BAC Information

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BAC

Clone NameB6Ng01-113N03
Chromosome9 (Build37)
Map Location 104,578,196 - 104,696,530
singlet/doubletdoublet
Overlap geneCpne4
Upstream geneTmem108, EG384978, Nphp3, Ube1dc1, Acad11, Ccrl1, Hmgb1-rs16, Acpp, LOC100040921
Downstream geneMrpl3, Nudt16, 1700080E11Rik, Nek11, Aste1, Atp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-113N03.bB6Ng01-113N03.g
ACCDH919514DH919515
length939498
definitionDH919514|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N03, 5' end.DH919515|Mus musculus domesticus DNA, BAC clone: B6Ng01-113N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,695,591 - 104,696,530)(104,578,196 - 104,578,699)
sequence
gaattcacccacacattttgtcagagtgcattctgtcctgtcccactgag
cctgtcctttaggcaagagttgtccacaaagttgtgctttgtgctaaaaa
aaacgagcctacattccctagtttttagttttaattttgtttataacatc
gtgtcattctttctcagtctctgaatcttagaatgaaatcaactggaacc
atcctcagcaatgaactccctcttgcccatgactcagttctcaagactgg
tcctctatcatcagttaggtttacacagccaccttttcttttctaaacct
gtgagcacaacaagctcagtcggtataatgctacttgtatgtatgcttca
gggctgaccgctgggtatcgtataactgattggggtgctcttccctgggg
aagactagctcttttccgctcagcattccttagtttaatccttttttcaa
tgccatcccagctctcttcctgtggtacagtcagtagaaggcagggcaca
gtgatcctccaaggttggcatatgcaggtgacctaggcttagtaagaagc
ggctggtgctggcagctaaggtttctgcttcttctctaccatcaaagtat
aaagactagaaatggataaggctctagactctgagaacctttcactttca
atctgagtcaatccagggactgcctcttactggtccatgtataaacttat
taattaataagaaattaattaatatgaaagatgtcctggagcttgtgatc
cctgtgtaaccactaggatggttccttcagctcttataacacccaacaat
ttcaggtctatttggcgatctctatccccattgcacagcaagctgtttta
gctccttgcaaaggcctagcacaaagtggttgcttgaagataataggagg
atggatatatgacagaaatgggttggttgtggaattgga
aaagagcatgagagatggagctggggatgtggctttgtgggtaagagcac
tttctttccaagatctaggaccagaggacctgagttcaaattcccaaccc
tcagcattggggccagagacaggcagatcccaacagttcactgggcagca
agtatagctagccctgtaagcttctggatcagggggagaccctgtcttaa
ggcagtcacatagagagcaacaaggcgagactattgatctctttctctgg
tctccacatgcatgcacacaggcacacagccatgcatttatatgagtacc
catacacctagaccaccataaaaacatactgcgcacacaaagtagaggag
aaggaaaaaagtcgataaaggagtttgactactagaagaaatgaataaca
ataatatatacaaatacattcaataaataatatacatgtttatatgcaca
ttatatatatgtatgtgtgtgtgaaaggtatatatgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_104695591_104696530
seq2: B6Ng01-113N03.b_48_986 (reverse)

seq1  TCCAATTCCACAACCAACCCATTTTCTGTCATATATCCATCCTCCTAATA  50
      ||||||||||||||||||||| ||||||||||||||||||||||||| ||
seq2  TCCAATTCCACAACCAACCCA-TTTCTGTCATATATCCATCCTCCTATTA  49

seq1  TCTTCAAGCAACCACTTTGTGCTAGGCCTTTGCAAGGAGCTAAAACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAAGCAACCACTTTGTGCTAGGCCTTTGCAAGGAGCTAAAACAGCT  99

seq1  TGCTGTGCAATGGGGATAGAGATCGCCAAATAGACCTGAAATTGTTGGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTGCAATGGGGATAGAGATCGCCAAATAGACCTGAAATTGTTGGGT  149

seq1  GTTATAAGAGCTGAAGGAACCATCCTAGTGGTTACACAGGGATCACAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAAGAGCTGAAGGAACCATCCTAGTGGTTACACAGGGATCACAAGC  199

seq1  TCCAGGACATCTTTCATATTAATTAATTTCTTATTAATTAATAAGTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGACATCTTTCATATTAATTAATTTCTTATTAATTAATAAGTTTAT  249

seq1  ACATGGACCAGTAAGAGGCAGTCCCTGGATTGACTCAGATTGAAAGTGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGACCAGTAAGAGGCAGTCCCTGGATTGACTCAGATTGAAAGTGAA  299

seq1  AGGTTCTCAGAGTCTAGAGCCTTATCCATTTCTAGTCTTTATACTTTGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTCTCAGAGTCTAGAGCCTTATCCATTTCTAGTCTTTATACTTTGAT  349

