clone: B6Ng01-113E04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(116,249,741 - 116,250,858)(116,399,726 - 116,400,786)
sequence
gaattcaacccccagcacctctacagtgccttataactctgttaattaca
gtctcaggggatctgaagccttcttttgaccttctcgggcaccagacata
taggcggtacacatacatatatgtaggcagatatgcacacataagataat
gaaacaaatcttaaaaagtcaaaacacaccattaacaaaaacccagacaa
aaaaatcataatcagaagaactgaacaggctgtgagtttcatctctctgc
cttcagcaagacatcctaagggagaaatagaaaggaagacagagtgtgat
aaaattaaataaacatattttgcacttaagtaaaaaacagttttatttca
tagattttctttctacttgctgtgcattgttgggcaggtttcatagttgc
tatggtttccagtttcatattcacagtcaaagggttagagagatgaatca
gtggtaaaagcaaaaagtacctgagtttgctttccagaacttaagttaag
gttggctcttttgagagtaacagggatctgatgccctcttctggtctcta
tgggcactgcactcaattgcatagacacacaggcatgcaaacataattaa
acagaaaatcaagtctttgcacaacacagataaagacagttactcactta
taggctaataagagggttaaattaaagtgatattcatgaagttcctaaaa
atgtcttatacaaagacaaaaatcaacaaaatggaaattatagtttatag
tttaactacttgttcataaaaacgactctaatattttcatgttaacacaa
gtgaaacctctgtgaagagatgtattgagttctgtaaaagctaagaatac
tctgaggacagagatgggattgtgggcagtgtttggtatcctggcttaga
gttccccctattgaactctttggtgaacgcttctttattatttttgatgg
agttgagaatctggatatacagtccagagagatgactcagtggttaaagt
gtataggtgtgtcatagccccacccaccccatcaggtagctcacactgtc
tgcagcttcgagctccaggggtattctctttgctttcttcaggggcatga
ttgcattgcatagaaacac
gaattccacagtttaatccatatactctatggtattctgtcatggaagcc
ctaagcaactaacagaaggaaatagaaagaactaattttaaactaataat
agcgaagtctctctgatgtcaacaactggttcttggatacagataatatc
tggctcctgcttctctttcatgacatgtggtggtgtttggagacactcag
aaactcagtgtctgtgtttttgagtctgggcatgtgagcatggtgcctcc
cagtggctagaagagggtgttggaagttagagctataatctgttttaact
agggtttctactgctatgcaaaataccatgaccaaaagcaacttggggag
gaaagggtttatttcatcttagagccgtagttcattttccaaggaagtca
gggcaggaactggggtaggaatatggagtcaggaaccaaagcataaccat
ggaggagtgttgctttctgcattcctccctctgacttgttctttcttata
gcaagaggcccaacaggccactcctgtgggattggctccctcacattgac
aattaactaagacaatacctcacacacttgcctataggtaggccagtctt
ataaaggcattttcttacttgtgattctccctgctcaaataattctagct
gtgtcaagttaacataaaaccatccacacacagacatttgtgagctgccc
agcatgggttctggaaactaaactctggtcctctagtagaacagtacatg
ttcttaagcccagagccatttctccatcccctgaatgaaattttttgtga
ggtatccattatattcttcaaggcaattatgagttaaagtagcacaaagc
taataaaagctaattagtgaaagagattaatagaaggaaatgaattaaaa
tggtacaggaggaaacttccatttagtgatgagagacaaaatgatagcta
gtaaacaaataatattatacaaattggagactaatagaaaattagtgcca
ggtcataaatattatatgacattatgtaatatatcaacattccaatcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_116249741_116250858
seq2: B6Ng01-113E04.b_48_1166

seq1  GAATTCAACCCCCAGCACCTCTACAGTGCCTTATAACTCTGTTAATTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCCCCAGCACCTCTACAGTGCCTTATAACTCTGTTAATTACA  50

seq1  GTCTCAGGGGATCTGAAGCCTTCTTTTGACCTTCTCGGGCACCAGACATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAGGGGATCTGAAGCCTTCTTTTGACCTTCTCGGGCACCAGACATA  100

seq1  TAGGCGGTACACATACATATATGTAGGCAGATATGCACACATAAGATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCGGTACACATACATATATGTAGGCAGATATGCACACATAAGATAAT  150

seq1  GAAACAAATCTTAAAAAGTCAAAACACACCATTAACAAAAACCCAGACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACAAATCTTAAAAAGTCAAAACACACCATTAACAAAAACCCAGACAA  200

seq1  AAAAATCATAATCAGAAGAACTGAACAGGCTGTGAGTTTCATCTCTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCATAATCAGAAGAACTGAACAGGCTGTGAGTTTCATCTCTCTGC  250

