BAC Information

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BAC

Clone NameB6Ng01-114O14
Chromosome9 (Build37)
Map Location 108,047,639 - 108,181,745
singlet/doubletdoublet
Overlap geneBsn, LOC100042108, Dag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13, Fbxw12, Fbxw14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-114O14.bB6Ng01-114O14.g
ACCDH920310DH920311
length1,136849
definitionDH920310|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O14, 5' end.DH920311|Mus musculus domesticus DNA, BAC clone: B6Ng01-114O14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,047,639 - 108,048,770)(108,180,898 - 108,181,745)
sequence
gaattcatgagagtcacattttctgagtccttgaatgtctggattcatct
ttgtgctccttagacttgaacagtggttcagcgggacataaatcccgctg
gatttataagtccacactttccttctcaggactcggcaggatcacacgct
gttttctatcacgcactgctcccgcagagaagaatgctggctcaatctga
ctgtcttcctttagtataggttaactttctccctctaaatcggttgtttg
taacctgttctgcatgtcagatatttacattatatgattcatagcaggaa
aattacagttatgaactaacgaagataatttcatggctgggggtcaacac
agcatgaactggaaaaggctgcagcttaggaaggttgggaaccactgctc
tagataaacaagaactcttaatgtttggtgacttcaccaacatatatttg
ggcactggacaatctgttaagtttcaaacccgggacatgtggtgggcaga
ggtgcctatttaacatatcaaagtggacctggtctccaggttctcccagc
atccctcagtccctacctgcttcaggcgatggctggcacaccctgccctg
gaccctgaactctccaacccagggactggctgtccctcccctagaagcac
ttccctatataatccaccctactataccttggcttcccgactgctgtacc
gctctcctccatgcctctcttcctctccccacatggcccaggtcagtttg
gtcacattctttccggactctcagatgtgtctgcctttggctctgctctc
tcacaaatctacagtaaactttcccctccgccacacctaggagcagtcat
gaccttcctttttatttctttttcatttataatccacgtcagtagttcct
gacaccactgcatatgccctttcagtctaagttgggcctggcccttctct
ctctctctctctctctctctctctcatatactgtgttttgagacagggtc
tcattacgtagctcttagaactccactttagaccagaatgacttcaaact
cagagattccccctgccctgttgcctctatagtgcagggaattaaaggtg
gtgtgccatccactgccttgctgaaccacactacac
gaattccaggacagcctgggctatacagaggaaccctgtctcgaaaaaaa
acaaaaaaaaaattatttatttttacttcatgtggatgggtgttttgtct
gcataatatatatttgcctcacttgcatgcagtgccttgtgaggccagaa
gagggtgctagattcccctgaatctggagttacaaggggtggtaagcctc
cacgtggatgctggaattgaacctgggtcctttgcatgaggactaagtgc
tcttaaccactgaaccatctctccattttggcttttactaaccacatgtt
ttatcccctctcaagagaaatccagaatgaagatgactgtggttccagac
agtgtaagacccagggagctattttattttattttttcagatctgttatc
cacaaatttcatcagttttggttgcttcgtttgaggactgcttgaaggat
cagtcagtcacctctgctccatttgtgtccatttggcctggccgtgtcct
gttccactgaacccctcctgggaattcacaaagctagaaggaaaatttgg
attgacccaaaggctcagctaccgtgaagtgacctctcctccagagggac
tcatccagctcctggtttcctgggggtctatttccccatccaggagcgga
aatgtaaacttcttagcttcgaggactgcgactttcacgtctctgctttg
ggcattcttgcatgactgacgatggagtaaagggcttagaaaatgccttt
atcattcatctactgtcctgcttccatggatacactctttttttgttttg
ttttgttttgtttgagacagggttcctctgtatagccgaggctgtcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108047639_108048770
seq2: B6Ng01-114O14.b_51_1186

seq1  GAATTCATGAGAGTCACATTTTCTGAGTCCTTGAATGTCTGGATTCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGAGTCACATTTTCTGAGTCCTTGAATGTCTGGATTCATCT  50

seq1  TTGTGCTCCTTAGACTTGAACAGTGGTTCAGCGGGACATAAATCCCGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCTCCTTAGACTTGAACAGTGGTTCAGCGGGACATAAATCCCGCTG  100

seq1  GATTTATAAGTCCACACTTTCCTTCTCAGGACTCGGCAGGATCACACGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTATAAGTCCACACTTTCCTTCTCAGGACTCGGCAGGATCACACGCT  150

