BAC Information

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BAC

Clone NameB6Ng01-118B13
Chromosome9 (Build37)
Map Location 48,759,381 - 48,880,326
singlet/doubletdoublet
Overlap geneHtr3b, Usp28, LOC100042785, Zw10
Upstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a
Downstream geneEG629400, Tmprss5, EG235327, Drd2, Ankk1, Ttc12, Ncam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118B13.bB6Ng01-118B13.g
ACCDH922666DH922667
length1,0171,095
definitionDH922666|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B13, 5' end.DH922667|Mus musculus domesticus DNA, BAC clone: B6Ng01-118B13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,759,381 - 48,760,397)(48,879,209 - 48,880,326)
sequence
gaattcattagtcttcctaacagagggagtctatttagatctaaattggt
ggttagcaaatatacagataattccctcacattcttatttatctttccta
gttccggagactatggaaacagatgcctcaacgtctggctgggaggctcc
agtcaatggactggaatacaaaggtatccgggattcggaattgacaaaac
tcaatagaaacaaattggaactcttcactgttgagtagattatctctata
atcagatttccctaaggtactcataatactcagaaattcgaagacaagac
tgtaggcttttccataaacaaaacaggaggcaaaacatgagaagggagga
aaggagccatggtgggagctgggctgcgagttcttcattcagacacaaag
ttgccagcagtacagctgctggcagaggcatccgacaagttcgctgctca
caaagggagtatgctagtctggacagaatctctaagtgatttttatcaga
tccttcagaactgtttgctgtgtggctgcaactaacgtcatctaaactag
ctgcaactagctcatcaaaatataatagtgacatttataaagtgtctctg
gagtgacctaatcatcaatagagataatcttagaattagtgtttttttaa
ttcactagctattttacagtattgatctagcatcttagaagtaaaatatg
ttacaatgcatgtgctaggaaataataaaagcaacaaagtctttccatca
gaaaccttataacaacctgggcagtggtggctcacacctttaatcccaac
acttgggaggcagaggcagctgctggatctctgagttccaggccagccta
gtctacagagcaagttcctgaacagccaaagctacacagaaaaaccctgt
cccaaatatatatatatatatatatatatatatcacacatatatatacac
acacatatatatacatatacctatatatgtgtgtatatatatgtgtgtat
atatatatgtatatata
gaattcactgcttcaattcttccacacaaattagtgtctacccagttgag
gatgtaaccctaagagaaggtctgagcaggtctggccaccgcagatgcgt
atgcgtgactgcttggccgtggggagtggcagtcaatttcttctccagca
ccatgtctgccctgaatgccaccatgtttctctccatgacaataaatgtc
tgaaactgtaagccagtcccaattaaatgttgtcctttatgagagttgcc
atggtcacggcgtctcttcacagcaatggaatcactggacgaggaccttt
ctatttcctaacccagaaaggtacattggctctgaaaatgtctggacatt
aaaaactggacacagttcttttgagcttctaagtgtatgctatcttccta
cacacaaaaatcactatacattcacagtaatgtctacagcctttaaaagg
gctaaatttggcgtactaactgaatgttaatcactgtctttggtgaaaat
ataaagttactggttttaacctgacttaataacttcaaggtccaactaca
cagaaaagagatactcacttgtggtatgttggtaccacatcatggaacaa
atggaagatattcctcactgagtagaagagctggacagcactggaaggaa
aataaacacagaatgaaatacagaatgaagcgggtagtctattagtgaag
gtcatgtgataaaaaccacagctcagaaaccacacgccttggtcactgca
ggaaagcaccgtggacctcggtggagacacacccaaccggtacctctaac
ctgaacttctcttctagaacctggatacattaacaaccttcagaacacaa
acaccccaaagcctcttccccatccgtgctctgccagcacccaaagtatc
cttccagtgacagacagagttaagcctcagcaatgtcatccatttcccga
gcattgtgcaaagggcatcacagagctcttccgggctttcggtcagcgac
ttcagctttccccttcccttcttcccacgcaaggacgagcacacttctga
aaatagaatcgacctcagatcctctgcccttaactgagctttaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_48759381_48760397
seq2: B6Ng01-118B13.b_48_1064

seq1  GAATTCATTAGTCTTCCTAACAGAGGGAGTCTATTTAGATCTAAATTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGTCTTCCTAACAGAGGGAGTCTATTTAGATCTAAATTGGT  50

seq1  GGTTAGCAAATATACAGATAATTCCCTCACATTCTTATTTATCTTTCCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGCAAATATACAGATAATTCCCTCACATTCTTATTTATCTTTCCTA  100

seq1  GTTCCGGAGACTATGGAAACAGATGCCTCAACGTCTGGCTGGGAGGCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGGAGACTATGGAAACAGATGCCTCAACGTCTGGCTGGGAGGCTCC  150

