BAC Information

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BAC

Clone NameB6Ng01-116K20
Chromosome9 (Build37)
Map Location 59,953,958 - 60,072,221
singlet/doubletdoublet
Overlap geneThsd4
Upstream geneEG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-116K20.bB6Ng01-116K20.g
ACCDH921615DH921616
length9581,109
definitionDH921615|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K20, 5' end.DH921616|Mus musculus domesticus DNA, BAC clone: B6Ng01-116K20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,071,536 - 60,072,221)(59,953,958 - 59,955,073)
sequence
gaattcaagtcctttctgcattagagagctagctgggagatttacatctt
attttctccctagctgcccctgttggcttcatagttaatgagtccagatg
aaagaggactcattatttcaaatctgggtgacacgcatttcaattcaaga
cctgtgtttgcccagactgtgacccgagtcacccccacagaactgaaacc
tccacagtggttttgtctgctgtctgccctgtgagggaggttcagcccca
ggttgtttgcctgagcttggttcttatttccaaaccttcccagcatcagt
tagagaggagagagacctgaactggcctaggtcaattcatatgagtttta
aagatatcttctttttatgtgtatttgtgttttgcctgcatgtatatctg
tatactatgcgcgtttctgctgtcagctctcctggaactggggcctaaga
acttaagttcagtactctgcaagggcagccagtactcttaaccactgagt
catctcttcaattcccttacatgggtttttaaataagagcaaagagtggg
acaggaagatacctcaatgggtaaagatacttgctgtgcaagcatgaaga
cccaaatgttttttaaaaaaactcaagctataacggcatgcttgtggaga
cagatgaatgcctggggctgcctcgccagccaggccactgatccctgaga
tacaggtaaatatgaaaggccctgtcacaacaaaataagattcagggggc
tggggagatggcttggcctgtaaagtgcctgctccatacgttctgagttc
tgttctttagcactcctgtcaacagccaggcctggtggcacttgcctctc
ctttcagtgctgggaggcagaggcaagagctccctagagcttgttggcaa
gctcactttattccaactggtgagccccaggctccgtgagagactctgtc
tcagaact
gaattctgagtccgggtggcatcaaggacagcctctgacaggaagcacac
tcaggaatctcagaaatttgatgctacaatttcaaaataatctaaatagt
ctttgggtctacccagagacacaagattaaaagcacaatattgttggaac
aataagaaaagaaacaacttcaaagctcaactttcaacaaagaattcaag
ctgaaagcagaaagtgaaatctagttaaatattttggtttagcaagagtt
ctttgcctcacccagccctgttccctaaagcttgtggcttcaatattcct
tggcttctttccttagtccccacctccaacccctggctgtagcttctaaa
taatagcattccaaagctggagggccagggtcactctgggatctaacaat
gcaccagtaactctttctattattggggaggggttctgcttgcccctcaa
cacagcaatgcacgccccccataggaaacctacataattccaattccacc
aagcagaaggggaaacgaaagtttgatcgctgacagcttggccaaattga
gtctgaagcacttcatccaaacaactatcagtctagaacgtaaccccaag
ggaccttagcattcaaagaattgcccaaagtggagcaatctggaggaacc
agacatagctaaatatctcagcggtctccatggagccagccctagtttga
catgacagacaatctcaactactcaccctttattcactacagaactctta
gccaatgttctcaccatactgtctagaagatagacacttggatttactgt
gtcggagaaacagatggtctacttctggaatgtgggttaagatgttcgta
tgaaatgagcttttggataatgatttttatgttcgtcctcagagacacca
gagagaaaacctcaatgatgtcacagtgtcgagtacatacccacccccag
caggatggcacagctgttgtttgtggaaggccactctcccctcaaactgt
cagcaaagcaaagtagtacccattccaccatcgccacagaatcggtgatg
tgctgccgatggtggctttataagggggggacgagtacttagaaacacaa
gcttgggaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60071536_60072221
seq2: B6Ng01-116K20.b_44_729 (reverse)

seq1  GGCCTGGCTGGCGAGGCAGCCCCAGGCATTCATCTGTCTCCACAAGCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGGCTGGCGAGGCAGCCCCAGGCATTCATCTGTCTCCACAAGCATG  50

