BAC Information

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BAC

Clone NameB6Ng01-115G19
Chromosome9 (Build37)
Map Location 52,376,608 - 52,518,600
singlet/doubletdoublet
Overlap geneAI593442, Gm1715
Upstream geneLOC640374, LOC668070, Arhgap20, LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876
Downstream geneDdx10, Exph5, Kdelc2, 4930550C14Rik, Atm, Npat, Acat1, Cul5, Rab39, EG434404
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115G19.bB6Ng01-115G19.g
ACCDH920695DH920696
length5491,167
definitionDH920695|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G19, 5' end.DH920696|Mus musculus domesticus DNA, BAC clone: B6Ng01-115G19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,518,046 - 52,518,600)(52,376,608 - 52,377,794)
sequence
attctttggggctttagcataaagggatagcacaaatggcatggcggaag
gacagctgtgtgagaaacatactctgtccatttttttctcaagacttcaa
aactttatactggtttaaatatgtttacatctttctctcttcttgaaatg
tagtgtgtgtttctctctcttgcacttattttggtaaactgatttttgtt
gagtaacactgggtaaagatcgaaagcctcagtacgagggcaaagcaagg
ctttcctcaaacagtcggctttctcaggtctgctcagcagcatcaaatgc
tgccagtatgtgggactcagagatgggtaggatcggtgcctgcatctctg
tgagttatatgaagatgtttcatctcactgctaatgggagaagtgtgaat
taaaacaacgatgagctagaaagataaaggaatcaaaacatttcatcaaa
ataactgagtgactcacacaggaagccagcaggaacagaaaagtagaaca
agagaactgtgagacacacagggagagagagaggagagagagagagaga
gaattcctaagttctgggtgtttgttcaggctgctgaattgagaaagaat
acatttttgcttatttgcagatgtgcacaaacaagcttgaatacttaaaa
tgttcaattcaagatttggtgaacaaggaaatctattattgaaacaacac
tgaacaacagcttagatgtggatccgctacattctaagaagtgtctgggc
aagtgtggcttgctagtgagttccattagtgccacttgctattttaattc
tgttgacttgggatgcaaaacccaagttcccaaatccactggggcttctc
cagaactgtacaaacgagtagagggaggcccttccactagccagagaaac
atggcactcaagtagctgagcactgttgctttctgtcacctttcccgtaa
cttcggatgctacactgttgacacagggttgttttctgtgataggaagtc
cagctcacagttttccaaaagttctttctctctttgaagttctttctcac
tcattctaatggaggctgggctgacaggcagaggggtcagacgaatcctc
acaggtctgctcagagtcaaatcaacaacagaaagaaatgtctgggtgag
cgtgcgtggaagctttggacagaactggggcagaggtgctaggcctgtca
ggggacgtccatggggaggaggctatgcttgacatgagagtccagatccc
tggcagcctgagtcttggtgcactgtggcagactgaaatcaagtatatga
aaaacatcatgattccaagttgaataccagcgtgggttcctttctactcg
ggtacattcctaatatgctcctcagatgtcaccccacagccatagtgtga
caccagcccaacactacagtgtctgtccttcaattctgctggtttcgcca
attacactctcaagagtttggctgaagaaagggaaagagaccgagaaaga
gagatgagatacagagagagtcaggagacagaaagaagtagaatggcatt
agtctttttaaatcttcaaggctccacccacagacaaatccctttcacag
gtcacagctcctattcttccaacatttcttactactgaagtcagtattca
tattgtattctatgaacaactctcatccatctcccactgttaggcatttc
atgtatctagcctatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_52518046_52518600
seq2: B6Ng01-115G19.b_44_598 (reverse)

seq1  TCTCTCTCTCTCTCTCCTCTCTCTCTCCCTGTGTGTCTCACAGTTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCCTCTCTCTCTCCCTGTGTGTCTCACAGTTCTCTT  50

seq1  GTTCTACTTTTCTGTTCCTGCTGGCTTCCTGTGTGAGTCACTCAGTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTACTTTTCTGTTCCTGCTGGCTTCCTGTGTGAGTCACTCAGTTATT  100

