BAC Information

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BAC

Clone NameB6Ng01-117P03
Chromosome9 (Build37)
Map Location 56,038,294 - 56,206,484
singlet/doubletdoublet
Overlap geneC230081A13Rik
Upstream geneUbe2q2, Fbxo22, Nrg4, AI118078, Etfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3
Downstream geneHmg20a, LOC100039535, LOC100039549, LOC640537, Lingo1, Odf3l1, Cspg4, Sh3px3, Imp3, Snupn, Ptpn9, 2700012I20Rik, Sin3a, Man2c1, Neil1, Commd4, 1700041C23Rik, Trcg1, 1700017B05Rik, EG330948
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-117P03.bB6Ng01-117P03.g
ACCDH922553DH922554
length1,112573
definitionDH922553|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P03, 5' end.DH922554|Mus musculus domesticus DNA, BAC clone: B6Ng01-117P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,205,371 - 56,206,484)(56,038,294 - 56,038,872)
sequence
gaattcaatttgatacatcattgccctgcgccaaattgtcttacagacac
tagcagacacatatttcagagattttctgcagagattgtggatacagtat
tagaaattatttttagccactgtgaaaaacagtatggaaaatacactgtg
gatcaatttgataatgcatttattgaaaaaaaatttattgcactcatatt
ccataagtagatgctagaagcatggatatgaataagatttgattcctgcc
cccaaggatatcattgtctactttttaagctttaaaatttggtacagaga
aataagaggctcaaccagcttctaaatgaggtggtttaactcccagctat
gaaaaccagtgaactgcacagacagaccatcagttgttggtgttgatagt
ctatttccttctacctcctcccaccccccaaaaaaccctgggaaataaaa
ttgtagtaaacagtggaattgttcctctagatgattttgtagtggttatt
aaacgtttttgtgaccatttctctagaggccaactacatgcaagcctcat
gctcaacaccagggatttgaaatgtatgaggctgtgcattttattcttta
ggaggccagtactaaaaagaactatatataaaataattgcactgtgctgg
taatagctatggattttattgttgaattctgttccaattgatttctcttg
ctagcagtgacccaagggtgtgcatagagactcaagagttttcttgggag
cagtgataccaagggcaaacaaagaggaaactaaaattatgaagtcaaat
gcgtgggtaatgagagagggccagtcttgccaatcagtattttttatgag
ctccttttttatgttaaacttatgtattaacaatttcagtggcaagggaa
aatatgtatattctagaaagcatggaaacatatcctgtggggccagaggg
ctagagcacatgatgctctttcaggaacacgatgtcatttttctagcacc
cgtgtcagatggctcacaattgtctgtagttctagcttcaggccttcatg
acactttcatgaaagtggccttcatgttatactgttcacagttgtatcat
atttctttgcat
tatagcctactgattccatgagatgttacacacatctctgtgtgtgcaca
caaatataaaaaaaaaaaatcagtggctcagtaaattggtgaagtgctga
gttaaaccaattaaaaatttttgatagaaataacactaaataatagtgag
gttgtgcaagaacaaactgctgggtgagcgtaaacatttgaacacatggg
tgtatgcgcctaaaaagtcccattctaagtctatcttctcaggactgaag
catgctcatgacaaatgcacacatgttcatagcccttttgttcaaaacaa
aacctgggaaagctcagctatttaccagcagcaaaataaaccaacagact
ctatttttgcaattattcttacaataataaaagtaatgaactactgacat
atggaaaatgaaaggattttccaaatattatgcttgagtgaaagaggcca
gacctgaaagactgcatattattgcagaatccattagcaagctactttag
ggagagaaagagtcagctgttgtttctgtagttaagtgtattgggtgcag
ggttggggatgttttggaggtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_56205371_56206484
seq2: B6Ng01-117P03.b_48_1159 (reverse)