seq1  CCGTTATAGCTTGAGTTTTTTTAAAAAACATTTGGGTCTTCATGCTTGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTATAGCTTGAGTTTTTTTAAAAAACATTTGGGTCTTCATGCTTGCA  100

seq1  CAGCAAGTATCTTTACCCATTGAGGTATCTTCCTGTCCCACTCTTTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTATCTTTACCCATTGAGGTATCTTCCTGTCCCACTCTTTGCTC  150

seq1  TTATTTAAAAACCCATGTAAGGGAATTGAAGAGATGACTCAGTGGTTAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTAAAAACCCATGTAAGGGAATTGAAGAGATGACTCAGTGGTTAAG  200

seq1  AGTACTGGCTGCCCTTGCAGAGTACTGAACTTAAGTTCTTAGGCCCCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTGGCTGCCCTTGCAGAGTACTGAACTTAAGTTCTTAGGCCCCAGT  250

seq1  TCCAGGAGAGCTGACAGCAGAAACGCGCATAGTATACAGATATACATGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGAGCTGACAGCAGAAACGCGCATAGTATACAGATATACATGCA  300

seq1  GGCAAAACACAAATACACATAAAAAGAAGATATCTTTAAAACTCATATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACACAAATACACATAAAAAGAAGATATCTTTAAAACTCATATGA  350

seq1  ATTGACCTAGGCCAGTTCAGGTCTCTCTCCTCTCTAACTGATGCTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACCTAGGCCAGTTCAGGTCTCTCTCCTCTCTAACTGATGCTGGGAA  400

seq1  GGTTTGGAAATAAGAACCAAGCTCAGGCAAACAACCTGGGGCTGAACCTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGGAAATAAGAACCAAGCTCAGGCAAACAACCTGGGGCTGAACCTC  450

seq1  CCTCACAGGGCAGACAGCAGACAAAACCACTGTGGAGGTTTCAGTTCTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGGGCAGACAGCAGACAAAACCACTGTGGAGGTTTCAGTTCTGT  500

seq1  GGGGGTGACTCGGGTCACAGTCTGGGCAAACACAGGTCTTGAATTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGGTGACTCGGGTCACAGTCTGGGCAAACACAGGTCTTGAATTGAAAT  550

seq1  GCGTGTCACCCAGATTTGAAATAATGAGTCCTCTTTCATCTGGACTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTGTCACCCAGATTTGAAATAATGAGTCCTCTTTCATCTGGACTCATT  600

seq1  AACTATGAAGCCAACAGGGGCAGCTAGGGAGAAAATAAGATGTAAATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATGAAGCCAACAGGGGCAGCTAGGGAGAAAATAAGATGTAAATCTC  650

seq1  CCAGCTAGCTCTCTAATGCAGAAAGGACTTGAATTC  686
      ||||||||||||||||||||||||||||||||||||
seq2  CCAGCTAGCTCTCTAATGCAGAAAGGACTTGAATTC  686

seq1: chr9_59953958_59955073
seq2: B6Ng01-116K20.g_67_1175

seq1  GAATTCTGAGTCCGGGTGGCATCAAGGACAGCCTCTGACAGGAAGCACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTCCGGGTGGCATCAAGGACAGCCTCTGACAGGAAGCACAC  50

seq1  TCAGGAATCTCAGAAATTTGATGCTACAATTTCAAAATAATCTAAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAATCTCAGAAATTTGATGCTACAATTTCAAAATAATCTAAATAGT  100

seq1  CTTTGGGTCTACCCAGAGACACAAGATTAAAAGCACAATATTGTTGGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGGTCTACCCAGAGACACAAGATTAAAAGCACAATATTGTTGGAAC  150

seq1  AATAAGAAAAGAAACAACTTCAAAGCTCAACTTTCAACAAAGAATTCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGAAAAGAAACAACTTCAAAGCTCAACTTTCAACAAAGAATTCAAG  200

seq1  CTGAAAGCAGAAAGTGAAATCTAGTTAAATATTTTGGTTTAGCAAGAGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCAGAAAGTGAAATCTAGTTAAATATTTTGGTTTAGCAAGAGTT  250

seq1  CTTTGCCTCACCCAGCCCTGTTCCCTAAAGCTTGTGGCTTCAATATTCCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGCCTCACCCAGCCCTGTTCCCTAAAGCTTGTGGCTTCAATATTCCT  300