seq1  CTTCAGCAAGACATCCTAAGGGAGAAATAGAAAGGAAGACAGAGTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAGCAAGACATCCTAAGGGAGAAATAGAAAGGAAGACAGAGTGTGAT  300

seq1  AAAATTAAATAAACATATTTTGCACTTAAGTAAAAAACAGTTTTATTTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTAAATAAACATATTTTGCACTTAAGTAAAAAACAGTTTTATTTCA  350

seq1  TAGATTTTCTTTCTACTTGCTGTGCATTGTTGGGCAGGTTTCATAGTTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATTTTCTTTCTACTTGCTGTGCATTGTTGGGCAGGTTTCATAGTTGC  400

seq1  TATGGTTTCCAGTTTCATATTCACAGTCAAAGGGTTAGAGAGATGAATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTTCCAGTTTCATATTCACAGTCAAAGGGTTAGAGAGATGAATCA  450

seq1  GTGGTAAAAGCAAAAAGTACCTGAGTTTGCTTTCCAGAACTTAAGTTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTAAAAGCAAAAAGTACCTGAGTTTGCTTTCCAGAACTTAAGTTAAG  500

seq1  GTTGGCTCTTTTGAGAGTAACAGGGATCTGATGCCCTCTTCTGGTCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTCTTTTGAGAGTAACAGGGATCTGATGCCCTCTTCTGGTCTCTA  550

seq1  TGGGCACTGCACTCAATTGCATAGACACACAGGCATGCAAACATAATTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCACTGCACTCAATTGCATAGACACACAGGCATGCAAACATAATTAA  600

seq1  ACAGAAAATCAAGTCTTTGCACAACACAGATAAAGACAGTTACTCACTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAATCAAGTCTTTGCACAACACAGATAAAGACAGTTACTCACTTA  650

seq1  TAGGCTAATAAGAGGGTTAAATTAAAGTGATATTCATGAAGTTCCTAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTAATAAGAGGGTTAAATTAAAGTGATATTCATGAAGTTCCTAAAA  700

seq1  ATGTCTTATACAAAGACAAAAATCAACAAAATGGAAATTATAGTTTATAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTTATACAAAGACAAAAATCAACAAAATGGAAATTATAGTTTATAG  750

seq1  TTTAACTACTTGTTCATAAAAACGACTCTAATATTTTCATGTTAACACAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACTACTTGTTCATAAAAACGACTCTAATATTTTCATGTTAACACAA  800

seq1  GTGAAACCTCTGTGAAGAGATGTATTGAGTTCTGT-AAAGCTAAGAATAC  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  GTGAAACCTCTGTGAAGAGATGTATTGAGTTCTGTAAAAGCTAAGAATAC  850

seq1  TCTGAGGACAGAGATGGGATTGTGGGCAGTGTTTGGTATCCTGGCTTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGACAGAGATGGGATTGTGGGCAGTGTTTGGTATCCTGGCTTAGA  900

seq1  GTTCCCCCTA-TGAACTCTTTGGTGAACGCTTCTTTATTATTTTTGATGG  948
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCCCTATTGAACTCTTTGGTGAACGCTTCTTTATTATTTTTGATGG  950

seq1  AGTTGAGAATCTGGAATATACAGTCCAGAGAGATGACTCAGTGGTTAAAA  998
      |||||||||||||| ||||||||||||||||||||||||||||||| |||
seq2  AGTTGAGAATCTGG-ATATACAGTCCAGAGAGATGACTCAGTGGTT-AAA  998

seq1  GTGTATAGTGTGT-TCATAGCCACACCCACCCCATCAGGTAGCTCACAAC  1047
      |||||||| |||| |||||||| |||||||||||||||||||||||| ||
seq2  GTGTATAG-GTGTGTCATAGCCCCACCCACCCCATCAGGTAGCTCAC-AC  1046

seq1  TGTCTGCAGCTTC-AGCTCCAGGGGTA-TCTCTTTTGCTTCTACAGGGGC  1095
      ||||||||||||| ||||||||||||| |||||||   |||| |||||||
seq2  TGTCTGCAGCTTCGAGCTCCAGGGGTATTCTCTTTGCTTTCTTCAGGGGC  1096

seq1  ATGAATGCATTGCATAGAAACAC  1118
      |||| ||||||||||||||||||
seq2  ATGATTGCATTGCATAGAAACAC  1119

seq1: chr9_116399726_116400786
seq2: B6Ng01-113E04.g_69_1116 (reverse)

seq1  GGATTGGAATGTTGAATATATTTACATTAATGTCCATATTAATATTTATG  50
      |||||||||||||| ||||| ||||| |||||| |||| |||||||||||
seq2  GGATTGGAATGTTG-ATATA-TTACA-TAATGT-CATA-TAATATTTATG  45

seq1  -CCTGGCACTTATTTTCTATTTAGTCTCCAATTTGTTATAATTATTATTT  99
       ||||||||| |||||||| ||||||||||||||| ||||| ||||||||
seq2  ACCTGGCACTAATTTTCTA-TTAGTCTCCAATTTG-TATAA-TATTATTT  92

