BAC Information

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BAC

Clone NameB6Ng01-116H01
Chromosome9 (Build37)
Map Location 77,736,428 - 77,838,558
singlet/doubletdoublet
Overlap geneElovl5
Upstream geneTinag, LOC436082, 2310046A06Rik, 5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212
Downstream geneGcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373, LOC100042314, Omt2a, EG666383, Omt2b, Gsta2, Dppa5, 2410146L05Rik, LOC666408, LOC100042356, LOC666419, E330016A19Rik, Mto1, Eef1a1, Slc17a5, Cd109, LOC384957, EG666456
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116H01.bB6Ng01-116H01.g
ACCDH921438DH921439
length1,132614
definitionDH921438|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H01, 5' end.DH921439|Mus musculus domesticus DNA, BAC clone: B6Ng01-116H01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,837,410 - 77,838,558)(77,736,428 - 77,737,041)
sequence
gaattcacaaaggcaaagcacaaatgcacataaaaaacaaagaaaaagct
aaaaaagaacagagaccgcagaagcaggacacacaggcagggtctgctcc
ggtctcaggaaataaactagacaaaataaggtaacagcttttagaagagg
caggtatctccggatttttaaaccaaggcaaaaataagagaatttaaaaa
agcaagtccagaatgtgtccctaggggctgcatcagttggggaatgcccc
actcccagagggcgggcgtgccaagcacagaccgtgggaactgtggctag
agatgagaggctcagagaatctgttcttccagtaagggacgtcttacaga
tgagaaaaagaaggggaacaggaaagacagcaacagcggtacagtcagag
ggaagagagatgtcagcaaacccctttctcagctcttgacggggctgcca
tgctgcaccatcttaaaaagccccttgcagagtcagcagcggggtgtctg
gagagcctgtgacctgtaagccctctcagcaaattcaaagtgtcgaggat
gatacaccaaaccctgcccagcagaaaggcccaagtcggctgggaagaaa
acctgaacaaaaaccacgtagcgtgcgagaaggtagaagtctggttgaag
ccagaatctgcaggggcgtaaagacttggttgggttgcatgttgtacacc
tcaaagcaggaatgactccccggggcagggtcaacactgactggtgaatg
atgaagataggaacacgggtttgtgaagccaaccttgccctgacctgcct
ggggctgtgccagtattcccaacaagactcctgaagaagtacccctggag
gcctggccagcatcagtgcaggaccatacaaagccggacagcccagaggt
gaaaacactgtaacttgcctcctgaatgctgagactcaggcttacagagg
agcatgaaagggcatggaggcatcggaagcaagcgggaagaatgccgaag
ctccgacatgagcagctgacggtcagaatgttgttcagtctacagccagg
cagccctctgctttacatttatttctcctatgtacacatttaacatccat
gtcacggtggagctctgtctgtctcttctccc
gaattcttgatttaagagaaacagttgtcccagatgattgtcctggtgtg
accattaagccttctggaggtatatgatgtgtgtcaagggagccatagca
aggagagagaaagggggacagaggaggcctctttttctttcttgttgtta
cataattacaagcacattaatatagaaacacaacctgctgagaccattta
gtgctgcttgcatgtatatgttttcagggctgaccacaaagccattagga
agctcattcctagagaagactttctccttttcatcaaggtcatgaattgc
ccatagctcttcctgtagaaatggggctcagtgagacctctcccctccgt
ggtagcatgtctattggtattatcattgcctagcattgtttaggcagcca
tattgttaggaatccatagctgtagcttctacttctgtgacatgtctagg
aaacacatctcagcaggctttgtaatcctagcccttacaatacctctgtt
cctctcttatgcagtgcaccctgaaccttgatataaggggtgtgctgtag
atctgtcaagtgaaacggaacaacccatggccagtcgttttctgggtttt
gaccactagttctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_77837410_77838558
seq2: B6Ng01-116H01.b_42_1173 (reverse)

seq1  GGGAGAAGAGAACAGGAACAGAGCCCTCCCACGTTGACATTGGATGTTAA  50
      |||||||||| ||||  |||||||    ||||  ||||| ||||||||||
seq2  GGGAGAAGAG-ACAG--ACAGAGC---TCCACCGTGACA-TGGATGTTAA  43

