BAC Information

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BAC

Clone NameB6Ng01-115G01
Chromosome9 (Build37)
Map Location 48,225,190 - 48,362,912
singlet/doubletdoublet
Overlap geneEG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402
Upstream geneCadm1, LOC100043303, D930028F11Rik, 4432416J03Rik
Downstream geneNnmt, Zbtb16, Htr3a, Htr3b, Usp28, LOC100042785, Zw10, EG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115G01.bB6Ng01-115G01.g
ACCDH920659DH920660
length750672
definitionDH920659|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G01, 5' end.DH920660|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,362,164 - 48,362,912)(48,225,190 - 48,225,880)
sequence
gaattctattattccaacgttttatatttttatatcattaaacctgtttt
gtttttttttttttttttactttgaaaactctcccattctttacatcata
agcaggaagaataggtgttataagtgataggtgtgatttttaattctcta
gtacacagacacaaagtaattaaaataaagcaaagcaaagacccaccagc
ctcccttccatggagtgtgagcatgtaagttaagaaatgagttgtggtaa
ggtttgttctggttggtcttctgttatttcaagacaaggtcacacgcgac
ccgtggcctctgacttttgtagcggacactgaccctgaactcctgatttc
ccctggtcctcctgatcgttctgcctcccttcaccccaagtgctgggatt
ataagcatggactgctgtgcctggctcattataaactttttactaacata
ttttttcaatcattggggtgtgtgtgtgtgtgcgtgtgtgtgaattgttt
aagaccagtatcatctaagaagtcattagaaatgtaaaacttgggacagc
aagatggttccgtgggcaacatgacgacaacttgagtttgagtttgattc
cgcatggtggaagaagagaaccaactcctgaaggttgtgctctgacctcc
atatgcatgctgcggtgtacacacacacacacacacacacacacacacac
acacacacacacacacacacactgcgggagtagggcatggggaggaaggg

gaattcagtccttttagaagttccttgagcaccacatttccataattgga
aagtcacagctccatcattagacagtgatttagtattagctgcaaccggc
catggtatctcactgaaaacagttaactagctctaaggtgactttcccct
ctggactctgatgctgaagttgggggtcgaagtctctaacccaagaagcc
aagttcagccacccatccttgagaagtcaatttaaaaagccaaatgaata
gccctagtcatccaaggagatgtatttgttacaaacctgctgaaaagagg
gacaaagacatcctggagactgcagtgaagtctaccttcaggttctgaaa
ggagactaaagtttaaatagcatcgtggaaatgcatacctaagcagtccc
aacaaggtgtgggagtgcccactattgacccaccgccctccctggaaagc
cggaaacctctttcttagagaggacagtcctctgcttgtgccagcccgtg
ttttttgtcttacagcatgagattcttgggggaaattccatttttttttt
tttttttttttggtttggctttttgagacaggttctcatgagcctggttt
cctggaacttctttggagaccaggtggccccaactcaaatctgctgcccc
tgctccaagctgggattaaagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48362164_48362912
seq2: B6Ng01-115G01.b_47_796 (reverse)

seq1  CCCTTCCT-CCCATGCCCTACTCCCGCAGTGTGTGTGTGTGTGTGTGTGT  49
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCCTCCCCATGCCCTACTCCCGCAGTGTGTGTGTGTGTGTGTGTGT  50

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCGCAGCATGCATAT  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACACCGCAGCATGCATAT  100

seq1  GGAGGTCAGAGCACAACCTTCAGGAGTTGGTTCTCTTCTTCCACCATGCG  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTCAGAGCACAACCTTCAGGAGTTGGTTCTCTTCTTCCACCATGCG  150

seq1  GAATCAAACTCAAACTCAAGTTGTCGTCATGTTGCCCACGGAACCATCTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAAACTCAAACTCAAGTTGTCGTCATGTTGCCCACGGAACCATCTT  200

seq1  GCTGTCCCAAGTTTTACATTTCTAATGACTTCTTAGATGATACTGGTCTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCCCAAGTTTTACATTTCTAATGACTTCTTAGATGATACTGGTCTT  250

seq1  AAACAATTCACACACACGCACACACACACACACCCCAATGATTGAAAAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAATTCACACACACGCACACACACACACACCCCAATGATTGAAAAAA  300

seq1  TATGTTAGTAAAAAGTTTATAATGAGCCAGGCACAGCAGTCCATGCTTAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTAGTAAAAAGTTTATAATGAGCCAGGCACAGCAGTCCATGCTTAT  350

seq1  AATCCCAGCACTTGGGGTGAAGGGAGGCAGAACGATCAGGAGGACCAGGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCAGCACTTGGGGTGAAGGGAGGCAGAACGATCAGGAGGACCAGGG  400

seq1  GAAATCAGGAGTTCAGGGTCAGTGTCCGCTACAAAAGTCAGAGGCCACGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCAGGAGTTCAGGGTCAGTGTCCGCTACAAAAGTCAGAGGCCACGG  450

