BAC Information

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BAC

Clone NameB6Ng01-115L21
Chromosome9 (Build37)
Map Location 99,730,450 - 99,899,944
singlet/doubletdoublet
Overlap geneSox14, LOC667456
Upstream geneEG623166, EG623186, 2410012M07Rik, LOC546155, LOC100040370, 7420426K07Rik, LOC100040380, LOC667347, Foxl2os, Foxl2, Faim, Gm1123, Pik3cb, LOC100040442, LOC100040757, EG623459, Cep70, D9Ertd280e, Mras, LOC623534, Armc8, Dbr1, A4gnt, Dzip1l, Cldn18, EG667429
Downstream gene4930519F24Rik, LOC100040590, Il20rb, Nck1, LOC633385, Tmem22, LOC667486, Stag1, LOC100040990, Pccb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115L21.bB6Ng01-115L21.g
ACCDH920926DH920927
length1,0501,119
definitionDH920926|Mus musculus domesticus DNA, BAC clone: B6Ng01-115L21, 5' end.DH920927|Mus musculus domesticus DNA, BAC clone: B6Ng01-115L21, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(99,730,450 - 99,731,500)(99,898,780 - 99,899,944)
sequence
gaattctttcatgtggagtaggtagatctcagatccaaccagaaggtctc
atatcactcccataactatgtttttatttcccctgttttttatatatata
tatatattttttattaggtattttcctcatttacatttccaatgctatcc
caaaagtcccccatacgctcccccccatgcccctacccacccactcccac
ttttttggccctggcgttcccctgtactggggcatataaagtttgcaaat
ccaatgggcctctctttccagtgatagccgactaggccatcttttgatat
acatgcagctagagtcaagagctccggggtactggttagttcataatgtt
gttccacctatagggttgcagatccctttagctccttgagtactttctct
agctccttcattgggggccctgtgatccattcaatagctgactgtgagca
tccacttctgtgtttgctaggcccctgcatagtctcacaagagacagcca
tatctgggtcctttcagcaaaatcttgctagtgtatgcaatggtgtcagc
gtttggaagctgattatgggatggatccccggatatgacagtctctagat
ggtccatgcttttgtcacagctccaaactttgtctctgtaactctttcca
tgggtgttttgttcccaattctaagaaagggcagggtttctctgtgtaac
cctggctgtcctggaactcactctgtagaccaggttgggcttgaagtcac
agacattcgcctgcctctgctcctgagtgctgggataaaaggcatgggcc
accactgctggctccatagcagtcattaaagatatggcctggggatgctg
gtgacaggaggacaggaggagctgaggggccagtcagacaccatatcaaa
caaaacactcttcgagcagcctgtggatctctttctctcagcttgcagag
gcctcatttacgatgtcacaatgattgtaaactaccgattattgatttac
aaagatggtgaaataactatatagggggatgtggacaggtggaggagggg

gaattccaattatgaggaagacctgaattgttagaaacaaaatattcttt
ccaatcttacttcaataacatttttcttatatttactgctacatcagtca
aaatcgtatttctgccctgttcctttattattatttttttttctgagatt
ctaagtcttttctttaacttcaatggtatttttttggcctcctctctctg
aggagttgttcagcactatgaatacaaacgcactgcgaagaaatctcagc
tcattgttgtagcctcagacactggaaatgtgtatgtgtttatttcctat
tctcatggtgaaaacagaatatctggccataaaagtttcggagagggcaa
attcttcttaggtctcttttccacttgtgtgaagtggccacctaaagatt
caaagttgatgatttcccctttcttcaattaacttgactgcagcactcag
aactctgctggactctgcagagattagccttgcttacctcaatagctggc
tggtggctaaggatacatcctatggccaccacctagaaaagtctccttgt
tcgtttaccaagtgaacaccaacatgtagaaatggctgagctacatcctg
cagagaaccagggatgtgaagaaacccagtaccaggtctttcagcaaagg
agtaatgactagaagagttacacagttaattttaactaacgttccttctt
tatttcagtgcctgcaggcaaactttcttagataagtgatgaacctggtg
agcaccaagttttaaggaatagctagtattgcaaaagttggatagtattc
ctaaacacagagtaggagatggaacaaaacagagaagttagatccaagat
ttaaaggaattctaagaaaatgtattcactttgcaaataatgaaagaaag
aaagaaagaaagaaagaaagaaagaaagaagaatgatgagatgatgaaga
agaagaagaagagaagaagaagaagaagaagaagagagaaggggagagtt
ttatgtgtggctgaacatcacacatgtcaaagaaccagtaattaattcag
tgtcactctacccagcgttctttctctcttttagagtgagtctcttatgt
actccagctggcttgaact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_99730450_99731500
seq2: B6Ng01-115L21.b_46_1095

seq1  GAATTCTTTCATGTGGAGTAGGTAGATCTCAGATCCAACCAGAAGGTCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCATGTGGAGTAGGTAGATCTCAGATCCAACCAGAAGGTCTC  50