seq1  ATGGTGTTACATAAGGGAGAAATAAATGTAAAAGCAGAGGGCTGCCTGGG  100
      || ||| ||||||  |||||||||||||| |||||||||||||||||  |
seq2  AT-GTG-TACATA--GGAGAAATAAATGT-AAAGCAGAGGGCTGCCT--G  86

seq1  GCTGTAGACTGAAC-ACA-TCTGACCCGTCAGCTGGCTCCTGTCGGAGCT  148
      |||||||||||||| ||| ||||| ||||||||| |||| ||||||||||
seq2  GCTGTAGACTGAACAACATTCTGA-CCGTCAGCT-GCTCATGTCGGAGCT  134

seq1  TCGGCATTCCTTCCCCGCTTGCTTCCCGATGCCTCCATGCCCTTTCATGC  198
      |||||||||  | ||||||||||| |||||||||||||||||||||||||
seq2  TCGGCATTC--TTCCCGCTTGCTT-CCGATGCCTCCATGCCCTTTCATGC  181

seq1  TCCTCTGTAAGCCTGAGTCTCAGCATTCAGGAGGCAAGTTACAGTGTTTT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTAAGCCTGAGTCTCAGCATTCAGGAGGCAAGTTACAGTGTTTT  231

seq1  CACCTCTGGGCTGTCCGGCTTTGTATGGTCCTGCACTGATGCTGGCCAGG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCTGGGCTGTCCGGCTTTGTATGGTCCTGCACTGATGCTGGCCAGG  281

seq1  CCTCCAGGGGTACTTCTTCAGGAGTCTTGTTGGGAATACTGGCACAGCCC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGGGGTACTTCTTCAGGAGTCTTGTTGGGAATACTGGCACAGCCC  331

seq1  CAGGCAGGTCAGGGCAAGGTTGGCTTCACAAACCCGTGTTCCTATCTTCA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGTCAGGGCAAGGTTGGCTTCACAAACCCGTGTTCCTATCTTCA  381

seq1  TCATTCACCAGTCAGTGTTGACCCTGCCCCGGGGAGTCATTCCTGCTTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCACCAGTCAGTGTTGACCCTGCCCCGGGGAGTCATTCCTGCTTTG  431

seq1  AGGTGTACAACATGCAACCCAACCAAGTCTTTACGCCCCTGCAGATTCTG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTACAACATGCAACCCAACCAAGTCTTTACGCCCCTGCAGATTCTG  481

seq1  GCTTCAACCAGACTTCTACCTTCTCGCACGCTACGTGGTTTTTGTTCAGG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCAACCAGACTTCTACCTTCTCGCACGCTACGTGGTTTTTGTTCAGG  531

seq1  TTTTCTTCCCAGCCGACTTGGGCCTTTCTGCTGGGCAGGGTTTGGTGTAT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCCCAGCCGACTTGGGCCTTTCTGCTGGGCAGGGTTTGGTGTAT  581

seq1  CATCCTCGACACTTTGAATTTGCTGAGAGGGCTTACAGGTCACAGGCTCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTCGACACTTTGAATTTGCTGAGAGGGCTTACAGGTCACAGGCTCT  631

seq1  CCAGACACCCCGCTGCTGACTCTGCAAGGGGCTTTTTAAGATGGTGCAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACACCCCGCTGCTGACTCTGCAAGGGGCTTTTTAAGATGGTGCAGC  681

seq1  ATGGCAGCCCCGTCAAGAGCTGAGAAAGGGGTTTGCTGACATCTCTCTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGCCCCGTCAAGAGCTGAGAAAGGGGTTTGCTGACATCTCTCTTC  731

seq1  CCTCTGACTGTACCGCTGTTGCTGTCTTTCCTGTTCCCCTTCTTTTTCTC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGACTGTACCGCTGTTGCTGTCTTTCCTGTTCCCCTTCTTTTTCTC  781

seq1  ATCTGTAAGACGTCCCTTACTGGAAGAACAGATTCTCTGAGCCTCTCATC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTAAGACGTCCCTTACTGGAAGAACAGATTCTCTGAGCCTCTCATC  831

seq1  TCTAGCCACAGTTCCCACGGTCTGTGCTTGGCACGCCCGCCCTCTGGGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCACAGTTCCCACGGTCTGTGCTTGGCACGCCCGCCCTCTGGGAG  881