seq1  ATGC-AAGAAATATGATACAACTTGTGAACAGGTAT-ACATGAAGGCCAC  48
      |||| ||||||||||||||||| |||||||| |||| |||||||||||||
seq2  ATGCAAAGAAATATGATACAAC-TGTGAACA-GTATAACATGAAGGCCAC  48

seq1  TTTCATGAAAGTGTCATGAAAGGCCTGGAGCTAGAACTACAGACAATTGT  98
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  TTTCATGAAAGTGTCATG-AAGGCCTGAAGCTAGAACTACAGACAATTGT  97

seq1  GAGCCATCTGACACGGGTGCTAG-AAAATGACATCGTGTTCCCTGAAAGA  147
      ||||||||||||||||||||||| |||||||||||||||| |||||||||
seq2  GAGCCATCTGACACGGGTGCTAGAAAAATGACATCGTGTT-CCTGAAAGA  146

seq1  GCATCATGTGCTCTAGCCCTCTTGGCCCCACAGGATATGTTTCCATGCTT  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GCATCATGTGCTCTAGCCCTC-TGGCCCCACAGGATATGTTTCCATGCTT  195

seq1  TCTAGAATATACATATTTTCCCTTGCCACTGAAATTGTTAATACATAAGT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAATATACATATTTTCCCTTGCCACTGAAATTGTTAATACATAAGT  245

seq1  TTAACATAAAAAAGGAGCTCATAAAAAATACTGATTGGCAAGACTGGCCC  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAAAAAAGGAGCTCATAAAAAATACTGATTGGCAAGACTGGCCC  295

seq1  TCTCTCATTACCCACGCATTTGACTTCATAATTTTAGTTTCCTCTTTGTT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATTACCCACGCATTTGACTTCATAATTTTAGTTTCCTCTTTGTT  345

seq1  TGCCCTTGGTATCACTGCTCCCAAGAAAACTCTTGAGTCTCTATGCACAC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTTGGTATCACTGCTCCCAAGAAAACTCTTGAGTCTCTATGCACAC  395

seq1  CCTTGGGTCACTGCTAGCAAGAGAAATCAATTGGAACAGAATTCAACAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGGTCACTGCTAGCAAGAGAAATCAATTGGAACAGAATTCAACAAT  445

seq1  AAAATCCATAGCTATTACCAGCACAGTGCAATTATTTTATATATAGTTCT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCCATAGCTATTACCAGCACAGTGCAATTATTTTATATATAGTTCT  495

seq1  TTTTAGTACTGGCCTCCTAAAGAATAAAATGCACAGCCTCATACATTTCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTACTGGCCTCCTAAAGAATAAAATGCACAGCCTCATACATTTCA  545

seq1  AATCCCTGGTGTTGAGCATGAGGCTTGCATGTAGTTGGCCTCTAGAGAAA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGGTGTTGAGCATGAGGCTTGCATGTAGTTGGCCTCTAGAGAAA  595

seq1  TGGTCACAAAAACGTTTAATAACCACTACAAAATCATCTAGAGGAACAAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCACAAAAACGTTTAATAACCACTACAAAATCATCTAGAGGAACAAT  645

seq1  TCCACTGTTTACTACAATTTTATTTCCCAGGGTTTTTTGGGGGGTGGGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTGTTTACTACAATTTTATTTCCCAGGGTTTTTTGGGGGGTGGGAG  695

seq1  GAGGTAGAAGGAAATAGACTATCAACACCAACAACTGATGGTCTGTCTGT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGAAGGAAATAGACTATCAACACCAACAACTGATGGTCTGTCTGT  745

seq1  GCAGTTCACTGGTTTTCATAGCTGGGAGTTAAACCACCTCATTTAGAAGC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCACTGGTTTTCATAGCTGGGAGTTAAACCACCTCATTTAGAAGC  795

seq1  TGGTTGAGCCTCTTATTTCTCTGTACCAAATTTTAAAGCTTAAAAAGTAG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGAGCCTCTTATTTCTCTGTACCAAATTTTAAAGCTTAAAAAGTAG  845