seq1  TTGATGAAATGTTTTGATTCCTTTATCTTTCTAGCTCATCGTTGTTTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGAAATGTTTTGATTCCTTTATCTTTCTAGCTCATCGTTGTTTTAA  150

seq1  TTCACACTTCTCCCATTAGCAGTGAGATGAAACATCTTCATATAACTCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACTTCTCCCATTAGCAGTGAGATGAAACATCTTCATATAACTCAC  200

seq1  AGAGATGCAGGCACCGATCCTACCCATCTCTGAGTCCCACATACTGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATGCAGGCACCGATCCTACCCATCTCTGAGTCCCACATACTGGCAG  250

seq1  CATTTGATGCTGCTGAGCAGACCTGAGAAAGCCGACTGTTTGAGGAAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGATGCTGCTGAGCAGACCTGAGAAAGCCGACTGTTTGAGGAAAGC  300

seq1  CTTGCTTTGCCCTCGTACTGAGGCTTTCGATCTTTACCCAGTGTTACTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTTTGCCCTCGTACTGAGGCTTTCGATCTTTACCCAGTGTTACTCA  350

seq1  ACAAAAATCAGTTTACCAAAATAAGTGCAAGAGAGAGAAACACACACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAAATCAGTTTACCAAAATAAGTGCAAGAGAGAGAAACACACACTAC  400

seq1  ATTTCAAGAAGAGAGAAAGATGTAAACATATTTAAACCAGTATAAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAAGAAGAGAGAAAGATGTAAACATATTTAAACCAGTATAAAGTTT  450

seq1  TGAAGTCTTGAGAAAAAAATGGACAGAGTATGTTTCTCACACAGCTGTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTTGAGAAAAAAATGGACAGAGTATGTTTCTCACACAGCTGTCC  500

seq1  TTCCGCCATGCCATTTGTGCTATCCCTTTATGCTAAAGCCCCAAAGAATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCCATGCCATTTGTGCTATCCCTTTATGCTAAAGCCCCAAAGAATG  550

seq1  AATTC  555
      |||||
seq2  AATTC  555

seq1: chr9_52376608_52377794
seq2: B6Ng01-115G19.g_68_1234

seq1  GAATTCCTAAGTTCTGGGTGTTTGTTCAGGCTGCTGAATTGAGAAAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAAGTTCTGGGTGTTTGTTCAGGCTGCTGAATTGAGAAAGAAT  50

seq1  ACATTTTTGCTTATTTGCAGATGTGCACAAACAAGCTTGAATACTTAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTTTGCTTATTTGCAGATGTGCACAAACAAGCTTGAATACTTAAAA  100

seq1  TGTTCAATTCAAGATTTGGTGAACAAGGAAATCTATTATTGAAACAACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAATTCAAGATTTGGTGAACAAGGAAATCTATTATTGAAACAACAC  150

seq1  TGAACAACAGCTTAGATGTGGATCCGCTACATTCTAAGAAGTGTCTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACAACAGCTTAGATGTGGATCCGCTACATTCTAAGAAGTGTCTGGGC  200

seq1  AAGTGTGGCTTGCTAGTGAGTTCCATTAGTGCCACTTGCTATTTTAATTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTGGCTTGCTAGTGAGTTCCATTAGTGCCACTTGCTATTTTAATTC  250

seq1  TGTTGACTTGGGATGCAAAACCCAAGTTCCCAAATCCACTGGGGCTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTTGGGATGCAAAACCCAAGTTCCCAAATCCACTGGGGCTTCTC  300

seq1  CAGAACTGTACAAACGAGTAGAGGGAGGCCCTTCCACTAGCCAGAGAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACTGTACAAACGAGTAGAGGGAGGCCCTTCCACTAGCCAGAGAAAC  350

seq1  ATGGCACTCAAGTAGCTGAGCACTGTTGCTTTCTGTCACCTTTCCCGTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCACTCAAGTAGCTGAGCACTGTTGCTTTCTGTCACCTTTCCCGTAA  400

seq1  CTTCGGATGCTACACTGTTGACACAGGGTTGTTTTCTGTGATAGGAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGATGCTACACTGTTGACACAGGGTTGTTTTCTGTGATAGGAAGTC  450

