BAC Information

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BAC

Clone NameB6Ng01-115P05
Chromosome9 (Build37)
Map Location 34,394,478 - 34,535,919
singlet/doubletdoublet
Overlap geneKirrel3
Upstream geneLOC100042343
Downstream geneSt3gal4, Dcps, Tirap, Foxred1, Srpr, C030004A17Rik, Rpusd4, EG434394, Cdon, Ddx25, Pus3, EG627480, LOC100042442, Svs7, Gm846
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-115P05.bB6Ng01-115P05.g
ACCDH921077DH921078
length1,1721,147
definitionDH921077|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P05, 5' end.DH921078|Mus musculus domesticus DNA, BAC clone: B6Ng01-115P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(34,394,478 - 34,395,667)(34,534,769 - 34,535,919)
sequence
gaattctcaagggagctgggcgtggtggggcacacctttaatcccagcac
aggcagaggcaggcgaatttctgagttcaaggccagcctggtcttcaaag
tgagttccaggacagccagggctatacagagaaaccctgtcttggaaaaa
aacaaaaacaaacaaacaaacaaacaaacaaaaagaattctcaaggggtt
cttatgctgttagaccctgatcattgtttctcattagtgcattctcagca
ttttatttattcatttgttgtttgatagaccttctcatcactgtggacct
atgtaaaaatcctagcactcataccacctgaggagagagctttctgtgtc
taagtgtattttcacacacaattctattaagcattgcctgacatgctgta
aaataactgacctctttacaatctcaacattggttcagtgttccagtctc
ccctcatgctcacaagactaggtgctccctcacttacctaactggcacag
agcagtttaatgtcattttatcccctgccttgctaataactgtgatctga
gctctttgttctcatctgtccccatgacaggaagcaatggctttaggcac
tagggtcaagccataaactacctgggaatgccgggattaaaataaccaga
tgaataaggtagtgactcatagacctgtaaccacacagtgattacaggga
gtccatgggcccagcagaatgggacccacggtgacatcctgagcaccagc
ccccaggccccagccgcagagaggaaactgcaaaggtgcttccaggccca
gctgcacggggaggtgccctgcatcagctggtctgtgcagactcacttgg
cttaacgtttctgacaaagtcgcccacaagtgccatcttatcagaggatc
aattttatatcagagggtcattaaattctttttcatgagataaaatgggc
tttcgctgctgcgtgctgtactgccgctcgtccgaaactggagatgaaat
caaagtggagagatttacaaattatcgtcttcagaaaataagctcgctgc
aatgtatttttgatgtggtattgtgcacaagagagaggaaaataaaatct
ctatggccctttttatatacactggaggagctgtgattacggctctgtag
gacagctttctcttggcatcta
gaattcttgcctaatgaacagtagtgtcatagtatatgcacaagaactcc
tcaacatggggtttgaattctttgcttccccacttagtagatgtatgacc
caatgcaacgaatttacctaaccttccatctgtactctgaggatgtaatg
atggagcctacctcatgtgatggttgctctcattacctaaactaacaagg
ctgagctgcccagcacagccatgtttgccaagggcagatattcgcagact
acagagacctttcagaagcttgtgtgtgtgtgtgtgtcatgtacttatat
gtgaaacataaggccatgtagtttcaacagggaaagttagccatggcagc
tactactttaatcttctgcttgtgttcttcaggaggaagaggcataagac
tgaggctggattttggtgtgggtagggttttgatatgtaggagcagcaga
aagtgtcctgggaaatggggaaaaagacaagggaccgcagatctagcaag
gcaaggatatgcttgggagtgataaagaggctactcatggagatgaacct
gggtatgctagcctttggcaaaacccccaagtgtcagagtaaagaggact
ttaaaggtcttcacatatgaagaggggctttatctttgggcacaagcaac
actagtttctcttttgaaacacacacacacacacacacacacacacacac
acacacacacacacacacactgaatgaatctttcacctgccaaacaaggg
agctacttttctggaaagttcatctggaagtaaggtagattgaaaggaaa
gtcagaggcagggaggccagagggtcttgcacattccagatgttgtgatt
aaactgttcttggctgctggatagagagggagcagggaactggaagggaa
aatgagtataggatggagcttcagatctcagggtgtcaggaagaacatgg
ggacatagggctgaagaaagggactcaaacttttctaggcccttcagtga
gctgtgctccctctttcatgcccccgagtgctgactaacctgatgagcag
caagcccttgccctatcagctaaaaactgtatcagtcgcccctacctatc
tttctggaaaggattccaggatgtgggagtttcccactcccatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_34394478_34395667
seq2: B6Ng01-115P05.b_44_1215