seq1  GTCGCGTGTGACCTTGTCTTGAAATAACAGAAGACCAACCAGAACAAACC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGCGTGTGACCTTGTCTTGAAATAACAGAAGACCAACCAGAACAAACC  500

seq1  TTACCACAACTCATTTCTTAACTTACATGCTCACACTCCATGGAAGGGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCACAACTCATTTCTTAACTTACATGCTCACACTCCATGGAAGGGAG  550

seq1  GCTGGTGGGTCTTTGCTTTGCTTTATTTTAATTACTTTGTGTCTGTGTAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGGGTCTTTGCTTTGCTTTATTTTAATTACTTTGTGTCTGTGTAC  600

seq1  TAGAGAATTAAAAATCACACCTATCACTTATAACACCTATTCTTCCTGCT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGAATTAAAAATCACACCTATCACTTATAACACCTATTCTTCCTGCT  650

seq1  TATGATGTAAAGAATGGGAGAGTTTTCAAAGTAAAAAAAAAAAAAAAAAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATGTAAAGAATGGGAGAGTTTTCAAAGTAAAAAAAAAAAAAAAAAC  700

seq1  AAAACAGGTTTAATGATATAAAAATATAAAACGTTGGAATAATAGAATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGGTTTAATGATATAAAAATATAAAACGTTGGAATAATAGAATTC  750

seq1: chr9_48225190_48225880
seq2: B6Ng01-115G01.g_68_739

seq1  GAATTCAGTCCTTTTAGAAGTTCCTTGAGCACCACATTTCCATAATTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTTTTAGAAGTTCCTTGAGCACCACATTTCCATAATTGGA  50

seq1  AAGTCACAGCTCCATCATTAGACAGTGATTTAGTATTAGCTGCAACCGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAGCTCCATCATTAGACAGTGATTTAGTATTAGCTGCAACCGGC  100

seq1  CATGGTATCTCACTGAAAACAGTTAACTAGCTCTAAGGTGACTTTCCCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTATCTCACTGAAAACAGTTAACTAGCTCTAAGGTGACTTTCCCCT  150

seq1  CTGGACTCTGATGCTGAAGTTGGGGGTCGAAGTCTCTAACCCAAGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACTCTGATGCTGAAGTTGGGGGTCGAAGTCTCTAACCCAAGAAGCC  200

seq1  AAGTTCAGCCACCCATCCTTGAGAAGTCAATTTAAAAAGCCAAATGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCAGCCACCCATCCTTGAGAAGTCAATTTAAAAAGCCAAATGAATA  250

seq1  GCCCTAGTCATCCAAGGAGATGTATTTGTTACAAACCTGCTGAAAAGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAGTCATCCAAGGAGATGTATTTGTTACAAACCTGCTGAAAAGAGG  300

seq1  GACAAAGACATCCTGGAGACTGCAGTGAAGTCTACCTTCAGGTTCTGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAGACATCCTGGAGACTGCAGTGAAGTCTACCTTCAGGTTCTGAAA  350

seq1  GGAGACTAAAGTTTAAATAGCATCGTGGAAATGCATACCTAAGCAGTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTAAAGTTTAAATAGCATCGTGGAAATGCATACCTAAGCAGTCCC  400

seq1  AACAAGGTGTGGGAGTGCCCACTATTGACCCACCGCCCTCCCTGGAAAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGTGTGGGAGTGCCCACTATTGACCCACCGCCCTCCCTGGAAAGC  450

seq1  CGGAAACCTCTTTCTTAGAGAGGACAGTCCTCTGCTTGTGCCAGCCCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAAACCTCTTTCTTAGAGAGGACAGTCCTCTGCTTGTGCCAGCCCGTG  500

seq1  TTTTTTGTCTTACAGCATGAGATTCTT-GGGGAAATTCCATTTTTTTTTT  549
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTTTTTGTCTTACAGCATGAGATTCTTGGGGGAAATTCCATTTTTTTTTT  550

seq1  TTTTTTTTTTTTTGTTTTTGGCTTTTTGAGACAGGGTTTCTCTATGTAGC  599
      |||||||||||     |||||||||||||||||||  ||||| ||| || 
seq2  TTTTTTTTTTT---GGTTTGGCTTTTTGAGACAGG--TTCTC-ATG-AG-  592

seq1  CCTGGCTGTCCTGGAACTCACTTTTGTAGACCAGGCTGGCCTCGAACTCA  649
      ||||| | ||||||||||    |||| |||||||| ||||| | ||||| 
seq2  CCTGG-TTTCCTGGAACT--TCTTTGGAGACCAGG-TGGCC-CCAACTC-  636

seq1  GAAATCTGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGG  691
       ||||||| ||||| ||| ||||     ||||||||||||||
seq2  -AAATCTG-CTGCCCCTG-CTCC---AAGCTGGGATTAAAGG  672