seq1  GTTTTCTATCACGCACTGCTCCCGCAGAGAAGAATGCTGGCTCAATCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTCTATCACGCACTGCTCCCGCAGAGAAGAATGCTGGCTCAATCTGA  200

seq1  CTGTCTTCCTTTAGTATAGGTTAACTTTCTCCCTCTAAATCGGTTGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCCTTTAGTATAGGTTAACTTTCTCCCTCTAAATCGGTTGTTTG  250

seq1  TAACCTGTTCTGCATGTCAGATATTTACATTATATGATTCATAGCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCTGTTCTGCATGTCAGATATTTACATTATATGATTCATAGCAGGAA  300

seq1  AATTACAGTTATGAACTAACGAAGATAATTTCATGGCTGGGGGTCAACAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTACAGTTATGAACTAACGAAGATAATTTCATGGCTGGGGGTCAACAC  350

seq1  AGCATGAACTGGAAAAGGCTGCAGCTTAGGAAGGTTGGGAACCACTGCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGAACTGGAAAAGGCTGCAGCTTAGGAAGGTTGGGAACCACTGCTC  400

seq1  TAGATAAACAAGAACTCTTAATGTTTGGTGACTTCACCAACATATATTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATAAACAAGAACTCTTAATGTTTGGTGACTTCACCAACATATATTTG  450

seq1  GGCACTGGACAATCTGTTAAGTTTCAAACCCGGGACATGTGGTGGGCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGGACAATCTGTTAAGTTTCAAACCCGGGACATGTGGTGGGCAGA  500

seq1  GGTGCCTATTTAACATATCAAAGTGGACCTGGTCTCCAGGTTCTCCCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTATTTAACATATCAAAGTGGACCTGGTCTCCAGGTTCTCCCAGC  550

seq1  ATCCCTCAGTCCCTACCTGCTTCAGGCGATGGCTGGCACACCCTGCCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTCAGTCCCTACCTGCTTCAGGCGATGGCTGGCACACCCTGCCCTG  600

seq1  GACCCTGAACTCTCCAACCCAGGGACTGGCTGTCCCTCCCCTAGAAGCAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTGAACTCTCCAACCCAGGGACTGGCTGTCCCTCCCCTAGAAGCAC  650

seq1  TTCCCTATATAATCCACCCTACTATACCTTGGCTTCCCGACTGCTGTACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCTATATAATCCACCCTACTATACCTTGGCTTCCCGACTGCTGTACC  700

seq1  GCTCTCCTCCATGCCTCTCTTCCTCTCCCCACATGGCCCAGGTCAGTTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCCTCCATGCCTCTCTTCCTCTCCCCACATGGCCCAGGTCAGTTTG  750

seq1  GTCACATTCTTTCCGGACTCTCAGATGTGTCTGCCTTTGGCTCTGCTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATTCTTTCCGGACTCTCAGATGTGTCTGCCTTTGGCTCTGCTCTC  800

seq1  TCACAAATCTACAGTAAACTTTCCCCTCCGCCACACCTAGGAGCAGTCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAATCTACAGTAAACTTTCCCCTCCGCCACACCTAGGAGCAGTCAT  850

seq1  GACCTTCCTTTTTATTTCTTTTTCATTTATAATCCACGTCAGTAGTTCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCCTTTTTATTTCTTTTTCATTTATAATCCACGTCAGTAGTTCCT  900

seq1  GACACCACTGCATATGCCCTTTCAGTCTAAGTTGGGCCTGGCCCTTCTCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCACTGCATATGCCCTTTCAGTCTAAGTTGGGCCTGGCCCTTCTCT  950

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCATTATTACTGTTGTTTTTGAGACAG  1000
      |||||||||||||||||||||||||||   ||||||   |||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCAT--ATACTGT--GTTTTGAGACAG  996

seq1  GGTCTCATTACGTAGCTCTTAGAACT-CACTGTAGACCAGAATGACTTCA  1049
      |||||||||||||||||||||||||| |||| ||||||||||||||||||
seq2  GGTCTCATTACGTAGCTCTTAGAACTCCACTTTAGACCAGAATGACTTCA  1046

seq1  AACTCAGAGA-TCCACCTG-CCTG-TGCCTC-ATAGTGCAGGG-ATTAAA  1094
      |||||||||| ||| |||| |||| |||||| ||||||||||| ||||||
seq2  AACTCAGAGATTCCCCCTGCCCTGTTGCCTCTATAGTGCAGGGAATTAAA  1096