seq1  TGGCTTCTTTCCTTAGTCCCCACCTCCAACCCCTGGCTGTAGCTTCTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTCTTTCCTTAGTCCCCACCTCCAACCCCTGGCTGTAGCTTCTAAA  350

seq1  TAATAGCATTCCAAAGCTGGAGGGCCAGGGTCACTCTGGGATCTAACAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGCATTCCAAAGCTGGAGGGCCAGGGTCACTCTGGGATCTAACAAT  400

seq1  GCACCAGTAACTCTTTCTATTATTGGGGAGGGGTTCTGCTTGCCCCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAGTAACTCTTTCTATTATTGGGGAGGGGTTCTGCTTGCCCCTCAA  450

seq1  CACAGCAATGCACGCCCCCCATAGGAAACCTACATAATTCCAATTCCACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAATGCACGCCCCCCATAGGAAACCTACATAATTCCAATTCCACC  500

seq1  AAGCAGAAGGGGAAACGAAAGTTTGATCGCTGACAGCTTGGCCAAATTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGAAGGGGAAACGAAAGTTTGATCGCTGACAGCTTGGCCAAATTGA  550

seq1  GTCTGAAGCACTTCATCCAAACAACTATCAGTCTAGAACGTAACCCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGAAGCACTTCATCCAAACAACTATCAGTCTAGAACGTAACCCCAAG  600

seq1  GGACCTTAGCATTCAAAGAATTGCCCAAAGTGGAGCAATCTGGAGGAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCTTAGCATTCAAAGAATTGCCCAAAGTGGAGCAATCTGGAGGAACC  650

seq1  AGACATAGCTAAATATCTCAGCGGTCTCCATGGAGCCAGCCCTAGTTTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATAGCTAAATATCTCAGCGGTCTCCATGGAGCCAGCCCTAGTTTGA  700

seq1  CATGACAGACAATCTCAACTACTCACCCTTTATTCACTACAGAACTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACAGACAATCTCAACTACTCACCCTTTATTCACTACAGAACTCTTA  750

seq1  GCCAATGTTCTCACCATACTGTCTAGAAGATAGACACTTGGATTTACTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAATGTTCTCACCATACTGTCTAGAAGATAGACACTTGGATTTACTGT  800

seq1  GTCGGAGAAACAGATGG-CCACTTCTGGAATGTGGGGTAAGATGTTCGTA  849
      ||||||||||||||||| | |||||||||||||||| |||||||||||||
seq2  GTCGGAGAAACAGATGGTCTACTTCTGGAATGTGGGTTAAGATGTTCGTA  850

seq1  TGAAATGAGCTTTTGGATAATGA-TCTTATGTTCGTCCTCAGAGAACACA  898
      ||||||||||||||||||||||| | |||||||||||||||||||   ||
seq2  TGAAATGAGCTTTTGGATAATGATTTTTATGTTCGTCCTCAGAGACACCA  900

seq1  GAGAGAAAAACCTCAATGATGTCACAGTGTCGAGTACATACCCACCCCCA  948
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAG-AAAACCTCAATGATGTCACAGTGTCGAGTACATACCCACCCCCA  949

seq1  GCAGGATGGCACAGCCTGTTGTTTGTGGAAGGCCACTCTCCCCTCAAACT  998
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCAGGATGGCACAG-CTGTTGTTTGTGGAAGGCCACTCTCCCCTCAAACT  998

seq1  AGTCAGCAAAGCAGAAGTAGTACCCATTCCACCCATCGCCACAGACACGG  1048
       |||||||||||| ||||||||||||||||| |||||||||||||  |||
seq2  -GTCAGCAAAGCA-AAGTAGTACCCATTCCA-CCATCGCCACAGAATCGG  1045

seq1  TGATGTGCTGCAGAT-GTGGCTTTAATAAAGGGGGGGGGACGAAGTCATA  1097
      ||||||||||| ||| |||||||| ||||   |||||||||| |||  | 
seq2  TGATGTGCTGCCGATGGTGGCTTT-ATAA---GGGGGGGACG-AGTACTT  1090

seq1  AGAAACACAAGCTTGGGAA  1116
      |||||||||||||||||||
seq2  AGAAACACAAGCTTGGGAA  1109