BAC Information

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BAC

Clone NameB6Ng01-117C11
Chromosome9 (Build37)
Map Location 44,527,581 - 44,687,609
singlet/doubletdoublet
Overlap genePhldb1, Arcn1, 1500035H01Rik, Tmem25, BC021608, Mll1
Upstream genePvrl1, LOC100042548, Thy1, Usp2, Mfrp, Rnf26, LOC100042569, Mcam, Cbl, BC038167, Pdzd3, Nlrx1, Abcg4, Mizf, Tmem24, Dpagt1, H2afx, Hmbs, Vps11, LOC100043172, Hyou1, LOC100043178, Slc37a4, Trappc4, Rps25, Ccdc84, Foxr1, Upk2, Bcl9l, Blr1, Ddx6, LOC667406, LOC100042660, Treh
Downstream geneAtp5l, Ube4a, Cd3g, Cd3d, Cd3e, Eva1, A530065I17Rik, Amica1, Scn2b, Scn4b, Tmprss4, Il10ra, Tmprss13, Fxyd6, Fxyd2, Dscaml1, Cep164, LOC640094, Bace1, Rnf214
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117C11.bB6Ng01-117C11.g
ACCDH921966DH921967
length1391,107
definitionDH921966|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C11, 5' end.DH921967|Mus musculus domesticus DNA, BAC clone: B6Ng01-117C11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(44,687,471 - 44,687,609)(44,527,581 - 44,528,693)
sequence
gaattcagcctttttcagcaaaaaggaaagttgccctgggaagggaagtt
gagttcaggttcagtcaatggctatgcgcatttgttttccattggatgca
gaaagggcagtttgaatcgcaggggaagggggggggggg
gaattcctccttctggctatgccaggtgttccaggctcctgccgaagatg
ctatacggaaagaagccagagcccctagggctctctactacatagccttc
caatttgtccacactcccggcccctacctcttggctacccaatgtggtgc
tacacagcgcccggtgcctcacgccagtctggaataagactggcagggaa
gtctacattccaggacgttgaggcagtttcagctcagggaggctacaagg
gcaaggggcatcccagggcaagggggtattttgacaggacccctcttgag
ctcagaggtctggtcttgggaccctggaccctgagaggctgacactcaaa
gaagcccacccatagcagaaaactgtagcggacaaagccacccactactt
tggcacacccacaggccctcccaggcagacggcaccaacagttctaaagg
ctgatgggtagttgagagtacagggaaggccttccctgccaagccaccaa
tcagaggagctaatcccacagtaatcataactgggataaataatagtcac
ccaagccatccacctaattacaagcacagctgtttcagagaaagccagtc
accccctccccttttggccaaatatttaacagtctaattaatgatgaatt
tgaagggtctagacagattcactcgactctagggtgagagggggcaaggg
ctgtggctctccgcacagaccaaactgggcagcaggtggggaggcagggt
ggattccatccaagcaatgccacacaaggaggctttgggtatctagggac
cctcttccctggcacctacagcctacatacactgccctgcccttccccca
ttcacacccagggggtgtggccatgttgctctgggctataaatagtggtg
ccaggcactggctctgtattaatagagtgggcaggagggcagcggaacag
agagcagaccagctctggcccaattaacttactatttgtactcagggccc
aggcatcgcttcaactctggcacttactgccccagagactggccaggcca
tcttaggtcaggaagcccccactttgctcaaccagccccacaggattcct
tggcacc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_44687471_44687609
seq2: B6Ng01-117C11.b_44_182 (reverse)

seq1  CCCCCCCCCCCCTTCCCCTGCGATTCAAACTGCCCTTTCTGCATCCAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCCCCCTTCCCCTGCGATTCAAACTGCCCTTTCTGCATCCAATG  50

seq1  GAAAACAAATGCGCATAGCCATTGACTGAACCTGAACTCAACTTCCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAATGCGCATAGCCATTGACTGAACCTGAACTCAACTTCCCTTC  100

seq1  CCAGGGCAACTTTCCTTTTTGCTGAAAAAGGCTGAATTC  139
      |||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCAACTTTCCTTTTTGCTGAAAAAGGCTGAATTC  139

seq1: chr9_44527581_44528693
seq2: B6Ng01-117C11.g_65_1171

seq1  GAATTCCTCCTTCTGGCTATGCCAGGTGTTCCAGGCTCCTGCCGAAGATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCCTTCTGGCTATGCCAGGTGTTCCAGGCTCCTGCCGAAGATG  50

seq1  CTATACGGAAAGAAGCCAGAGCCCCTAGGGCTCTCTACTACATAGCCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACGGAAAGAAGCCAGAGCCCCTAGGGCTCTCTACTACATAGCCTTC  100

seq1  CAATTTGTCCACACTCCCGGCCCCTACCTCTTGGCTACCCAATGTGGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTGTCCACACTCCCGGCCCCTACCTCTTGGCTACCCAATGTGGTGC  150

