BAC Information

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BAC

Clone NameB6Ng01-117B01
Chromosome9 (Build37)
Map Location 43,392,617 - 43,531,848
singlet/doubletdoublet
Overlap geneLOC384931
Upstream geneGrik4, Arhgef12, LOC545339, Tmem136, Pou2f3, LOC628726, Oaf, D630033O11Rik, Trim29
Downstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh, Phldb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117B01.bB6Ng01-117B01.g
ACCDH921901DH921902
length5311,133
definitionDH921901|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B01, 5' end.DH921902|Mus musculus domesticus DNA, BAC clone: B6Ng01-117B01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,392,617 - 43,393,153)(43,530,701 - 43,531,848)
sequence
cagggagctccacaggaaggaagctgccccaaaggcatccttcagaactc
aggctgaaggctacaatccctggaagagatcgggggtagactctggtggg
ggtcctagcgctgagatccagtctcttccttccttgtgagtatcaacagt
gatttggggtttgtccctcaccccctttacttttttcattatgtagccca
gccctgagctcctgattcctctgcccatgtcttgtacgtttgggaagcac
agtttatattgctcagcctctggccatcaggggacctgcctgcctttatc
tctatgcccagcactccaaacctactacttttttcccagactctaaccac
agagggcagcctccgcgtccctgaatgcactctctctttccacttctggc
tgcgccgtctgtttatggtgactttccacactagatggatatctgctcct
aacttgacattttaccctctgggaaacgtattctgtatgtgtattcatgt
gtgcatgtggggtgggatgtgtgtgtgtgtg
gaattctggccaagctggtggacgacggagctgagcaaggcagtacccca
gccatcatgagcctgggagaaccagaggggaagagaaagggctaagtctg
agaggaagcaagaacccttggattcttggagatacctggtcgaggcagat
tatggtagggcaggatgggctctgggtataacggccccacccactcctgg
acttatctctcctgcttctgaggtctagggtttgctaaagctccgatttt
ttccagtctgattttgagcaggaagattgttgaccttgcgtaggtggcat
gggttacgatggcgatgaaataattttaagaatgcacaacatgtagaaag
ggaagtgctatgtaagtactagctataataattagtattactcatactat
ttaaaagaccatattatcagccagggagatggctcagtgggtaaaggctc
tttgccttgcaagcctgacaacctgagttcaacccttggaacccacagtg
gaggcagagaatggactccccaaagctgtcttctgatacacacacacctg
ctgtggtacgttcatgcgcacacaaattatatttgaaaaagaaaagagaa
aaccatattatattggcttaaggtggcaaagtctggaggaggagatacag
gaaaggatatgatcaaaatgaattatgtccatgtacaaaattgtcaaaga
atatattttaagcaattttttttaaaaggaaagaagattgcagggtttgt
tgtatacctagaggattcctgtctcagctgtgaccttggcaaagtgatta
cacttttctgagcccattttttcattgacaacgtggagacagtaactgta
atgagaaacagtaacacaccttgcagaacacactgatttttttcctcctg
atggggcatgggcctgggacagtgggaaataaacagccctgactcacaag
gaggtcagttggtacaggaagtccgcaggaagagatcctctacactggac
aggggaattctggaagcaagagcttgctgttctgcctcacaattctcccc
aggctccactcttcactctgcaaaacacaagcttgctgctgggaactcaa
ggtatagtagcagcctgagtgggagatctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_43392617_43393153
seq2: B6Ng01-117B01.b_43_579

seq1  GAATTCCAGGGAGCTCCACAGGAAGGAAGCTGCCCCAAAGGCATCCTTCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGAGCTCCACAGGAAGGAAGCTGCCCCAAAGGCATCCTTCA  50

seq1  GAACTCAGGCTGAAGGCTACAATCCCTGGAAGAGATCGGGGGTAGACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCAGGCTGAAGGCTACAATCCCTGGAAGAGATCGGGGGTAGACTCT  100