seq1  CAGCTCACAGTTTTCCAAAAGTTCTTTCTCTCTTTGAAGTTCTTTCTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCACAGTTTTCCAAAAGTTCTTTCTCTCTTTGAAGTTCTTTCTCAC  500

seq1  TCATTCTAATGGAGGCTGGGCTGACAGGCAGAGGGGTCAGACGAATCCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCTAATGGAGGCTGGGCTGACAGGCAGAGGGGTCAGACGAATCCTC  550

seq1  ACAGGTCTGCTCAGAGTCAAATCAACAACAGAAAGAAATGTCTGGGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTCTGCTCAGAGTCAAATCAACAACAGAAAGAAATGTCTGGGTGAG  600

seq1  CGTGCGTGGAAGCTTTGGACAGAACTGGGGCAGAGGTGCTAGGCCTGTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCGTGGAAGCTTTGGACAGAACTGGGGCAGAGGTGCTAGGCCTGTCA  650

seq1  GGGGACGTCCATGGGGAGGAGGCTATGCTTGACATGAGAGTCCAGATCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGACGTCCATGGGGAGGAGGCTATGCTTGACATGAGAGTCCAGATCCC  700

seq1  TGGCAGCCTGAGTCTTGGTGCACTGTGGCAGACTGAAATCAAGTATATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAGCCTGAGTCTTGGTGCACTGTGGCAGACTGAAATCAAGTATATGA  750

seq1  AAAACATCATGATTCCAAGTTGAATACCAGCGTGGGTTCCTTTCTACTCG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATCATGATTCCAAGTTGAATACCAGCGTGGGTTCCTTTCTACTCG  800

seq1  GGTACATTCCTAATATGCTCCTCAGATGTCACCCCACAGCCATAGTGTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACATTCCTAATATGCTCCTCAGATGTCACCCCACAGCCATAGTGTGA  850

seq1  CACCAGCCCAACACTACAGTGTCTGTCC-TCCATTCTGCTGGTTTCGCCA  899
      |||||||||||||||||||||||||||| || ||||||||||||||||||
seq2  CACCAGCCCAACACTACAGTGTCTGTCCTTCAATTCTGCTGGTTTCGCCA  900

seq1  ATTACACTCTCAGGAGTTTGGCTGAAAGAAAGGGAAAGAGACCGAGAAAG  949
      |||||||||||| ||||||||||| |||||||||||||||||||||||||
seq2  ATTACACTCTCAAGAGTTTGGCTG-AAGAAAGGGAAAGAGACCGAGAAAG  949

seq1  AGAGACAGAGATACAGAGAGAGTCA-GAGACAGAAAGAAGTAGAAATGGC  998
      |||||  |||||||||||||||||| ||||||||||||||||| ||||||
seq2  AGAGA-TGAGATACAGAGAGAGTCAGGAGACAGAAAGAAGTAG-AATGGC  997

seq1  ATTAGTCTTTTTAAAATCTCAAAGGCTCCCACCCACAGACACATCCCCTT  1048
      |||||||||||| ||||||  |||||| ||||||||||||| ||||| ||
seq2  ATTAGTCTTTTT-AAATCTTCAAGGCT-CCACCCACAGACAAATCCCTTT  1045

seq1  CAACAGGTTCACAGCTCCTAATCCTTCCCAAACATTTCTACATACTGAGG  1098
      | ||||| ||||||||||| || |||||  |||||||||   ||||||  
seq2  C-ACAGG-TCACAGCTCCT-ATTCTTCC--AACATTTCTTACTACTGA-A  1089

seq1  GTCAGTTATTCCAATATGTAATTCTATGGAAACAACTCTCATTCAAATCT  1148
      ||||| |||||  ||||   ||||||||  |||||||||||| |  ||||
seq2  GTCAG-TATTC--ATATTGTATTCTATG--AACAACTCTCATCC--ATCT  1132

seq1  CCACATGTTATGCCATTTCATGGGATCCTCAGCCTATCT  1187
      ||   ||||| | |||||||| | |||   |||||||||
seq2  CCCACTGTTA-GGCATTTCAT-GTATC--TAGCCTATCT  1167