BAC Information

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BAC

Clone NameB6Ng01-118A21
Chromosome9 (Build37)
Map Location 79,856,243 - 79,857,386
singlet/doubletsinglet
Overlap geneLOC666490
Upstream geneLOC436085, LOC235509, LOC666479, Col12a1, Cox7a2, Tmem30a, Filip1, LOC100041218
Downstream geneSenp6, LOC100041249, Myo6, Impg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118A21.bB6Ng01-118A21.g
ACCDH922635DH922636
length1,1381,192
definitionDH922635|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A21, 5' end.DH922636|Mus musculus domesticus DNA, BAC clone: B6Ng01-118A21, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccagggtaggtggccttgtcttgctctatctcctaaggacatcca
gaactattactggggtgtgaaggctggagcctggggtttttcctattagt
aactgacttagtctcctcaactgccaatttgaagtctgtcatggaatcgg
tctagccttctcaataacactgtgagcaacactgggcaacagggcaacat
gaggttctgactctaagcaacaagagctagcaaagtccagatctagtgat
ttgtaaatttctttccactgagcattgggctctgttcttctgtcatttga
aaatcagaaatgaactgtggctttgggggcatgggaactgctgtttccaa
aagtacacagtttccatttgtccatcaagtgaacaaaattccctattatt
ctaacagcatggggtgcttttctgccccactgtccccacagactctgagt
cgtgtgtgtcacccacagctcagttgttcttgtccagttcttcatcacta
ccaaaaccattccatcattggttcccctatccagttcaattgggtaatga
acacactcacatattttctaggtaaatactttaccactgataagttccca
gccttttaaatctttttttgagtcaagatctaatggaaaccactgcagaa
aaccacactgttcaaagtgcatagatttattgattgtgagtgcccagccc
cagcagatacacctacaacagaactcctgtacctaaggctgtagaagagg
gcagcagaaagattgtaagaggcagaggaccaggaattctgctgtgagac
tgtatctcctagactacacacatgctacctcaacaatgccaataccagta
gacatgctaatggaaaggaggaaatctcaaagacctacaaggaagtgatg
actgtgaagaaagagaggattatctcttctgagggatgcgccccctgatt
gcttactcaatatgtagtggtcagcctgaaatcgtacacatgcaagcaac
actaaatggatttgggccggttgcatttatatattgtatgtgcatattca
tatatacatataaagaaaatacgtcatccatttgagaggaatgagaaagt
taggagaaaccatgggaaagaattatttaattaactgt
gaattcaaactggacctggtgcctcgtgcttgtaattctagctactcggg
aagctgcatgttcaagaccagcatggtcagttagtaatatcctgtttcag
agagagatgggctataactaagtccacggtagaatacttgcctagcatgt
gaggccctgggttcaatccatatcaccacaaaaaaatggtaagggaaggg
tcaggcattcagagacgacccaaatgacttgatgaaaaagctaccttcca
ctgaacacatttcaaattcgtaagacagtaagtaaaattagggaaactaa
aaaagaggaaggaaaaccaagaaaggaagtaatttacagcaaccacagaa
atgtagctccaagattgccaaaagaaaaatctcaactatatcaaagattg
taaaataaactaaaaccaggggcagacttatttctcaaattccagtacta
aggtgagagagggggatagagggcaagcagaacccttggctcaccattgg
ctcaccctggccagccattctagcagaaaaggagagctctggactcactg
agaccccactacaaaaaataagaggatgaaagactgaagaagatgcttgt
gttggttaggttttttatctgttttgctttgttttatgtgggtttgtttt
gttttgtttggcaaaacttcatgcaagttagagtcgtctgaaagggaact
ttagtttttaaaaatcccccatcaaattaccctgtaggcaagcttatggg
acattttcttggttgattgataattgatggaattaattaatggaaggacc
cagtacactgtgaaaagtgtcattcctgggcaggtggtcccagggaatat
aagaaagcaaactgaacaagccaggatgaataggccagtaagtaggaatt
ctcctttacctctgcaacagttcctgctttcaggttcctgttttgagttc
tgtgatggaattgagagttgaaataaaccctaaacctggcctttggggtg
gtgttatatcatagtaataaaaagcagactagaacatgcctactataggg
ctctacccaaataattgcagtacgcagaatatgcttttaatgaagaatca
tgtgctgagagaatgtaagcagtatggatcatagtgcctatgagctttat
caggctcaggggaaatctctctagagccttatgctgctgggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_79856243_79857386
seq2: B6Ng01-118A21.b_48_1185

seq1  GAATTCCAGGGTAGGTGGCCTTGTCTTGCTCTATCTCCTAAGGACATCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGGTAGGTGGCCTTGTCTTGCTCTATCTCCTAAGGACATCCA  50

seq1  GAACTATTACTGGGGTGTGAAGGCTGGAGCCTGGGGTTTTTCCTATTAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATTACTGGGGTGTGAAGGCTGGAGCCTGGGGTTTTTCCTATTAGT  100