seq1  ATATCACTCCCATAACTATGTTTTTATTTCCCCTGTTTTTTATATATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCACTCCCATAACTATGTTTTTATTTCCCCTGTTTTTTATATATATA  100

seq1  TATATATTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTTTTTATTAGGTATTTTCCTCATTTACATTTCCAATGCTATCC  150

seq1  CAAAAGTCCCCCATACGCTCCCCCCCATGCCCCTACCCACCCACTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTCCCCCATACGCTCCCCCCCATGCCCCTACCCACCCACTCCCAC  200

seq1  TTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTGGCCCTGGCGTTCCCCTGTACTGGGGCATATAAAGTTTGCAAAT  250

seq1  CCAATGGGCCTCTCTTTCCAGTGATAGCCGACTAGGCCATCTTTTGATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGGCCTCTCTTTCCAGTGATAGCCGACTAGGCCATCTTTTGATAT  300

seq1  ACATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTTAGTTCATAATGTT  350

seq1  GTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGAGTACTTTCTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTTGAGTACTTTCTCT  400

seq1  AGCTCCTTCATTGGGGGCCCTGTGATCCATTCAATAGCTGACTGTGAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTTCATTGGGGGCCCTGTGATCCATTCAATAGCTGACTGTGAGCA  450

seq1  TCCACTTCTGTGTTTGCTAGGCCCCTGCATAGTCTCACAAGAGACAGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTTCTGTGTTTGCTAGGCCCCTGCATAGTCTCACAAGAGACAGCCA  500

seq1  TATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGGGTCCTTTCAGCAAAATCTTGCTAGTGTATGCAATGGTGTCAGC  550

seq1  GTTTGGAAGCTGATTATGGGATGGATCCCCGGATATGACAGTCTCTAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGGAAGCTGATTATGGGATGGATCCCCGGATATGACAGTCTCTAGAT  600

seq1  GGTCCATGCTTTTGTCACAGCTCCAAACTTTGTCTCTGTAACTCTTTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCATGCTTTTGTCACAGCTCCAAACTTTGTCTCTGTAACTCTTTCCA  650

seq1  TGGGTGTTTTGTTCCCAATTCTAAGAAAGGGCAGGGTTTCTCTGTGTAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTTTGTTCCCAATTCTAAGAAAGGGCAGGGTTTCTCTGTGTAAC  700

seq1  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGGCTTGAAGTCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACTCACTCTGTAGACCAGGTTGGGCTTGAAGTCAC  750

seq1  AGACATTCGCCTGCCTCTGCTCCTGAGTGCTGGGATAAAAGGCATGGGCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCGCCTGCCTCTGCTCCTGAGTGCTGGGATAAAAGGCATGGGCC  800

seq1  ACCACTGCTGGCTCCATAGCAGTCATTAAAGATATGGCCTGGGGATGCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACTGCTGGCTCCATAGCAGTCATTAAAGATATGGCCTGGGGATGCTG  850

seq1  GTGACAGGAGGACAGGAGGAGCTGAGGGGGCCAGTCAGACACCATATCAA  900
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGACAGGAGGACAGGAGGAGCTGA-GGGGCCAGTCAGACACCATATCAA  899

seq1  ACAAAACACTCTCCGAGCAGCCCTGTGGATC-CCTTCCCTCAGCTTGCAG  949
      |||||||||||| ||||||| |||||||||| | ||| ||||||||||||
seq2  ACAAAACACTCTTCGAGCAG-CCTGTGGATCTCTTTCTCTCAGCTTGCAG  948

seq1  AGGCCTCATTTACGATGTCACAATGA-TGTAAACTACCGATTATTGATTT  998
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGGCCTCATTTACGATGTCACAATGATTGTAAACTACCGATTATTGATTT  998

seq1  AACAAAGATGGTGAAATAACTATATTAGGGGGATGTGGACAGGT-GAGGA  1047
       ||||||||||||||||||||||| ||||||||||||||||||| |||||
seq2  -ACAAAGATGGTGAAATAACTATA-TAGGGGGATGTGGACAGGTGGAGGA  1046

seq1  GGGG  1051
      ||||
seq2  GGGG  1050

seq1: chr9_99898780_99899944
seq2: B6Ng01-115L21.g_68_1186 (reverse)

seq1  AGTTCAAGGCCAGCCTGGAGTACATAAGGAGACTCACTCTAAAAAGAGGA  50
      ||||||| ||||| ||||||||||||| |||||||||||| |||||| ||
seq2  AGTTCAA-GCCAG-CTGGAGTACATAA-GAGACTCACTCT-AAAAGA-GA  45

seq1  GAAAGAAACGCTGGGTAGAAGTGACACTGGAATTATATAACTGGTGTCTT  100
      ||||| |||||||||||| ||||||||| |||||| || |||||| ||||
seq2  GAAAG-AACGCTGGGTAG-AGTGACACT-GAATTA-ATTACTGGT-TCTT  90

seq1  TGACATGTGTGATGTTCCAGCCCACACATAGAACCTCTTCCTCTTTCTTT  150
      |||||||||||||||| ||| ||||||||| |||                
seq2  TGACATGTGTGATGTT-CAG-CCACACATAAAAC----------------  122