seq1  GGTAGAGAAGAAGCAGAAACCTTAGCTGCCAGCACCAGCCGCTTCTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGAGAAGAAGCAGAAACCTTAGCTGCCAGCACCAGCCGCTTCTTACT  399

seq1  AAGCCTAGGTCACCTGCATATGCCAACCTTGGAGGATCACTGTGCCCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTAGGTCACCTGCATATGCCAACCTTGGAGGATCACTGTGCCCTGC  449

seq1  CTTCTACTGACTGTACCACAGGAAGAGAGCTGGGATGGCATTGAAAAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTACTGACTGTACCACAGGAAGAGAGCTGGGATGGCATTGAAAAAAG  499

seq1  GATTAAACTAAGGAATGCTGAGCGGAAAAGAGCTAGTCTTCCCCAGGGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAACTAAGGAATGCTGAGCGGAAAAGAGCTAGTCTTCCCCAGGGAA  549

seq1  GAGCACCCCAATCAGTTATACGATACCCAGCGGTCAGCCCTGAAGCATAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACCCCAATCAGTTATACGATACCCAGCGGTCAGCCCTGAAGCATAC  599

seq1  ATACAAGTAGCATTATACCGACTGAGCTTGTTGTGCTCACAGGTTTAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAGTAGCATTATACCGACTGAGCTTGTTGTGCTCACAGGTTTAGAA  649

seq1  AAGAAAAGGTGGCTGTGTAAACCTAACTGATGATAGAGGACCAGTCTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGGTGGCTGTGTAAACCTAACTGATGATAGAGGACCAGTCTTGA  699

seq1  GAACTGAGTCATGGGCAAGAGGGAGTTCATTGCTGAGGATGGTTCCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGAGTCATGGGCAAGAGGGAGTTCATTGCTGAGGATGGTTCCAGTT  749

seq1  GATTTCATTCTAAGATTCAGAGACTGAGAAAGAATGACACGATGTTATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCATTCTAAGATTCAGAGACTGAGAAAGAATGACACGATGTTATAA  799

seq1  ACAAAATTAAAACTAAAAACTAGGGAATGTAGGCTCGTTTTTTTTAGCAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATTAAAACTAAAAACTAGGGAATGTAGGCTCGTTTTTTTTAGCAC  849

seq1  AAAGCACAACTTTGTGGACAACTCTTGCCTAAAGGACAGGCTCAGTGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCACAACTTTGTGGACAACTCTTGCCTAAAGGACAGGCTCAGTGGGA  899

seq1  CAGGACAGAATGCACTCTGACAAAATGTGTGGGTGAATTC  940
      ||||||||||||||||||||||||||||||||||||||||
seq2  CAGGACAGAATGCACTCTGACAAAATGTGTGGGTGAATTC  939

seq1: chr9_104578196_104578699
seq2: B6Ng01-113N03.g_68_571

seq1  GAATTCAAAGAGCATGAGAGATGGAGCTGGGGATGTGGCTTTGTGGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAGCATGAGAGATGGAGCTGGGGATGTGGCTTTGTGGGTAA  50

seq1  GAGCACTTTCTTTCCAAGATCTAGGACCAGAGGACCTGAGTTCAAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACTTTCTTTCCAAGATCTAGGACCAGAGGACCTGAGTTCAAATTCC  100

seq1  CAACCCTCAGCATTGGGGCCAGAGACAGGCAGATCCCAACAGTTCACTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCTCAGCATTGGGGCCAGAGACAGGCAGATCCCAACAGTTCACTGG  150

seq1  GCAGCAAGTATAGCTAGCCCTGTAAGCTTCTGGATCAGGGGGAGACCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAAGTATAGCTAGCCCTGTAAGCTTCTGGATCAGGGGGAGACCCTG  200

seq1  TCTTAAGGCAGTCACATAGAGAGCAACAAGGCGAGACTATTGATCTCTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAGGCAGTCACATAGAGAGCAACAAGGCGAGACTATTGATCTCTTT  250

seq1  CTCTGGTCTCCACATGCATGCACACAGGCACACAGCCATGCATTTATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTCTCCACATGCATGCACACAGGCACACAGCCATGCATTTATATG  300

seq1  AGTACCCATACACCTAGACCACCATAAAAACATACTGCGCACACAAAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCCATACACCTAGACCACCATAAAAACATACTGCGCACACAAAGTA  350

seq1  GAGGAGAAGGAAAAAAGTCGATAAAGGAGTTTGACTACTAGAAGAAATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGAAGGAAAAAAGTCGATAAAGGAGTTTGACTACTAGAAGAAATGA  400

seq1  ATAACAATAATATATACAAATACATTCAATAAATAATATACATGTTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAATAATATATACAAATACATTCAATAAATAATATACATGTTTATA  450

seq1  TGCACATTATATATATGTATGTGTGTGTGAAAGGTATATATGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACATTATATATATGTATGTGTGTGTGAAAGGTATATATGTGTGTGTG  500

seq1  TGTG  504
      ||||
seq2  TGTG  504