seq1  GGTGGGGGTCCTAGCGCTGAGATCCAGTCTCTTCCTTCCTTGTGAGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGGGTCCTAGCGCTGAGATCCAGTCTCTTCCTTCCTTGTGAGTATC  150

seq1  AACAGTGATTTGGGGTTTGTCCCTCACCCCCTTTACTTTTTTCATTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTGATTTGGGGTTTGTCCCTCACCCCCTTTACTTTTTTCATTATGT  200

seq1  AGCCCAGCCCTGAGCTCCTGATTCCTCTGCCCATGTCTTGTACGTTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAGCCCTGAGCTCCTGATTCCTCTGCCCATGTCTTGTACGTTTGGG  250

seq1  AAGCACAGTTTATATTGCTCAGCCTCTGGCCATCAGGGGACCTGCCTGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGTTTATATTGCTCAGCCTCTGGCCATCAGGGGACCTGCCTGCC  300

seq1  TTTATCTCTATGCCCAGCACTCCAAACCTACTACTTTTTTCCCAGACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTCTATGCCCAGCACTCCAAACCTACTACTTTTTTCCCAGACTCT  350

seq1  AACCACAGAGGGCAGCCTCCGCGTCCCTGAATGCACTCTCTCTTTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACAGAGGGCAGCCTCCGCGTCCCTGAATGCACTCTCTCTTTCCACT  400

seq1  TCTGGCTGCGCCGTCTGTTTATGGTGACTTTCCACACTAGATGGATATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTGCGCCGTCTGTTTATGGTGACTTTCCACACTAGATGGATATCT  450

seq1  GCTCCTAACTTGACATTTTACCCTCTGGGAAACGTATTCTGTATGTGTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCCTAACTTGACATTTTACCCTCTGGGAAACGTATTCTGTATGTGTAT  500

seq1  TCATGTGTGCATGTGGGGTGGGATGTGTGTGTGTGTG  537
      |||||||||||||||||||||||||||||||||||||
seq2  TCATGTGTGCATGTGGGGTGGGATGTGTGTGTGTGTG  537

seq1: chr9_43530701_43531848
seq2: B6Ng01-117B01.g_66_1198 (reverse)

seq1  ACTGAGATCTCAC-CTCAGCTGCTACTACTACACTTTGGAGTCCCAGGGC  49
      ||||||||||| | |||||  ||| |||||| || |||   |||||  ||
seq2  ACTGAGATCTCCCACTCAG--GCTGCTACTATACCTTGAGTTCCCA--GC  46

seq1  AGCAGAGCTGGTGGTTTTGGGCAGAGTGGAGGAGTGGGGGCTTGGGGGAG  99
      |||| |||| ||| |||   ||||||| || |||||| | || ||| || 
seq2  AGCA-AGCTTGTGTTTT---GCAGAGT-GAAGAGTGGAGCCTGGGGAGAA  91

seq1  ATGTGAGGCAGAACCAGGCAAGCTTCCTGCTTCCAGGATTCCCCTTGTCC  149
       |||||||||||||   |||||| || ||||||||| ||||||| |||||
seq2  TTGTGAGGCAGAAC--AGCAAGC-TCTTGCTTCCAGAATTCCCC-TGTCC  137

seq1  AGTTGTAAGAGGGTCCTCTTCCTGCGGACTTCCTGTACCAACTGACCTCC  199
      || ||| ||||| | |||||||||||||||||||||||||||||||||||
seq2  AG-TGT-AGAGGAT-CTCTTCCTGCGGACTTCCTGTACCAACTGACCTCC  184

seq1  TTGTGAGTCAGGGCTGTTTATCTCCCACTGTCCCAGGCCAATGCCCCATC  249
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  TTGTGAGTCAGGGCTGTTTATTTCCCACTGTCCCAGGCCCATGCCCCATC  234

seq1  AGGAGGAAAAAAATCAGTGTGTTCTGCAAGGTGTGTTACTGTTTCTCATT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAAAAAAATCAGTGTGTTCTGCAAGGTGTGTTACTGTTTCTCATT  284