seq1  TGGGGCATTCCCCAACTGATGCAGCCCCTAGGGACACATTCTGGACTTGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGCATTCCCCAACTGATGCAGCCCCTAGGGACACATTCTGGACTTGC  931

seq1  TTTTTTAAATTCTCTTATTTTTGCCTTGGTTTAAAAATCCGGAGATACCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTAAATTCTCTTATTTTTGCCTTGGTTTAAAAATCCGGAGATACCT  981

seq1  GCCTCTTCTAAAAGCTGTTACCTTATTTTGTCTAGTTTATTTCCTGAGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTTCTAAAAGCTGTTACCTTATTTTGTCTAGTTTATTTCCTGAGAC  1031

seq1  CGGAGCAGACCCTGCCTGTGTGTCCTGCTTCTGCGGTCTCTGTTCTTTTT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGAGCAGACCCTGCCTGTGTGTCCTGCTTCTGCGGTCTCTGTTCTTTTT  1081

seq1  TAGCTTTTTCTTTGTTTTTTATGTGCATTTGTGCTTTGCCTTTGTGAATT  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTTTTTCTTTGTTTTTTATGTGCATTTGTGCTTTGCCTTTGTGAATT  1131

seq1  C  1149
      |
seq2  C  1132

seq1: chr9_77736428_77737041
seq2: B6Ng01-116H01.g_68_681

seq1  GAATTCTTGAGATAAGAGAAACAGTTGTCCCAGATGATTGTCCTGGTGTG  50
      ||||||||||  ||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGATTTAAGAGAAACAGTTGTCCCAGATGATTGTCCTGGTGTG  50

seq1  ACCATTAAGCCTTCTGGAGGTATATGATGTGTGTCAAGGGAGCCATAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTAAGCCTTCTGGAGGTATATGATGTGTGTCAAGGGAGCCATAGCA  100

seq1  AGGAGAGAGAAAGGGGGACAGAGGAGGCCTCTTTTTCTTTCTTGTTGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAGAGAAAGGGGGACAGAGGAGGCCTCTTTTTCTTTCTTGTTGTTA  150

seq1  CATAATTACAAGCACATTAATATAGAAACACAACCTGCTGAGACCATTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATTACAAGCACATTAATATAGAAACACAACCTGCTGAGACCATTTA  200

seq1  GTGCTGCTTGCATGTATATGTTTTCAGGGCTGACCACAAAGCCATTAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGCTTGCATGTATATGTTTTCAGGGCTGACCACAAAGCCATTAGGA  250

seq1  AGCTCATTCCTAGAGAAGACTTTCTCCTTTTCATCAAGGTCATGAATTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCATTCCTAGAGAAGACTTTCTCCTTTTCATCAAGGTCATGAATTGC  300

seq1  CCATAGCTCTTCCTGTAGAAATGGGGCTCAGTGAGACCTCTCCCCTCCGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGCTCTTCCTGTAGAAATGGGGCTCAGTGAGACCTCTCCCCTCCGT  350

seq1  GGTAGCATGTCTATTGGTATTATCATTGCCTAGCATTGTTTAGGCAGCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGCATGTCTATTGGTATTATCATTGCCTAGCATTGTTTAGGCAGCCA  400

seq1  TATTGTTAGGAATCCATAGCTGTAGCTTCTACTTCTGTGACATGTCTAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTAGGAATCCATAGCTGTAGCTTCTACTTCTGTGACATGTCTAGG  450

seq1  AAACACATCTCAGCAGGCTTTGTAATCCTAGCCCTTACAATACCTCTGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACATCTCAGCAGGCTTTGTAATCCTAGCCCTTACAATACCTCTGTT  500

seq1  CCTCTCTTATGCAGTGCACCCTGAACCTTGATATAAGGGGTGTGCTGTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTATGCAGTGCACCCTGAACCTTGATATAAGGGGTGTGCTGTAG  550

seq1  ATCTGTCAAGTGAAACGGAACAACCCATGGCCAGTCGTTTTCTGGGTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCAAGTGAAACGGAACAACCCATGGCCAGTCGTTTTCTGGGTTTT  600

seq1  GACCACTAGTTCTC  614
      ||||||||||||||
seq2  GACCACTAGTTCTC  614