BAC Information

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BAC

Clone NameB6Ng01-114N03
Chromosome9 (Build37)
Map Location 49,471,719 - 49,472,769
singlet/doubletsinglet
Overlap geneNcam1
Upstream geneZbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12
Downstream geneEG667975, LOC100042806, LOC100043346, LOC672372, 1600029D21Rik, Pts, Bcdo2, Tex12, Il18, Sdhd, Timm8b, AU019823, Pih1d2, Dlat, Dixdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114N03.bB6Ng01-114N03.g
ACCDH920244DH920245
length1,1681,054
definitionDH920244|Mus musculus domesticus DNA, BAC clone: B6Ng01-114N03, 5' end.DH920245|Mus musculus domesticus DNA, BAC clone: B6Ng01-114N03, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagaaggcaattccatactatgtccttttatcaagtaatactagt
ggtagaattttgtcctcatcaaccatgcatttttggccaggtttacagta
tcaggcatgagagtccacctttgagttgaccttaaatctaattatagagc
acctattacactaaggggcatgtcttgccatattggtcatcattgcagct
tgtagggttcgcagttacagaagactactaactaactcctgcccaaactc
cagcagcccatatagtaccttctattactagcaaagctagtcaccaggga
ggaagcttccactgtaactaccaatttgatgtctgtaaatcttgttatga
aagtatgtagtgccttcgtcgatagggtcttactaaaaagttttgatagt
caatcaagaacaagagcaatagagtgtattgttctgagggtctctgggga
ctctctggcccacaattcaaatggaggtatcacacacctggagctgggat
ttttgtttaataagctatggattctggtaggagtattatcagtctcatgt
agggtgcctctgttcacactatttttgttatattttaatgagcttgtgaa
atagcaggttcccacacagttttttcacacctccttattgttatgcatta
tctcagtctctcctccactctccctcatccccctcactatttaacccccc
tccattattcccctacccctttcataccacctgggacttacttctattgt
tttaaaagaatatggcattaaaattattattttagacagacatggtggct
cagtctgtaatcctatctcttgggaactggagcaggaagatgaggtcata
gggaattagaggccagcctgagctacatattcctacaaacaaggcctcag
cccaccgctgtactaagcccagtaaactccactggctcactaagccagac
ttagaggggttcattttgttggcttgtcaacagtgtcctgactgtggctt
tgggattctcagatgcatcgctgaaatacaccaagtgtttctgattcaga
gtttccccacagaacgagcttatgagtttcatcatatttcctgaagaaaa
aaaaaagctcagcctgctttaaagataagcaattaaagccaaacgatgcc
atgtaattggctctagtg
gaattccaacgcattaaaatgtatgatttaaaagtaactgcagagccctt
cctaaacctctcagcatggcaatgggagatcctgcagtggacagcaaatg
cagggagattgaaaaggacagatgtggctgatttggtcacatttcctgct
caccatctagatcctgaccaagtcctctcaaaggaaaaacaatccatgaa
tgagacttcacatgcatcatgattaaaagacaaacaaacaaaaaaacaaa
aacaaagaaaataccacaaaccccagagctgtctcacactaaaggatcgg
gacttaagtttaatttagctaatgaggctttggagagtcagttatcctcc
caaggctgctgacgccagcaggacagcagaagaaactccatatttcagca
ggagtcccaccctaccaggcgccacacagaatgggacaaacctgtagatc
caacttagaacattcctgggagcccggtcatgggtataaccgccaagcag
acatgaatcagaatagcccaagaggcgcccacaggatcttccaggtctat
tttaggtaatgatcggagccaacagaaagttatatagaattctagagaga
aacatagtcagcaaagccagatgcacaatgatgcgttcctagggtgtaag
acaaccaaccacgtctccttaagttgtccactgtaccctgccatattcat
agcaccaggccaacatcagtaacttacagacccaccctttagccttacct
acaaagaaaccagagacttagccccttttgtaaagctgccactggaacac
acattagcctagtgaaatagtatagctaattgaaccctttccaacagttg
gggcatcttgcacacaagatggcagctctcagtttcaatctcactcctcc
aagcagagaggttttcatgatatcaacaagtacttaaacacacacacaca
cacacacacacacacactcatgcatccacacacaagaaatactaaactat
ccagcaagataatgttacatattcacaccacacaaatgtaatatcaaata
tata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_49471719_49472769
seq2: B6Ng01-114N03.g_67_1120

seq1  GAATTCCAACGCATTAAAATGTATGATTTAAAAGTAACTGCAGAGCCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAACGCATTAAAATGTATGATTTAAAAGTAACTGCAGAGCCCTT  50