seq1  ACAGTTACTGTCTCCACGTTGTCAATGAAAAAATGGGCTCAGAAAAGTGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTACTGTCTCCACGTTGTCAATGAAAAAATGGGCTCAGAAAAGTGT  334

seq1  AATCACTTTGCCAAGGTCACAGCTGAGACAGGAATCCTCTAGGTATACAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTTGCCAAGGTCACAGCTGAGACAGGAATCCTCTAGGTATACAA  384

seq1  CAAACCCTGCAATCTTCTTTCCTTTTAAAAAAAATTGCTTAAAATATATT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCTGCAATCTTCTTTCCTTTTAAAAAAAATTGCTTAAAATATATT  434

seq1  CTTTGACAATTTTGTACATGGACATAATTCATTTTGATCATATCCTTTCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGACAATTTTGTACATGGACATAATTCATTTTGATCATATCCTTTCC  484

seq1  TGTATCTCCTCCTCCAGACTTTGCCACCTTAAGCCAATATAATATGGTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCCTCCTCCAGACTTTGCCACCTTAAGCCAATATAATATGGTTT  534

seq1  TCTCTTTTCTTTTTCAAATATAATTTGTGTGCGCATGAACGTACCACAGC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTTTCTTTTTCAAATATAATTTGTGTGCGCATGAACGTACCACAGC  584

seq1  AGGTGTGTGTGTATCAGAAGACAGCTTTGGGGAGTCCATTCTCTGCCTCC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGTGTGTGTATCAGAAGACAGCTTTGGGGAGTCCATTCTCTGCCTCC  634

seq1  ACTGTGGGTTCCAAGGGTTGAACTCAGGTTGTCAGGCTTGCAAGGCAAAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGGGTTCCAAGGGTTGAACTCAGGTTGTCAGGCTTGCAAGGCAAAG  684

seq1  AGCCTTTACCCACTGAGCCATCTCCCTGGCTGATAATATGGTCTTTTAAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTACCCACTGAGCCATCTCCCTGGCTGATAATATGGTCTTTTAAA  734

seq1  TAGTATGAGTAATACTAATTATTATAGCTAGTACTTACATAGCACTTCCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATGAGTAATACTAATTATTATAGCTAGTACTTACATAGCACTTCCC  784

seq1  TTTCTACATGTTGTGCATTCTTAAAATTATTTCATCGCCATCGTAACCCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACATGTTGTGCATTCTTAAAATTATTTCATCGCCATCGTAACCCA  834

seq1  TGCCACCTACGCAAGGTCAACAATCTTCCTGCTCAAAATCAGACTGGAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCACCTACGCAAGGTCAACAATCTTCCTGCTCAAAATCAGACTGGAAA  884

seq1  AAATCGGAGCTTTAGCAAACCCTAGACCTCAGAAGCAGGAGAGATAAGTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCGGAGCTTTAGCAAACCCTAGACCTCAGAAGCAGGAGAGATAAGTC  934

seq1  CAGGAGTGGGTGGGGCCGTTATACCCAGAGCCCATCCTGCCCTACCATAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAGTGGGTGGGGCCGTTATACCCAGAGCCCATCCTGCCCTACCATAA  984

seq1  TCTGCCTCGACCAGGTATCTCCAAGAATCCAAGGGTTCTTGCTTCCTCTC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCGACCAGGTATCTCCAAGAATCCAAGGGTTCTTGCTTCCTCTC  1034

seq1  AGACTTAGCCCTTTCTCTTCCCCTCTGGTTCTCCCAGGCTCATGATGGCT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGCCCTTTCTCTTCCCCTCTGGTTCTCCCAGGCTCATGATGGCT  1084

seq1  GGGGTACTGCCTTGCTCAGCTCCGTCGTCCACCAGCTTGGCCAGAATTC  1148
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTACTGCCTTGCTCAGCTCCGTCGTCCACCAGCTTGGCCAGAATTC  1133