seq1  GAATTCTCAAGGGAGCTGGGCGTGGTGGGGCACACCTTTAATCCCAGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAAGGGAGCTGGGCGTGGTGGGGCACACCTTTAATCCCAGCAC  50

seq1  AGGCAGAGGCAGGCGAATTTCTGAGTTCAAGGCCAGCCTGGTCTTCAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGAGGCAGGCGAATTTCTGAGTTCAAGGCCAGCCTGGTCTTCAAAG  100

seq1  TGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGGAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTTGGAAAAA  150

seq1  AACAAAAACAAACAAACAAACAAACAAACAAAAAGAATTCTCAAGGGGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAACAAACAAACAAACAAACAAAAAGAATTCTCAAGGGGTT  200

seq1  CTTATGCTGTTAGACCCTGATCATTGTTTCTCATTAGTGCATTCTCAGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGCTGTTAGACCCTGATCATTGTTTCTCATTAGTGCATTCTCAGCA  250

seq1  TTTTATTTATTCATTTGTTGTTTGATAGACCTTCTCATCACTGTGGACCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTCATTTGTTGTTTGATAGACCTTCTCATCACTGTGGACCT  300

seq1  ATGTAAAAATCCTAGCACTCATACCACCTGAGGAGAGAGCTTTCTGTGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAAAAATCCTAGCACTCATACCACCTGAGGAGAGAGCTTTCTGTGTC  350

seq1  TAAGTGTATTTTCACACACAATTCTATTAAGCATTGCCTGACATGCTGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGTATTTTCACACACAATTCTATTAAGCATTGCCTGACATGCTGTA  400

seq1  AAATAACTGACCTCTTTACAATCTCAACATTGGTTCAGTGTTCCAGTCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAACTGACCTCTTTACAATCTCAACATTGGTTCAGTGTTCCAGTCTC  450

seq1  CCCTCATGCTCACAAGACTAGGTGCTCCCTCACTTACCTAACTGGCACAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATGCTCACAAGACTAGGTGCTCCCTCACTTACCTAACTGGCACAG  500

seq1  AGCAGTTTAATGTCATTTTATCCCCTGCCTTGCTAATAACTGTGATCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTTTAATGTCATTTTATCCCCTGCCTTGCTAATAACTGTGATCTGA  550

seq1  GCTCTTTGTTCTCATCTGTCCCCATGACAGGAAGCAATGGCTTTAGGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTTTGTTCTCATCTGTCCCCATGACAGGAAGCAATGGCTTTAGGCAC  600

seq1  TAGGGTCAAGCCATAAACTACCTGGGAATGCCGGGATTAAAATAACCAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCAAGCCATAAACTACCTGGGAATGCCGGGATTAAAATAACCAGA  650

seq1  TGAATAAGGTAGTGACTCATAGACCTGTAACCACACAGTGATTACAGGGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAGGTAGTGACTCATAGACCTGTAACCACACAGTGATTACAGGGA  700

seq1  GTCCATGGGCCCAGCAGAATGGGACCCACGGTGACATCCTGAGCACCAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATGGGCCCAGCAGAATGGGACCCACGGTGACATCCTGAGCACCAGC  750

seq1  CCCCAGGCCCCAGCCGCAGAGAGGAAACTGC-AAGGTGCTTCCAGGCCCA  799
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCCCAGGCCCCAGCCGCAGAGAGGAAACTGCAAAGGTGCTTCCAGGCCCA  800