seq1  AGTCAATGGACTGGAATACAAAGGTATCCGGGATTCGGAATTGACAAAAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAATGGACTGGAATACAAAGGTATCCGGGATTCGGAATTGACAAAAC  200

seq1  TCAATAGAAACAAATTGGAACTCTTCACTGTTGAGTAGATTATCTCTATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAGAAACAAATTGGAACTCTTCACTGTTGAGTAGATTATCTCTATA  250

seq1  ATCAGATTTCCCTAAGGTACTCATAATACTCAGAAATTCGAAGACAAGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGATTTCCCTAAGGTACTCATAATACTCAGAAATTCGAAGACAAGAC  300

seq1  TGTAGGCTTTTCCATAAACAAAACAGGAGGCAAAACATGAGAAGGGAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGCTTTTCCATAAACAAAACAGGAGGCAAAACATGAGAAGGGAGGA  350

seq1  AAGGAGCCATGGTGGGAGCTGGGCTGCGAGTTCTTCATTCAGACACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGCCATGGTGGGAGCTGGGCTGCGAGTTCTTCATTCAGACACAAAG  400

seq1  TTGCCAGCAGTACAGCTGCTGGCAGAGGCATCCGACAAGTTCGCTGCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCAGCAGTACAGCTGCTGGCAGAGGCATCCGACAAGTTCGCTGCTCA  450

seq1  CAAAGGGAGTATGCTAGTCTGGACAGAATCTCTAAGTGATTTTTATCAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGGAGTATGCTAGTCTGGACAGAATCTCTAAGTGATTTTTATCAGA  500

seq1  TCCTTCAGAACTGTTTGCTGTGTGGCTGCAACTAACGTCATCTAAACTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCAGAACTGTTTGCTGTGTGGCTGCAACTAACGTCATCTAAACTAG  550

seq1  CTGCAACTAGCTCATCAAAATATAATAGTGACATTTATAAAGTGTCTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAACTAGCTCATCAAAATATAATAGTGACATTTATAAAGTGTCTCTG  600

seq1  GAGTGACCTAATCATCAATAGAGATAATCTTAGAATTAGTGTTTTTTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACCTAATCATCAATAGAGATAATCTTAGAATTAGTGTTTTTTTAA  650

seq1  TTCACTAGCTATTTTACAGTATTGATCTAGCATCTTAGAAGTAAAATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTAGCTATTTTACAGTATTGATCTAGCATCTTAGAAGTAAAATATG  700

seq1  TTACAATGCATGTGCTAGGAAATAATAAAAGCAACAAAGTCTTTCCATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAATGCATGTGCTAGGAAATAATAAAAGCAACAAAGTCTTTCCATCA  750

seq1  GAAACCTTATAACAACCTGGGCAGTGGTGGCTCACACCTTTAATCCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTTATAACAACCTGGGCAGTGGTGGCTCACACCTTTAATCCCAAC  800

seq1  ACTTGGGAGGCAGAGGCAGCTGCTGGATCTCTGAGTTCCAGGCCAGCCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGGAGGCAGAGGCAGCTGCTGGATCTCTGAGTTCCAGGCCAGCCTA  850

seq1  GTCTACAGAGCAAGTTCCTGAACAGCCAAAGCTACACAGAAAAACCCTGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACAGAGCAAGTTCCTGAACAGCCAAAGCTACACAGAAAAACCCTGT  900

seq1  CCCAAATATATATATATATATATATATATATATCACACATATATATACAC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAATATATATATATATATATATATATATATCACACATATATATACAC  950

seq1  ACACATATATATACATATACCTATATATGTGTGTATATATATGTGTGTAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATATATATACATATACCTATATATGTGTGTATATATATGTGTGTAT  1000

seq1  ATATATATGTATATATA  1017
      |||||||||||||||||
seq2  ATATATATGTATATATA  1017

seq1: chr9_48879209_48880326
seq2: B6Ng01-118B13.g_68_1162 (reverse)

seq1  GTTAAAGCTCAGGTTTAAAGGGCAGAGGATCTTGAGGGTTCGATTCTATT  50
      ||||||||||||   | |||||||||||||| |||||  |||||||||||
seq2  GTTAAAGCTCAG---TTAAGGGCAGAGGATC-TGAGG--TCGATTCTATT  44

seq1  CTCAGAAGTGTTGCTTCGTCCCTTTGCGTTGGGGAAGAAGGGGAAGGGGA  100
       ||||||||| ||| ||||||  ||||||  |||||||| ||||||||||
seq2  TTCAGAAGTG-TGC-TCGTCC--TTGCGT--GGGAAGAA-GGGAAGGGGA  87