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCT  200
             |||  | |||| ||||   |||||   |||||   |||||   
seq2  -------TCTCCCCTTCTCTCTT--CTTCTT--CTTCTT--CTTCTTCTC  159

seq1  TTCTTTCTTTCTTTCCTTCCTTCCTTCCTTCCTTCCTTCTTTCTTTCTTT  250
      |||||   |||||  ||| | || |  | || || |||||||||||||||
seq2  TTCTT--CTTCTT--CTT-CATCATCTCATCATT-CTTCTTTCTTTCTTT  203

seq1  CTTTCTTTCTTTCTTTCTTTCTTTCATTATTTGCAAAGTGAATACATTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTCTTTCTTTCTTTCTTTCATTATTTGCAAAGTGAATACATTTT  253

seq1  CTTAGAATTCC-TTAAATCTTGGATCTAACTTCTCTGTTTTGTTCCATCT  349
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATTCCTTTAAATCTTGGATCTAACTTCTCTGTTTTGTTCCATCT  303

seq1  CCTACTCTGTGTTTAGGAATACTATCCAACTTTTGCAATACTAGCTATTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCTGTGTTTAGGAATACTATCCAACTTTTGCAATACTAGCTATTC  353

seq1  CTTAAAACTTGGTGCTCACCAGGTTCATCACTTATCTAAGAAAGTTTGCC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAAACTTGGTGCTCACCAGGTTCATCACTTATCTAAGAAAGTTTGCC  403

seq1  TGCAGGCACTGAAATAAAGAAGGAACGTTAGTTAAAATTAACTGTGTAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGGCACTGAAATAAAGAAGGAACGTTAGTTAAAATTAACTGTGTAAC  453

seq1  TCTTCTAGTCATTACTCCTTTGCTGAAAGACCTGGTACTGGGTTTCTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTAGTCATTACTCCTTTGCTGAAAGACCTGGTACTGGGTTTCTTCA  503

seq1  CATCCCTGGTTCTCTGCAGGATGTAGCTCAGCCATTTCTACATGTTGGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCTGGTTCTCTGCAGGATGTAGCTCAGCCATTTCTACATGTTGGTG  553

seq1  TTCACTTGGTAAACGAACAAGGAGACTTTTCTAGGTGGTGGCCATAGGAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTTGGTAAACGAACAAGGAGACTTTTCTAGGTGGTGGCCATAGGAT  603

seq1  GTATCCTTAGCCACCAGCCAGCTATTGAGGTAAGCAAGGCTAATCTCTGC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCCTTAGCCACCAGCCAGCTATTGAGGTAAGCAAGGCTAATCTCTGC  653

seq1  AGAGTCCAGCAGAGTTCTGAGTGCTGCAGTCAAGTTAATTGAAGAAAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAGCAGAGTTCTGAGTGCTGCAGTCAAGTTAATTGAAGAAAGGG  703

seq1  GAAATCATCAACTTTGAATCTTTAGGTGGCCACTTCACACAAGTGGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCATCAACTTTGAATCTTTAGGTGGCCACTTCACACAAGTGGAAAA  753

seq1  GAGACCTAAGAAGAATTTGCCCTCTCCGAAACTTTTATGGCCAGATATTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACCTAAGAAGAATTTGCCCTCTCCGAAACTTTTATGGCCAGATATTC  803

seq1  TGTTTTCACCATGAGAATAGGAAATAAACACATACACATTTCCAGTGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCACCATGAGAATAGGAAATAAACACATACACATTTCCAGTGTCT  853

seq1  GAGGCTACAACAATGAGCTGAGATTTCTTCGCAGTGCGTTTGTATTCATA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTACAACAATGAGCTGAGATTTCTTCGCAGTGCGTTTGTATTCATA  903

seq1  GTGCTGAACAACTCCTCAGAGAGAGGAGGCCAAAAAAATACCATTGAAGT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGAACAACTCCTCAGAGAGAGGAGGCCAAAAAAATACCATTGAAGT  953

seq1  TAAAGAAAAGACTTAGAATCTCAGAAAAAAAAATAATAATAAAGGAACAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAAAAGACTTAGAATCTCAGAAAAAAAAATAATAATAAAGGAACAG  1003

seq1  GGCAGAAATACGATTTTGACTGATGTAGCAGTAAATATAAGAAAAATGTT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGAAATACGATTTTGACTGATGTAGCAGTAAATATAAGAAAAATGTT  1053

seq1  ATTGAAGTAAGATTGGAAAGAATATTTTGTTTCTAACAATTCAGGTCTTC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGTAAGATTGGAAAGAATATTTTGTTTCTAACAATTCAGGTCTTC  1103

seq1  CTCATAATTGGAATTC  1165
      ||||||||||||||||
seq2  CTCATAATTGGAATTC  1119