seq1  GCTGCACGGGGAGGTGCCCTGCATCAGCTGGTCTGTGCAGACTCACTTGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCACGGGGAGGTGCCCTGCATCAGCTGGTCTGTGCAGACTCACTTGG  850

seq1  CTTAACGTTTCTGACAAAGTCGCCCACAAGTGCCATCTTATCAGAGGATC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAACGTTTCTGACAAAGTCGCCCACAAGTGCCATCTTATCAGAGGATC  900

seq1  AATTTTATATCAGAGGGTCATTAAATTCTTTTTCATGAGAATAAAATGGG  949
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATTTTATATCAGAGGGTCATTAAATTCTTTTTCATGAG-ATAAAATGGG  949

seq1  CTTTCGCTGCTGCGTGCTGTACTGCCGCTCGTCCGAAACTGGAGATGAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCGCTGCTGCGTGCTGTACTGCCGCTCGTCCGAAACTGGAGATGAAA  999

seq1  TCAAAGTGGAAGAGATTTAACCAAATTATCCGTCTTCAGAAAATAAGCTC  1049
      ||||||||| |||||||||  |||||||| ||||||||||||||||||| 
seq2  TCAAAGTGG-AGAGATTTA--CAAATTAT-CGTCTTCAGAAAATAAGCT-  1044

seq1  CGCTGCAAATGTATTTTTGATGTGGTATTGTGCAACATAGAGAGAGGAAA  1099
      |||||| |||||||||||||||||||||||||| ||| ||||||||| ||
seq2  CGCTGC-AATGTATTTTTGATGTGGTATTGTGC-ACA-AGAGAGAGG-AA  1090

seq1  AATAAAAATACTCTAATGGCCCTGTTATATACAAACAGGAGGAGGCTGTG  1149
      |||||||   |||| |||||||| || |||| | || |||||| ||||| 
seq2  AATAAAA--TCTCT-ATGGCCCT-TTTTATATACACTGGAGGA-GCTGT-  1134

seq1  GGTTTAACGCTCTGTAGGAGCAGCTTTCTCTTGCCCATCTA  1190
       | |||  ||||||||||| |||||||||||||  ||||||
seq2  -GATTACGGCTCTGTAGGA-CAGCTTTCTCTTG-GCATCTA  1172

seq1: chr9_34534769_34535919
seq2: B6Ng01-115P05.g_69_1215 (reverse)

seq1  ATGGATGGGATGTGGTAAACT-CCACATTCCTGGAATACATTCTCAG-AA  48
      |||||||||| |||| ||||| ||||| ||||||||| | ||| ||| ||
seq2  ATGGATGGGA-GTGGGAAACTCCCACA-TCCTGGAATCCTTTC-CAGAAA  47

seq1  GATAGGTA-GGGCGACTGATACAGTGTTTTAGCTGATATGGCCAGGTGCT  97
      |||||||| |||||||||||||||| |||||||||||| ||| ||| |||
seq2  GATAGGTAGGGGCGACTGATACAGT-TTTTAGCTGATAGGGCAAGG-GCT  95

seq1  TGCTGCTCATCAGGTTAGTCAGCACTCCGGGGGCATGAAAGAGGGGAGCA  147
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  TGCTGCTCATCAGGTTAGTCAGCACT-CGGGGGCATGAAAGA-GGGAGCA  143

seq1  CAGCTCACTGAAGGGCCTAGGAAAAGTTTGAGTCCCTTTCCTCAGCCCTA  197
      ||||||||||||||||||| |||||||||||||||||||| |||||||||
seq2  CAGCTCACTGAAGGGCCTA-GAAAAGTTTGAGTCCCTTTCTTCAGCCCTA  192

seq1  TTGTCCCCATGTTCTTCCTGACACCCTGAGATCTGAAGCTCCATCCTATA  247
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TGTCCCCATGTTCTTCCTGACACCCTGAGATCTGAAGCTCCATCCTATA  241

