BAC Information

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BAC

Clone NameB6Ng01-113K17
Chromosome9 (Build37)
Map Location 17,428,181 - 17,547,501
singlet/doubletdoublet
Overlap geneLOC244710
Upstream geneEG434373, LOC100040074, LOC100040090
Downstream geneLOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113K17.bB6Ng01-113K17.g
ACCDH919404DH919405
length9281,004
definitionDH919404|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K17, 5' end.DH919405|Mus musculus domesticus DNA, BAC clone: B6Ng01-113K17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(17,546,569 - 17,547,501)(17,428,181 - 17,429,180)
sequence
gaattcaagtcagaatattggatagacaactgatgccaaataaaaaaagc
acggaagtgttaagtagagagctggagatctgttgcaagtcagtttccag
tgactggctggttaactcaaggacatcaagtctgaaaagtaggaggacaa
tgagtaggtttattttgacaaagttgttgcaaagtgggggtgggggaagt
cttccagagacccatcaagcatggtatttgattcatccctaattactagg
agatttgcagaattcacttgcagcctaatccttcaccctttcatggaaga
aacttgagtttctagtgggtcttttctggatgccctgggtatcctttttc
gctcccctgtaactctgtgaacctctgtttcttggtgacttgtctgattt
gtcagccctcttgtaagaccttgttttaggtcctttgattctcacttgca
tctacaatcacttaggtttttttaatatcagcttctggtatgtgacagat
ggctcacttcagatgttaccaccaccttggagcatggaggtggtgaagac
ttaagtgtctctgtgtgagctaaatgcccactcagcagcctgttcattct
aggtagtggctgctatacctgacccaattttttttcctttccttatcatt
aaaattagattaacaactgccacatgtactggaaggctgacacaagaatt
ggagggatgatttatttctttacctgatttaaaatctacttacttgatcg
ctgcttcagagcaacaatcgaaaatctgttaatttttatgagtagtatgt
tggaatccattgccaatgtctagcagtagtcttttgtgaaagttgcatat
ttttcactataatacctaatctttctgttaattttcatggaatgtgcatt
acatcttgtcaatggatattagaaatat
gaattcaattcttatggatctcttgcactggcaagcttttgctgggtctg
taaagatgggtgatgagcctttgtgattgtgcagacctccattgtcctga
gtcagcctacttgttcctatgaaaatggactggacaaagacaagttggaa
gactgatggaaaaaaatatttcttgagcagaacaatgacctgcagacacc
ttgtcaagaaaagaaaaaaagaaaaagattacttgttatatactacttaa
atattggctagctcagaagtaggctagatttaagaatgtagagtggaaaa
tttgaccatatttacatacatttcattcagtttatgccttatattttctc
tatttacataatcatagaattaattatgaagggattttcacaaaaagcaa
taatgaaaagaatatgttttccaatgattataatttaaatatattaaatt
cttacaacatggttattgagaactatttgaaatgctgtactcactaaata
cattctttaaatactgagagtcccttcatcccatttttttaaattttgta
ttaactccttgtaagactctaaggaataaataggctgctctgaaagttca
ggcacacagtcaagaacttcagtgtggacacataagcatgtgcctgaagt
gagtcctccaagctcttcattgtaaataaatgatatccacctcaaggtaa
ggtctgaactgaagggaaaacctagtgtttcttagtctttggcaatgaga
aatattatcagtacatcttcagaattctgtcattaaatattgctagaaac
aaatcatctctctctctctctctctctctctctctctctctctctctttc
tttcttttgagataaaataatttattgcaaagaacaggtggtcaagagtg
ttgagtgaagagaaaagtattatattactttttagaaaatatagttttag
aaacaactacatgcttaataaattttaacaagacacccaaatttggtctc
tatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17546569_17547501
seq2: B6Ng01-113K17.b_48_975 (reverse)

seq1  ATATTTCTGATATCATTTAACAAGAATGTAATGCCACATTCCATGAAAAA  50
      |||||||| |||||  || ||||| |||||||| ||||||||||| ||||
seq2  ATATTTCTAATATCCATTGACAAG-ATGTAATG-CACATTCCATG-AAAA  47

seq1  CTAACATGAAAGATTAGGTAATTATAGTGAAAAATATGCAACTTTCACAA  100
       ||||| |||||||||||| ||||||||||||||||||||||||||||||
seq2  TTAACA-GAAAGATTAGGT-ATTATAGTGAAAAATATGCAACTTTCACAA  95