seq1  AACTGACTTAGTCTCCTCAACTGCCAATTTGAAGTCTGTCATGGAATCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGACTTAGTCTCCTCAACTGCCAATTTGAAGTCTGTCATGGAATCGG  150

seq1  TCTAGCCTTCTCAATAACACTGTGAGCAACACTGGGCAACAGGGCAACAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGCCTTCTCAATAACACTGTGAGCAACACTGGGCAACAGGGCAACAT  200

seq1  GAGGTTCTGACTCTAAGCAACAAGAGCTAGCAAAGTCCAGATCTAGTGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTCTGACTCTAAGCAACAAGAGCTAGCAAAGTCCAGATCTAGTGAT  250

seq1  TTGTAAATTTCTTTCCACTGAGCATTGGGCTCTGTTCTTCTGTCATTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAATTTCTTTCCACTGAGCATTGGGCTCTGTTCTTCTGTCATTTGA  300

seq1  AAATCAGAAATGAACTGTGGCTTTGGGGGCATGGGAACTGCTGTTTCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGAAATGAACTGTGGCTTTGGGGGCATGGGAACTGCTGTTTCCAA  350

seq1  AAGTACACAGTTTCCATTTGTCCATCAAGTGAACAAAATTCCCTATTATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTACACAGTTTCCATTTGTCCATCAAGTGAACAAAATTCCCTATTATT  400

seq1  CTAACAGCATGGGGTGCTTTTCTGCCCCACTGTCCCCACAGACTCTGAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACAGCATGGGGTGCTTTTCTGCCCCACTGTCCCCACAGACTCTGAGT  450

seq1  CGTGTGTGTCACCCACAGCTCAGTTGTTCTTGTCCAGTTCTTCATCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGTGTCACCCACAGCTCAGTTGTTCTTGTCCAGTTCTTCATCACTA  500

seq1  CCAAAACCATTCCATCATTGGTTCCCCTATCCAGTTCAATTGGGTAATGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAACCATTCCATCATTGGTTCCCCTATCCAGTTCAATTGGGTAATGA  550

seq1  ACACACTCACATATTTTCTAGGTAAATACTTTACCACTGATAAGTTCCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTCACATATTTTCTAGGTAAATACTTTACCACTGATAAGTTCCCA  600

seq1  GCCTTTTAAATCTTTTTTTGAGTCAAGATCTAATGGAAACCACTGCAGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTTAAATCTTTTTTTGAGTCAAGATCTAATGGAAACCACTGCAGAA  650

seq1  AACCACACTGTTCAAAGTGCATAGATTTATTGATTGTGAGTGCCCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCACACTGTTCAAAGTGCATAGATTTATTGATTGTGAGTGCCCAGCCC  700

seq1  CAGCAGATACACCTACAACAGAACTCCTGTACCTAAGGCTGTAGAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGATACACCTACAACAGAACTCCTGTACCTAAGGCTGTAGAAGAGG  750

seq1  GCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAATTCTGCTGTGAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGAAAGATTGTAAGAGGCAGAGGACCAGGAATTCTGCTGTGAGAC  800

seq1  TGTATCTCCTAGACTACACACATGCTACCTCAACAATGCCAATACCAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATCTCCTAGACTACACACATGCTACCTCAACAATGCCAATACCAGTA  850

seq1  GACATGCTAATGG-AAGGAGGAAATCTCAAAGACCTACAAGGAAGTGATG  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GACATGCTAATGGAAAGGAGGAAATCTCAAAGACCTACAAGGAAGTGATG  900

seq1  ACTGTGAAGAAAGAGAGGATTATCTCTTCTGAGGGATGCGCCCCCTGATT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTGAAGAAAGAGAGGATTATCTCTTCTGAGGGATGCGCCCCCTGATT  950

seq1  GCTTACTCAATATGTAGTGGTCAGCCTGAAATCGTACACATGCAAGCAAC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTCAATATGTAGTGGTCAGCCTGAAATCGTACACATGCAAGCAAC  1000

seq1  ACTAAATGGATTT-GGCCGGTTGCATTTATATA-TGTATGTGCATATTCA  1047
      ||||||||||||| ||||||||||||||||||| ||||||||||||||||
seq2  ACTAAATGGATTTGGGCCGGTTGCATTTATATATTGTATGTGCATATTCA  1050

seq1  TATATAACAATAATAAAGAAAATAAGGTCATCCATTTGAGAGGGAATGAG  1097
      ||||| |||   ||||||||||| | ||||||||||||||| ||||||||
seq2  TATAT-ACA--TATAAAGAAAAT-ACGTCATCCATTTGAGA-GGAATGAG  1095

seq1  AAAGTTAGGGAAGGAAAACAAAGGGGAGAGATTATTTAATTAACTGT  1144
      |||||||||  ||  |||| | ||| |   |||||||||||||||||
seq2  AAAGTTAGG--AG--AAACCATGGGAAAGAATTATTTAATTAACTGT  1138