seq1  CTCATTCTCCCTTCCAG-TCCCTGCTCCCTCTCTATCCAGCAGCCAAGAA  296
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  CTCATTTTCCCTTCCAGTTCCCTGCTCCCTCTCTATCCAGCAGCCAAGAA  291

seq1  CAGTTTAATCACAACATCTGGAATGTGCAAGACCCTCTGGCCTCCCTGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTAATCACAACATCTGGAATGTGCAAGACCCTCTGGCCTCCCTGCC  341

seq1  TCTGACTTTCC-TTCAATCTACCTTACTTCCAGATGAACTTTCCAGAAAA  395
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TCTGACTTTCCTTTCAATCTACCTTACTTCCAGATGAACTTTCCAGAAAA  391

seq1  GTAGCTCCCTTGTTTGGCAGGTGAAAGATTCATTCAGTGTGTGTGTGTGT  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTCCCTTGTTTGGCAGGTGAAAGATTCATTCAGTGTGTGTGTGTGT  441

seq1  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCAAAAGAGAA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTCAAAAGAGAA  491

seq1  ACTAGTGTTGCTTGTGCCCAAAGATAAAGCCCCTCTTCATATGTGAAGAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTGTTGCTTGTGCCCAAAGATAAAGCCCCTCTTCATATGTGAAGAC  541

seq1  CTTTAAAGTCCTCTTTACTCTGACACTTGGGGGTTTTGCCAAAGGCTAGC  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAAGTCCTCTTTACTCTGACACTTGGGGGTTTTGCCAAAGGCTAGC  591

seq1  ATACCCAGGTTCATCTCCATGAGTAGCCTCTTTATCACTCCCAAGCATAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCCAGGTTCATCTCCATGAGTAGCCTCTTTATCACTCCCAAGCATAT  641

seq1  CCTTGCCTTGCTAGATCTGCGGTCCCTTGTCTTTTTCCCCATTTCCCAGG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGCCTTGCTAGATCTGCGGTCCCTTGTCTTTTTCCCCATTTCCCAGG  691

seq1  ACACTTTCTGCTGCTCCTACATATCAAAACCCTACCCACACCAAAATCCA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTCTGCTGCTCCTACATATCAAAACCCTACCCACACCAAAATCCA  741

seq1  GCCTCAGTCTTATGCCTCTTCCTCCTGAAGAACACAAGCAGAAGATTAAA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCAGTCTTATGCCTCTTCCTCCTGAAGAACACAAGCAGAAGATTAAA  791

seq1  GTAGTAGCTGCCATGGCTAACTTTCCCTGTTGAAACTACATGGCCTTATG  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTAGCTGCCATGGCTAACTTTCCCTGTTGAAACTACATGGCCTTATG  841

seq1  TTTCACATATAAGTACATGACACACACACACACACAAGCTTCTGAAAGGT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATATAAGTACATGACACACACACACACACAAGCTTCTGAAAGGT  891

seq1  CTCTGTAGTCTGCGAATATCTGCCCTTGGCAAACATGGCTGTGCTGGGCA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTAGTCTGCGAATATCTGCCCTTGGCAAACATGGCTGTGCTGGGCA  941

seq1  GCTCAGCCTTGTTAGTTTAGGTAATGAGAGCAACCATCACATGAGGTAGG  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCAGCCTTGTTAGTTTAGGTAATGAGAGCAACCATCACATGAGGTAGG  991

seq1  CTCCATCATTACATCCTCAGAGTACAGATGGAAGGTTAGGTAAATTCGTT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCATCATTACATCCTCAGAGTACAGATGGAAGGTTAGGTAAATTCGTT  1041

seq1  GCATTGGGTCATACATCTACTAAGTGGGGAAGCAAAGAATTCAAACCCCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTGGGTCATACATCTACTAAGTGGGGAAGCAAAGAATTCAAACCCCA  1091

seq1  TGTTGAGGAGTTCTTGTGCATATACTATGACACTACTGTTCATTAGGCAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGAGGAGTTCTTGTGCATATACTATGACACTACTGTTCATTAGGCAA  1141

seq1  GAATTC  1151
      ||||||
seq2  GAATTC  1147