seq1  CCTAAACCTCTCAGCATGGCAATGGGAGATCCTGCAGTGGACAGCAAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAACCTCTCAGCATGGCAATGGGAGATCCTGCAGTGGACAGCAAATG  100

seq1  CAGGGAGATTGAAAAGGACAGATGTGGCTGATTTGGTCACATTTCCTGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGAGATTGAAAAGGACAGATGTGGCTGATTTGGTCACATTTCCTGCT  150

seq1  CACCATCTAGATCCTGACCAAGTCCTCTCAAAGGAAAAACAATCCATGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATCTAGATCCTGACCAAGTCCTCTCAAAGGAAAAACAATCCATGAA  200

seq1  TGAGACTTCACATGCATCATGATTAAAAGACAAACAAACAAAAAAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGACTTCACATGCATCATGATTAAAAGACAAACAAACAAAAAAACAAA  250

seq1  AACAAAGAAAATACCACAAACCCCAGAGCTGTCTCACACTAAAGGATCGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAGAAAATACCACAAACCCCAGAGCTGTCTCACACTAAAGGATCGG  300

seq1  GACTTAAGTTTAATTTAGCTAATGAGGCTTTGGAGAGTCAGTTATCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTAAGTTTAATTTAGCTAATGAGGCTTTGGAGAGTCAGTTATCCTCC  350

seq1  CAAGGCTGCTGACGCCAGCAGGACAGCAGAAGAAACTCCATATTTCAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCTGACGCCAGCAGGACAGCAGAAGAAACTCCATATTTCAGCA  400

seq1  GGAGTCCCACCCTACCAGGCGCCACACAGAATGGGACAAACCTGTAGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGTCCCACCCTACCAGGCGCCACACAGAATGGGACAAACCTGTAGATC  450

seq1  CAACTTAGAACATTCCTGGGAGCCCGGTCATGGGTATAACCGCCAAGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTAGAACATTCCTGGGAGCCCGGTCATGGGTATAACCGCCAAGCAG  500

seq1  ACATGAATCAGAATAGCCCAAGAGGCGCCCACAGGATCTTCCAGGTCTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAATCAGAATAGCCCAAGAGGCGCCCACAGGATCTTCCAGGTCTAT  550

seq1  TTTAGGTAATGATCGGAGCCAACAGAAAGTTATATAGAATTCTAGAGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGTAATGATCGGAGCCAACAGAAAGTTATATAGAATTCTAGAGAGA  600

seq1  AACATAGTCAGCAAAGCCAGATGCACAATGATGCGTTCCTAGGGTGTAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAGTCAGCAAAGCCAGATGCACAATGATGCGTTCCTAGGGTGTAAG  650

seq1  ACAACCAACCACGTCTCCTTAAGTTGTCCACTGTACCCTGCCATATTCAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACCAACCACGTCTCCTTAAGTTGTCCACTGTACCCTGCCATATTCAT  700

seq1  AGCACCAGGCCAACATCAGTAACTTACAGACCCACCCTTTAGCCTTACCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACCAGGCCAACATCAGTAACTTACAGACCCACCCTTTAGCCTTACCT  750

seq1  ACAAAGAAACCAGAGACTTAGCCCCTTTTGTAAAGCTGCCACTGGAACAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGAAACCAGAGACTTAGCCCCTTTTGTAAAGCTGCCACTGGAACAC  800

seq1  ACATTAGCCTAGTGAAATAGTATAGCTAATTGAACCCTTTCCAACAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAGCCTAGTGAAATAGTATAGCTAATTGAACCCTTTCCAACAGTTG  850

seq1  GGGCATCTTGCACACAAGATGGCAGCTCTCAGTTTCAATCTCACTCCTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATCTTGCACACAAGATGGCAGCTCTCAGTTTCAATCTCACTCCTCC  900

seq1  AAGCAGAGAGGTTTTCATGATATCAACAAGTACTTAAACACACACACACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAGAGGTTTTCATGATATCAACAAGTACTTAAACACACACACACA  950

seq1  CACACACACACACACACTCATGCATCCACACACAAGAAATACTAAACTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACTCATGCATCCACACACAAGAAATACTAAACTAT  1000

seq1  CCAGC-AGATAATGTTTACATATTCACA-CACACATATGT-ATAT-GTAT  1046
      ||||| |||||||| ||||||||||||| |||||| |||| ||||   ||
seq2  CCAGCAAGATAATG-TTACATATTCACACCACACAAATGTAATATCAAAT  1049

seq1  ATATA  1051
      |||||
seq2  ATATA  1054