seq1  AAGACTACTGCTAGACATTTGCCATGGATTCCAACATACTACTCATAAAA  150
      ||||||||||||||||||| || |||||||||||||||||||||||||||
seq2  AAGACTACTGCTAGACATTGGCAATGGATTCCAACATACTACTCATAAAA  145

seq1  ATTAAACAGATTTTCGATTTGTTGCTCTGAAGCAGCGATCAAGTAAGTAG  200
      ||| ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATT-AACAGATTTTCGA-TTGTTGCTCTGAAGCAGCGATCAAGTAAGTAG  193

seq1  ATTTTAAATCAGGTAAAGAAATAAATCATCCCTCCAATTCTTGTGTCAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAAATCAGGTAAAGAAATAAATCATCCCTCCAATTCTTGTGTCAGC  243

seq1  CTTCCAGTACATGTGGCAGTTGTTAATCTAA-TTTAATGATAAGG-AAGG  298
      ||||||||||||||||||||||||||||||| ||||||||||||| ||||
seq2  CTTCCAGTACATGTGGCAGTTGTTAATCTAATTTTAATGATAAGGAAAGG  293

seq1  AAAAAAAATTGGGTCAGGTATAGCAGCCACTACCTAGAATGAACAGGCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAATTGGGTCAGGTATAGCAGCCACTACCTAGAATGAACAGGCTG  343

seq1  CTGAGTGGGCATTTAGCTCACACAGAGACACTTAAGTCTTCACCACCTCC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTGGGCATTTAGCTCACACAGAGACACTTAAGTCTTCACCACCTCC  393

seq1  ATGCTCCAAGGTGGTGGTAACATCTGAAGTGAGCCATCTGTCACATACCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCAAGGTGGTGGTAACATCTGAAGTGAGCCATCTGTCACATACCA  443

seq1  GAAGCTGATATTAAAAAAACCTAAGTGATTGTAGATGCAAGTGAGAATCA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGATATTAAAAAAACCTAAGTGATTGTAGATGCAAGTGAGAATCA  493

seq1  AAGGACCTAAAACAAGGTCTTACAAGAGGGCTGACAAATCAGACAAGTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGACCTAAAACAAGGTCTTACAAGAGGGCTGACAAATCAGACAAGTCA  543

seq1  CCAAGAAACAGAGGTTCACAGAGTTACAGGGGAGCGAAAAAGGATACCCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAAACAGAGGTTCACAGAGTTACAGGGGAGCGAAAAAGGATACCCA  593

seq1  GGGCATCCAGAAAAGACCCACTAGAAACTCAAGTTTCTTCCATGAAAGGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCCAGAAAAGACCCACTAGAAACTCAAGTTTCTTCCATGAAAGGG  643

seq1  TGAAGGATTAGGCTGCAAGTGAATTCTGCAAATCTCCTAGTAATTAGGGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGATTAGGCTGCAAGTGAATTCTGCAAATCTCCTAGTAATTAGGGA  693

seq1  TGAATCAAATACCATGCTTGATGGGTCTCTGGAAGACTTCCCCCACCCCC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATCAAATACCATGCTTGATGGGTCTCTGGAAGACTTCCCCCACCCCC  743

seq1  ACTTTGCAACAACTTTGTCAAAATAAACCTACTCATTGTCCTCCTACTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGCAACAACTTTGTCAAAATAAACCTACTCATTGTCCTCCTACTTT  793

seq1  TCAGACTTGATGTCCTTGAGTTAACCAGCCAGTCACTGGAAACTGACTTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTTGATGTCCTTGAGTTAACCAGCCAGTCACTGGAAACTGACTTG  843

seq1  CAACAGATCTCCAGCTCTCTACTTAACACTTCCGTGCTTTTTTTATTTGG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGATCTCCAGCTCTCTACTTAACACTTCCGTGCTTTTTTTATTTGG  893

seq1  CATCAGTTGTCTATCCAATATTCTGACTTGAATTC  933
      |||||||||||||||||||||||||||||||||||
seq2  CATCAGTTGTCTATCCAATATTCTGACTTGAATTC  928

seq1: chr9_17428181_17429180
seq2: B6Ng01-113K17.g_70_1073

seq1  GAATTCAATTCTTATGGATCTCTTGCACTGGCAAGCTTTTGCTGGGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATTCTTATGGATCTCTTGCACTGGCAAGCTTTTGCTGGGTCTG  50

