BAC Information

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BAC

Clone NameB6Ng01-116C18
Chromosome9 (Build37)
Map Location 21,812,049 - 22,012,847
singlet/doubletdoublet
Overlap genePrkcsh, Elavl3, Zfp653, Ecsit, EG625409, Cnn1, Elof1, Acp5, Pigyl, LOC100034724, 9530015I07Rik, 1810064F22Rik
Upstream geneMrpl4, Icam1, Icam4, Icam5, Glp1, B230118G17Rik, Raver1, Tyk2, Cdc37, Pde4a, Keap1, Edg8, Atg4d, BC021438, Cdkn2d, Ap1m2, Slc44a2, Ilf3, Qtrt1, Dnm2, Tmed1, AB124611, Carm1, Yipf2, 1810026J23Rik, EG666043, Smarca4, Ldlr, Spc24, Ankrd25, Dock6, EG624219, Rab3d, BC010787, 2510048L02Rik, BC018242, 2310047B19Rik, Epor, Rgl3, C330001K17Rik
Downstream geneZfp809, BC050092, Zfp810, LOC100041826, EG625603, Anln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116C18.bB6Ng01-116C18.g
ACCDH921237DH921238
length164559
definitionDH921237|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C18, 5' end.DH921238|Mus musculus domesticus DNA, BAC clone: B6Ng01-116C18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(22,012,684 - 22,012,847)(21,812,049 - 21,812,613)
sequence
gaattcaacaggtcctggcctgtttatttctagttgcaaaggcaatgaac
attatttttgtcatggctttagttgtgcctcaattgtactgtctgggtcc
ttgacaggagtaggatcttgtgtaaggttttttggtttggtttggtttgg
tttggtttggtttg
taggttggggtctcccactgagccacaccccagtctgtactctggggctc
taggcctgctctgccccgttctgaaacccagccctgttgcttctcagaac
ataaatagacacccaggctgtactgggtgttgtgcaggttagaaccagac
ctgtgcctgcctcgggagtactagaagtcacagcatgctgatggagaggg
aagctcagggtatctagagctttcttgcatggctaccctcacccatctcg
gaggcaggaaatgaaaatttcctggaggaggggctatcttaactaaaatt
ggtagggtaatttaagtcagccatggaaagtattccagatcgaaagaact
gaaaacaaggggggtgggggtcctgaatgttgtccttgagtttcagggca
ggaaaagtgacttgtggagaaagtgaagtttaaatgatggggtgggacag
gtgggcctgatcacacagggcatcgtggcctgcctgcatcaagctctagg
ctcttcagagagccaccgggaaccagtctcaccctgggatgtgggtgtgt
ggggaagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_22012684_22012847
seq2: B6Ng01-116C18.b_40_203 (reverse)

seq1  CAAACCAAACCAAACCAAACCAAACCAAACCAAAAAACCTTACACAAGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCAAACCAAACCAAACCAAACCAAACCAAAAAACCTTACACAAGAT  50

seq1  CCTACTCCTGTCAAGGACCCAGACAGTACAATTGAGGCACAACTAAAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCTGTCAAGGACCCAGACAGTACAATTGAGGCACAACTAAAGCC  100

seq1  ATGACAAAAATAATGTTCATTGCCTTTGCAACTAGAAATAAACAGGCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACAAAAATAATGTTCATTGCCTTTGCAACTAGAAATAAACAGGCCAG  150

seq1  GACCTGTTGAATTC  164
      ||||||||||||||
seq2  GACCTGTTGAATTC  164

seq1: chr9_21812049_21812613
seq2: B6Ng01-116C18.g_70_634

seq1  GAATTCTAGGTTGGGGTCTCCCACTGAGCCACACCCCAGTCTGTACTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGGTTGGGGTCTCCCACTGAGCCACACCCCAGTCTGTACTCTG  50

seq1  GGGCTCTAGGCCTGCTCTGCCCCGTTCTGAAACCCAGCCCTGTTGCTTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTAGGCCTGCTCTGCCCCGTTCTGAAACCCAGCCCTGTTGCTTCT  100

seq1  CAGAACATAAATAGACACCCAGGCTGTACTGGGTGTTGTGCAGGTTAGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACATAAATAGACACCCAGGCTGTACTGGGTGTTGTGCAGGTTAGAA  150

seq1  CCAGACCTGTGCCTGCCTCGGGAGTACTAGAAGTCACAGCATGCTGATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTGTGCCTGCCTCGGGAGTACTAGAAGTCACAGCATGCTGATGG  200

seq1  AGAGGGAAGCTCAGGGTATCTAGAGCTTTCTTGCATGGCTACCCTCACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGAAGCTCAGGGTATCTAGAGCTTTCTTGCATGGCTACCCTCACCC  250

seq1  ATCTCGGAGGCAGGAAATGAAAATTTCCTGGAGGAGGGGCTATCTTAACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCGGAGGCAGGAAATGAAAATTTCCTGGAGGAGGGGCTATCTTAACT  300

seq1  AAAATTGGTAGGGTAATTTAAGTCAGCCATGGAAAGTATTCCAGATCGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTGGTAGGGTAATTTAAGTCAGCCATGGAAAGTATTCCAGATCGAA  350

seq1  AGAACTGAAAACAAGGGGGGTGGGGGTCCTGAATGTTGTCCTTGAGTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTGAAAACAAGGGGGGTGGGGGTCCTGAATGTTGTCCTTGAGTTTC  400

seq1  AGGGCAGGAAAAGTGACTTGTGGAGAAAGTGAAGTTTAAATGATGGGGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGCAGGAAAAGTGACTTGTGGAGAAAGTGAAGTTTAAATGATGGGGTG  450

seq1  GGACAGGTGGGCCTGATCACACAGGGCATCGTGGCCTGCCTGCATCAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGGTGGGCCTGATCACACAGGGCATCGTGGCCTGCCTGCATCAAGC  500

seq1  TCTAGGCTCTTCAGAGAGCCACCGGGAACCAGTCTCACCCTGGGATGTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGCTCTTCAGAGAGCCACCGGGAACCAGTCTCACCCTGGGATGTGG  550

seq1  GTGTGTGGGGAAGAT  565
      |||||||||||||||
seq2  GTGTGTGGGGAAGAT  565