seq1  ACAATGATATCCTTGGGGGCAGGAATCAAATCTTATTCATATCCATGCTT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATATCCTTGGGGGCAGGAATCAAATCTTATTCATATCCATGCTT  895

seq1  CTAGCATCTACTTATGGAATATGAGTGCAATAAATTTTTTTTCAATAAAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCATCTACTTATGGAATATGAGTGCAATAAATTTTTTTTCAATAAAT  945

seq1  GCATTATCAAATTGATCCACAGTGTATTTTCCATACTGTTTTTCACAGTG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTATCAAATTGATCCACAGTGTATTTTCCATACTGTTTTTCACAGTG  995

seq1  GCTAAAAATAATTTCTAATACTGTATCCACAATCTCTGCAGAAAATCTCT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAAAATAATTTCTAATACTGTATCCACAATCTCTGCAGAAAATCTCT  1045

seq1  GAAATATGTGTCTGCTAGTGTCTGTAAGACAATTTGGCGCAGGGCAATGA  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATATGTGTCTGCTAGTGTCTGTAAGACAATTTGGCGCAGGGCAATGA  1095

seq1  TGTATCAAATTGAATTC  1114
      |||||||||||||||||
seq2  TGTATCAAATTGAATTC  1112

seq1: chr9_56038294_56038872
seq2: B6Ng01-117P03.g_66_644

seq1  GAATTCTATAGCCTACTGATTCCATGAGATGTTACACACATCTCTGTGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGCCTACTGATTCCATGAGATGTTACACACATCTCTGTGTG  50

seq1  TGCACACAAATATAAAAAAAAAAAATCAGTGGCTCAGTAAATTGGTGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACACAAATATAAAAAAAAAAAATCAGTGGCTCAGTAAATTGGTGAAG  100

seq1  TGCTGAGTTAAACCAATTAAAAATTTTTGATAGAAATAACACTAAATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGAGTTAAACCAATTAAAAATTTTTGATAGAAATAACACTAAATAAT  150

seq1  AGTGAGGTTGTGCAAGAACAAACTGCTGGGTGAGCGTAAACATTTGAACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGGTTGTGCAAGAACAAACTGCTGGGTGAGCGTAAACATTTGAACA  200

seq1  CATGGGTGTATGCGCCTAAAAAGTCCCATTCTAAGTCTATCTTCTCAGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGTGTATGCGCCTAAAAAGTCCCATTCTAAGTCTATCTTCTCAGGA  250

seq1  CTGAAGCATGCTCATGACAAATGCACACATGTTCATAGCCCTTTTGTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGCATGCTCATGACAAATGCACACATGTTCATAGCCCTTTTGTTCA  300

seq1  AAACAAAACCTGGGAAAGCTCAGCTATTTACCAGCAGCAAAATAAACCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACCTGGGAAAGCTCAGCTATTTACCAGCAGCAAAATAAACCAA  350

seq1  CAGACTCTATTTTTGCAATTATTCTTACAATAATAAAAGTAATGAACTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTCTATTTTTGCAATTATTCTTACAATAATAAAAGTAATGAACTAC  400

seq1  TGACATATGGAAAATGAAAGGATTTTCCAAATATTATGCTTGAGTGAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATGGAAAATGAAAGGATTTTCCAAATATTATGCTTGAGTGAAAG  450

seq1  AGGCCAGACCTGAAAGACTGCATATTATTGCAGAATCCATTAGCAAGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGACCTGAAAGACTGCATATTATTGCAGAATCCATTAGCAAGCTA  500

seq1  CTTTAGGGAGAGAAAGAGTCAGCTGTTGTTTCTGTAGTTAAGTGTATTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGAGAGAAAGAGTCAGCTGTTGTTTCTGTAGTTAAGTGTATTGG  550

seq1  GTGCAGGGTTGGGGATGTTTTGGAGGTGG  579
      |||||||||||||||||||||||||||||
seq2  GTGCAGGGTTGGGGATGTTTTGGAGGTGG  579