seq1  TGTTTTACTAGCTATTCATTTTTGTCTTCTCATCACTTAAATGGATGTTT  149
         ||||||||||| ||| ||||||| ||||||||| |||||||| ||||
seq2  --GTTTACTAGCTA-TCA-TTTTGTC-TCTCATCAC-TAAATGGAAGTTT  136

seq1  CCTCCTGTACCATTTTAATTTCATTTCCTTCTATTAATTCTCTTTCACTA  199
      |||||||||||||||||| |||||||||||||||||| ||||||||||||
seq2  CCTCCTGTACCATTTTAA-TTCATTTCCTTCTATTAA-TCTCTTTCACTA  184

seq1  ATTAGCTTTTATTAGCTTTGTGCTACTTT-ACTCATAATTGCCTTGAAGA  248
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  ATTAGCTTTTATTAGCTTTGTGCTACTTTAACTCATAATTGCCTTGAAGA  234

seq1  TTATAATGGATACCTCAC-AAAAATTTCATTCAGGGGATGGAGAAATGGC  297
       ||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  ATATAATGGATACCTCACAAAAAATTTCATTCAGGGGATGGAGAAATGGC  284

seq1  TCTGGGCTTAAGAACATGTACTGTTCTACTAGAGGACCAGAGTTTAGTTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGCTTAAGAACATGTACTGTTCTACTAGAGGACCAGAGTTTAGTTT  334

seq1  CCAGAACCCATGCTGGGCAGCTCACAAATGTCTGTGTGTGGATGGTTTTA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAACCCATGCTGGGCAGCTCACAAATGTCTGTGTGTGGATGGTTTTA  384

seq1  TGTTAACTTGACACAGCTAGAATTATTTGAGCAGGGAGAATCACAAGTAA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAACTTGACACAGCTAGAATTATTTGAGCAGGGAGAATCACAAGTAA  434

seq1  GAAAATGCCTTTATAAGACTGGCCTACCTATAGGCAAGTGTGTGAGGTAT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGCCTTTATAAGACTGGCCTACCTATAGGCAAGTGTGTGAGGTAT  484

seq1  TGTCTTAGTTAATTGTCAATGTGAGGGAGCCAATCCCACAGGAGTGGCCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTAGTTAATTGTCAATGTGAGGGAGCCAATCCCACAGGAGTGGCCT  534

seq1  GTTGGGCCTCTTGCTATAAGAAAGAACAAGTCAGAGGGAGGAATGCAGAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGCCTCTTGCTATAAGAAAGAACAAGTCAGAGGGAGGAATGCAGAA  584

seq1  AGCAACACTCCTCCATGGTTATGCTTTGGTTCCTGACTCCATATTCCTAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACACTCCTCCATGGTTATGCTTTGGTTCCTGACTCCATATTCCTAC  634

seq1  CCCAGTTCCTGCCCTGACTTCCTTGGAAAATGAACTACGGCTCTAAGATG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTCCTGCCCTGACTTCCTTGGAAAATGAACTACGGCTCTAAGATG  684

seq1  AAATAAACCCTTTCCTCCCCAAGTTGCTTTTGGTCATGGTATTTTGCATA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAACCCTTTCCTCCCCAAGTTGCTTTTGGTCATGGTATTTTGCATA  734

seq1  GCAGTAGAAACCCTAGTTAAAACAGATTATAGCTCTAACTTCCAACACCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTAGAAACCCTAGTTAAAACAGATTATAGCTCTAACTTCCAACACCC  784

seq1  TCTTCTAGCCACTGGGAGGCACCATGCTCACATGCCCAGACTCAAAAACA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGCCACTGGGAGGCACCATGCTCACATGCCCAGACTCAAAAACA  834

seq1  CAGACACTGAGTTTCTGAGTGTCTCCAAACACCACCACATGTCATGAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACTGAGTTTCTGAGTGTCTCCAAACACCACCACATGTCATGAAAG  884

seq1  AGAAGCAGGAGCCAGATATTATCTGTATCCAAGAACCAGTTGTTGACATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCAGGAGCCAGATATTATCTGTATCCAAGAACCAGTTGTTGACATC  934

seq1  AGAGAGACTTCGCTATTATTAGTTTAAAATTAGTTCTTTCTATTTCCTTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACTTCGCTATTATTAGTTTAAAATTAGTTCTTTCTATTTCCTTC  984

seq1  TGTTAGTTGCTTAGGGCTTCCATGACAGAATACCATAGAGTATATGGATT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGTTGCTTAGGGCTTCCATGACAGAATACCATAGAGTATATGGATT  1034

seq1  AAACTGTGGAATTC  1061
      ||||||||||||||
seq2  AAACTGTGGAATTC  1048