seq1  GGT-GTGTGCCAT-CACTGCCTGGCTGAACACACAC-ACAC  1132
      ||| ||||||||| |||||||| ||||||| ||||| ||||
seq2  GGTGGTGTGCCATCCACTGCCTTGCTGAAC-CACACTACAC  1136

seq1: chr9_108180898_108181745
seq2: B6Ng01-114O14.g_70_918 (reverse)

seq1  CAGGACAGCCAGGGCTATGCAGAGAAACCCTGTCTCAAACAAAACAAAAC  50
      ||||||||||  |||||| ||||| |||||||||||||||||||||||||
seq2  CAGGACAGCCTCGGCTATACAGAGGAACCCTGTCTCAAACAAAACAAAAC  50

seq1  AAAAC-AAAAAAGAGTGTATCCATGGAAGCAGGACAGTAGATGAATGATA  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAAAAAAGAGTGTATCCATGGAAGCAGGACAGTAGATGAATGATA  100

seq1  AAGGCATTTTCTAAGCCCTTTACTCCATCGTCAGTCATGCAAGAATGCCC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATTTTCTAAGCCCTTTACTCCATCGTCAGTCATGCAAGAATGCCC  150

seq1  AAAGCAGAGACGTGAAAGTCGCAGTCCTCGAAGCTAAGAAGTTTACATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGAGACGTGAAAGTCGCAGTCCTCGAAGCTAAGAAGTTTACATTT  200

seq1  CCGCTCCTGGATGGGGAAATAGACCCCCAGGAAACCAGGAGCTGGATGAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCTCCTGGATGGGGAAATAGACCCCCAGGAAACCAGGAGCTGGATGAG  250

seq1  TCCCTCTGGAGGAGAGGTCACTTCACGGTAGCTGAGCCTTTGGGTCAATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCTGGAGGAGAGGTCACTTCACGGTAGCTGAGCCTTTGGGTCAATC  300

seq1  CAAATTTTCCTTCTAGCTTTGTGAATTCCCAGGAGGGGTTCAGTGGAACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTCCTTCTAGCTTTGTGAATTCCCAGGAGGGGTTCAGTGGAACA  350

seq1  GGACACGGCCAGGCCAAATGGACACAAATGGAGCAGAGGTGACTGACTGA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACACGGCCAGGCCAAATGGACACAAATGGAGCAGAGGTGACTGACTGA  400

seq1  TCCTTCAAGCAGTCCTCAAACGAAGCAACCAAAACTGATGAAATTTGTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAAGCAGTCCTCAAACGAAGCAACCAAAACTGATGAAATTTGTGG  450

seq1  ATAACAGATCTGAAAAAATAAAATAAAATAGCTCCCTGGGTCTTACACTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACAGATCTGAAAAAATAAAATAAAATAGCTCCCTGGGTCTTACACTG  500

seq1  TCTGGAACCACAGTCATCTTCATTCTGGATTTCTCTTGAGAGGGGATAAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGAACCACAGTCATCTTCATTCTGGATTTCTCTTGAGAGGGGATAAA  550

seq1  ACATGTGGTTAGTAAAAGCCAAAATGGAGAGATGGTTCAGTGGTTAAGAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGTGGTTAGTAAAAGCCAAAATGGAGAGATGGTTCAGTGGTTAAGAG  600

seq1  CACTTAGTCCTCATGCAAAGGACCCAGGTTCAATTCCAGCATCCACGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTAGTCCTCATGCAAAGGACCCAGGTTCAATTCCAGCATCCACGTGG  650

seq1  AGGCTTACCACCCCTTGTAACTCCAGATTCAGGGGAATCTAGCACCCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTACCACCCCTTGTAACTCCAGATTCAGGGGAATCTAGCACCCTCT  700

seq1  TCTGGCCTCACAAGGCACTGCATGCAAGTGAGGCAAATATATATTATGCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTCACAAGGCACTGCATGCAAGTGAGGCAAATATATATTATGCA  750

seq1  GACAAAACACCCATCCACATGAAGTAAAAATAAATAATTTTTTTTTTGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACACCCATCCACATGAAGTAAAAATAAATAATTTTTTTTTTGTT  800

seq1  TTTTTTCGAGACAGGGTTCCTCTGTATAGCCCAGGCTGTCCTGGAATTC  848
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCGAGACAGGGTTCCTCTGTATAGCCCAGGCTGTCCTGGAATTC  849