seq1  TAAAGATGGGTGATGAGCCTTTGTGATTGTGCAGACCTCCATTGTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGATGGGTGATGAGCCTTTGTGATTGTGCAGACCTCCATTGTCCTGA  100

seq1  GTCAGCCTACTTGTTCCTATGAAAATGGACTGGACAAAGACAAGTTGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCCTACTTGTTCCTATGAAAATGGACTGGACAAAGACAAGTTGGAA  150

seq1  GACTGATGGAAAAAAATATTTCTTGAGCAGAACAATGACCTGCAGACACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGATGGAAAAAAATATTTCTTGAGCAGAACAATGACCTGCAGACACC  200

seq1  TTGTCAAGAAAAGAAAAAAAGAAAAAGATTACTTGTTATATACTACTTAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAAGAAAAGAAAAAAAGAAAAAGATTACTTGTTATATACTACTTAA  250

seq1  ATATTGGCTAGCTCAGAAGTAGGCTAGATTTAAGAATGTAGAGTGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGCTAGCTCAGAAGTAGGCTAGATTTAAGAATGTAGAGTGGAAAA  300

seq1  TTTGACCATATTTACATACATTTCATTCAGTTTATGCCTTATATTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCATATTTACATACATTTCATTCAGTTTATGCCTTATATTTTCTC  350

seq1  TATTTACATAATCATAGAATTAATTATGAAGGGATTTTCACAAAAAGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTACATAATCATAGAATTAATTATGAAGGGATTTTCACAAAAAGCAA  400

seq1  TAATGAAAAGAATATGTTTTCCAATGATTATAATTTAAATATATTAAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAAGAATATGTTTTCCAATGATTATAATTTAAATATATTAAATT  450

seq1  CTTACAACATGGTTATTGAGAACTATTTGAAATGCTGTACTCACTAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACAACATGGTTATTGAGAACTATTTGAAATGCTGTACTCACTAAATA  500

seq1  CATTCTTTAAATACTGAGAGTCCCTTCATCCCATTTTTTTAAATTTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTTAAATACTGAGAGTCCCTTCATCCCATTTTTTTAAATTTTGTA  550

seq1  TTAACTCCTTGTAAGACTCTAAGGAATAAATAGGCTGCTCTGAAAGTTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACTCCTTGTAAGACTCTAAGGAATAAATAGGCTGCTCTGAAAGTTCA  600

seq1  GGCACACAGTCAAGAACTTCAGTGTGGACACATAAGCATGTGCCTGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACACAGTCAAGAACTTCAGTGTGGACACATAAGCATGTGCCTGAAGT  650

seq1  GAGTCCTCCAAGCTCTTCATTGTAAATAAATGATATCCACCTCAAGGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTCCAAGCTCTTCATTGTAAATAAATGATATCCACCTCAAGGTAA  700

seq1  GGTCTGAACTGAAGGGAAAACCTAGTG-TTCTTAGTC-TTGGCAATGAGA  748
      ||||||||||||||||||||||||||| ||||||||| ||||||||||||
seq2  GGTCTGAACTGAAGGGAAAACCTAGTGTTTCTTAGTCTTTGGCAATGAGA  750

seq1  AATATTATCAGTACATCTTCAGAATTCTGTCATTAAATATTGCTAGAAAC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATCAGTACATCTTCAGAATTCTGTCATTAAATATTGCTAGAAAC  800

seq1  AAATCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTC  850

seq1  TTTCTTTTTGAGATAAAATAATTTATTGCAAAGAACAGGTGGTCAAGAGT  898
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTC-TTTTGAGATAAAATAATTTATTGCAAAGAACAGGTGGTCAAGAGT  899

seq1  G-TGAGTGAAGAGAAAAGTATTATATTAC-TTTTAGAAAATATAGTTTTA  946
      | ||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GTTGAGTGAAGAGAAAAGTATTATATTACTTTTTAGAAAATATAGTTTTA  949

seq1  GAAACAACTACATGCTTAATAAATTTTAACAAGACA-CCAAATTTTGTCT  995
      |||||||||||||||||||||||||||||||||||| |||||||| ||||
seq2  GAAACAACTACATGCTTAATAAATTTTAACAAGACACCCAAATTTGGTCT  999

seq1  CTATT  1000
      |||||
seq2  CTATT  1004