seq1  AAGCTGAAGGTCCGCCTGACCCGGAAAGCCCGGGAGAGCCTCTGTTGATG  150
      |||||||| |||   ||||||  |||||||||| |||| ||||| |||||
seq2  AAGCTGAA-GTC--GCTGACC--GAAAGCCCGGAAGAG-CTCTG-TGATG  130

seq1  CCCTTTGCACAATGCTTCGGGAAATGGATGACATTTGCTTGAGGCTTAAC  200
      ||||||||||||||| ||||||||||||||||| |||| |||||||||||
seq2  CCCTTTGCACAATGC-TCGGGAAATGGATGACA-TTGC-TGAGGCTTAAC  177

seq1  TCTGTCTGTCACTGGAAGGATACTTTGGGTGCTGGCAGAGCACGGATGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTGTCACTGGAAGGATACTTTGGGTGCTGGCAGAGCACGGATGGG  227

seq1  GAAGAGGCTTTGGGGTGTTTGTGTTCTGAAGGTTGTTAATGTATCCAGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGCTTTGGGGTGTTTGTGTTCTGAAGGTTGTTAATGTATCCAGGT  277

seq1  TCTAGAAGAGAAGTTCAGGTTAGAGGTACCGGTTGGGTGTGTCTCCACCG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAGAGAAGTTCAGGTTAGAGGTACCGGTTGGGTGTGTCTCCACCG  327

seq1  AGGTCCACGGTGCTTTCCTGCAGTGACCAAGGCGTGTGGTTTCTGAGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCACGGTGCTTTCCTGCAGTGACCAAGGCGTGTGGTTTCTGAGCTG  377

seq1  TGGTTTTTATCACATGACCTTCACTAATAGACTACCCGCTTCATTCTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTATCACATGACCTTCACTAATAGACTACCCGCTTCATTCTGTA  427

seq1  TTTCATTCTGTGTTTATTTTCCTTCCAGTGCTGTCCAGCTCTTCTACTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTGTGTTTATTTTCCTTCCAGTGCTGTCCAGCTCTTCTACTCA  477

seq1  GTGAGGAATATCTTCCATTTGTTCCATGATGTGGTACCAACATACCACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAATATCTTCCATTTGTTCCATGATGTGGTACCAACATACCACAA  527

seq1  GTGAGTATCTCTTTTCTGTGTAGTTGGACCTTGAAGTTATTAAGTCAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTATCTCTTTTCTGTGTAGTTGGACCTTGAAGTTATTAAGTCAGGT  577

seq1  TAAAACCAGTAACTTTATATTTTCACCAAAGACAGTGATTAACATTCAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCAGTAACTTTATATTTTCACCAAAGACAGTGATTAACATTCAGT  627

seq1  TAGTACGCCAAATTTAGCCCTTTTAAAGGCTGTAGACATTACTGTGAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTACGCCAAATTTAGCCCTTTTAAAGGCTGTAGACATTACTGTGAATG  677

seq1  TATAGTGATTTTTGTGTGTAGGAAGATAGCATACACTTAGAAGCTCAAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGATTTTTGTGTGTAGGAAGATAGCATACACTTAGAAGCTCAAAA  727

seq1  GAACTGTGTCCAGTTTTTAATGTCCAGACATTTTCAGAGCCAATGTACCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTGTGTCCAGTTTTTAATGTCCAGACATTTTCAGAGCCAATGTACCT  777

seq1  TTCTGGGTTAGGAAATAGAAAGGTCCTCGTCCAGTGATTCCATTGCTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGGTTAGGAAATAGAAAGGTCCTCGTCCAGTGATTCCATTGCTGTG  827

seq1  AAGAGACGCCGTGACCATGGCAACTCTCATAAAGGACAACATTTAATTGG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGACGCCGTGACCATGGCAACTCTCATAAAGGACAACATTTAATTGG  877

seq1  GACTGGCTTACAGTTTCAGACATTTATTGTCATGGAGAGAAACATGGTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGGCTTACAGTTTCAGACATTTATTGTCATGGAGAGAAACATGGTGG  927

seq1  CATTCAGGGCAGACATGGTGCTGGAGAAGAAATTGACTGCCACTCCCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAGGGCAGACATGGTGCTGGAGAAGAAATTGACTGCCACTCCCCAC  977

seq1  GGCCAAGCAGTCACGCATACGCATCTGCGGTGGCCAGACCTGCTCAGACC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCAAGCAGTCACGCATACGCATCTGCGGTGGCCAGACCTGCTCAGACC  1027

seq1  TTCTCTTAGGGTTACATCCTCAACTGGGTAGACACTAATTTGTGTGGAAG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTAGGGTTACATCCTCAACTGGGTAGACACTAATTTGTGTGGAAG  1077

seq1  AATTGAAGCAGTGAATTC  1118
      ||||||||||||||||||
seq2  AATTGAAGCAGTGAATTC  1095