seq1  TACACAGCGCCCGGTGCCTCACGCCAGTCTGGAATAAGACTGGCAGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACAGCGCCCGGTGCCTCACGCCAGTCTGGAATAAGACTGGCAGGGAA  200

seq1  GTCTACATTCCAGGACGTTGAGGCAGTTTCAGCTCAGGGAGGCTACAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATTCCAGGACGTTGAGGCAGTTTCAGCTCAGGGAGGCTACAAGG  250

seq1  GCAAGGGGCATCCCAGGGCAAGGGGGTATTTTGACAGGACCCCTCTTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGGCATCCCAGGGCAAGGGGGTATTTTGACAGGACCCCTCTTGAG  300

seq1  CTCAGAGGTCTGGTCTTGGGACCCTGGACCCTGAGAGGCTGACACTCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGAGGTCTGGTCTTGGGACCCTGGACCCTGAGAGGCTGACACTCAAA  350

seq1  GAAGCCCACCCATAGCAGAAAACTGTAGCGGACAAAGCCACCCACTACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCCCACCCATAGCAGAAAACTGTAGCGGACAAAGCCACCCACTACTT  400

seq1  TGGCACACCCACAGGCCCTCCCAGGCAGACGGCACCAACAGTTCTAAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACACCCACAGGCCCTCCCAGGCAGACGGCACCAACAGTTCTAAAGG  450

seq1  CTGATGGGTAGTTGAGAGTACAGGGAAGGCCTTCCCTGCCAAGCCACCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGGGTAGTTGAGAGTACAGGGAAGGCCTTCCCTGCCAAGCCACCAA  500

seq1  TCAGAGGAGCTAATCCCACAGTAATCATAACTGGGATAAATAATAGTCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGGAGCTAATCCCACAGTAATCATAACTGGGATAAATAATAGTCAC  550

seq1  CCAAGCCATCCACCTAATTACAAGCACAGCTGTTTCAGAGAAAGCCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCATCCACCTAATTACAAGCACAGCTGTTTCAGAGAAAGCCAGTC  600

seq1  ACCCCCTCCCCTTTTGGCCAAATATTTAACAGTCTAATTAATGATGAATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTCCCCTTTTGGCCAAATATTTAACAGTCTAATTAATGATGAATT  650

seq1  TGAAGGGTCTAGACAGATTCACTCGACTCTAGGGTGAGAGGGGGCAAGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGTCTAGACAGATTCACTCGACTCTAGGGTGAGAGGGGGCAAGGG  700

seq1  CTGTGGCTCTCCGCACAGACCAAACTGGGCAGCAGGTGGGGAGGCAGGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGCTCTCCGCACAGACCAAACTGGGCAGCAGGTGGGGAGGCAGGGT  750

seq1  GGATTCCATCCAAGCAATGCCACACAAGGAGGCTTTGGGTATCTAGGGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCATCCAAGCAATGCCACACAAGGAGGCTTTGGGTATCTAGGGAC  800

seq1  CCTCTTCCCTGGCACCTACAGCCTACATACACTGCCCTGCCCTTCCCCCC  850
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CCTCTTCCCTGGCACCTACAGCCTACATACACTGCCCTGCCCTT-CCCCC  849

seq1  ATTCACACCCAGGGGGTGTGGCCATGTTGCTCTGGGCTATAAATAGTGGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACACCCAGGGGGTGTGGCCATGTTGCTCTGGGCTATAAATAGTGGT  899

seq1  GCCAGGCACTGGCTCTGTATTAATAGAGTGGGCAGGAGGGCAGCGGAACA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCACTGGCTCTGTATTAATAGAGTGGGCAGGAGGGCAGCGGAACA  949

seq1  GAGAGCAGACCAGCTCTGGCCCAAATTAACTTACTATTTGTACTCAGGGG  1000
      |||||||||||||||||||||| |||||||||||||||||||||||||| 
seq2  GAGAGCAGACCAGCTCTGGCCC-AATTAACTTACTATTTGTACTCAGGG-  997

seq1  CCCCAGGCATCGCTCCAACTCTGGCACCTACTGCCCCCAGAGACCTGGCC  1050
       ||||||||||||| |||||||||||| ||||| ||||||||| ||||||
seq2  -CCCAGGCATCGCTTCAACTCTGGCACTTACTG-CCCCAGAGA-CTGGCC  1044

seq1  AGCCCATC-TAGGTCAGGAAGCCCCCACTCTGCTCACTCAGCCCCCACAG  1099
      || ||||| |||||||||||||||||||| ||||||  ||| ||||||||
seq2  AGGCCATCTTAGGTCAGGAAGCCCCCACTTTGCTCAACCAG-CCCCACAG  1093

seq1  ATTCCCTGGGCACC  1113
        | ||| ||||||
seq2  GATTCCTTGGCACC  1107