BAC Information

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BAC

Clone NameB6Ng01-118D17
Chromosome9 (Build37)
Map Location 111,615,560 - 111,729,371
singlet/doubletdoublet
Overlap genenone
Upstream genePthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615, Stac
Downstream gene4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118D17.bB6Ng01-118D17.g
ACCDH922766DH922767
length4951,124
definitionDH922766|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D17, 5' end.DH922767|Mus musculus domesticus DNA, BAC clone: B6Ng01-118D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(111,615,560 - 111,616,062)(111,728,697 - 111,729,371)
sequence
agaaatagaatcaaaatataaaccagggaagttcaagcctcaaaaagttc
tctctctctttctctctctctctctctctctctctctctctctctctctc
tctctctctctctttctctctctctctttctctctctcttcctccctcct
tctctctctctccatccctccatccatatctcattatctctgtcaggcac
acacatgggcacacacacacacaatatttataaaatatgcctgattcttt
ttatagatagttagtgatgggtatacatgtgtctggtgggtatgtttgtg
taagtaagagcacgtttatgttcaagtatgtgtgagaaggtgaaagaaaa
ctttgggggtgggtttttatcttttgttaaaaatgtttgacacggaatat
gctaggttagctggccatgatagagttggaatctcctgttatgcctccca
acttcttgaagaagagggtgttgttataagtatatgctaccatat
gaattctttacttaactctgtatcccatttttttttataaggttatttgg
ttctctggagtctaacttcttgagttagttctcaacaacactggagaagc
tagaatgatattgtggtaactttgaataagaatggcttcacagctcatct
ctttgaatgcttagtccctcattggtggaactatttaggaagaattggag
gtgttaccttgtaggagatgtgttgctaggggtggaattgaggtttcaaa
aacccatgtcattcttggttctccctctgcctcatgcttgtgggtcagga
tgtagctctaagctactgctccagaaccatgcctgcctgtctgctaccat
gctctctgccatgatggtcagggactctaaccctctggaacactgagcca
atattataagttgtcttggtcatggtatctcttcacatcaacacaaaagt
acctaagtcaatatgtaggtttatagattgaaattgtacactctagtaca
aactaaagcttggctatataccagtgcagatagtcatgtatacttacaga
taccagcactctgtgatttcttatgtacacatgggtgtttccacactctg
gctgctcaaataacctaggaatagcaccaagctgggaaccagaagcactc
atgtacctgaaatcccagtgacaaggagacgtgccagtgctgggagaaac
acccacttcttaaattggagcagaaaatacacagaggagaccaggacata
ttatagtatcttagagaattaagttcttttaaaataactgctgttctctt
taaaaaacaaaaagcaggcatggatgctcaaattcaatagttgtaaacaa
ggcagaacctatctcaaaatgtgtaagttaacttttaaatccttgtattc
acaacacattggaaactcatatcccacagcattagtcaaagcaaagtgtt
tgtgactatttaacccagtcatgtggtatataagggtcccgtctctaagg
gccacatacaaactgggcacccatggcctgtactgcctttgctgaataag
ctcagtatcatgtgcaaatgaatccataaggatgtgcttttcgaaccgga
tccatgtatgctaagcaccataga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_111615560_111616062
seq2: B6Ng01-118D17.b_49_549

seq1  GAATTCAGAAATAGAATCAAAATATAAACCAGGGAAGTTCAAGCCTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATAGAATCAAAATATAAACCAGGGAAGTTCAAGCCTCAAA  50

seq1  AAGTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCTCTCTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC  100

seq1  TCTCTCTCTCTCCCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTCTTCCTC  150
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTTTCTCTCTCTCTTCCTC  150

seq1  CCTCCTTCTCTCTCTCTCCCTCCCTCCCTCCTTCTCTCTTTCTCTCTCTC  200
      ||||||||||||||||||| ||||||| ||| | |||| || ||||| ||
seq2  CCTCCTTCTCTCTCTCTCCATCCCTCCATCCATATCTCATTATCTCTGTC  200

seq1  ATGCACACACATGGGCACACACACACACAATATTTATAAAATTTGCCTGA  250
      | |||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGGCACACACATGGGCACACACACACACAATATTTATAAAATATGCCTGA  250

seq1  TTCTTTTTATTGTATGTAAGTGTTGGGTATGCATGTGTCTGGTGGGTATG  300
      |||||||||| |   || |||| ||||||| |||||||||||||||||||
seq2  TTCTTTTTATAGATAGTTAGTGATGGGTATACATGTGTCTGGTGGGTATG  300

seq1  TTTGTGTAAGCAAGAGCACGCTTATGTCCAAGTATGTGTGTGGAGGTGAA  350
      |||||||||| ||||||||| |||||| |||||||||||| | |||||||
seq2  TTTGTGTAAGTAAGAGCACGTTTATGTTCAAGTATGTGTGAGAAGGTGAA  350

seq1  AGACAACTTTGGGGGTTGGTCCTTACCTTCTGCTTTGATTGTTTGACACT  400
      ||| |||||||||||| |||  ||| ||| || |   | |||||||||| 
seq2  AGAAAACTTTGGGGGTGGGTTTTTATCTTTTGTTAAAAATGTTTGACACG  400

seq1  GAATATGCTAGGTTAGCTGGCCTTGAACTTCCA--TGGCTTCTCCTGTCC  448
      |||||||||||||||||||||| |||   |  |  |||  ||||||||  
seq2  GAATATGCTAGGTTAGCTGGCCATGA---TAGAGTTGGAATCTCCTGT-T  446

seq1  CTGCCTCCCATCTTCTTGAAGAAGAGGCTGTTGTTATGGGTATTTGCTAC  498
       ||||||||| |||||||||||||||| |||||||||  |||| ||||||
seq2  ATGCCTCCCAACTTCTTGAAGAAGAGGGTGTTGTTATAAGTATATGCTAC  496

seq1  CATAT  503
      |||||
seq2  CATAT  501

seq1: chr9_111728697_111729371
seq2: B6Ng01-118D17.g_540_1190 (reverse)

seq1  TCTATGTTGCTTAGCAT-CATGGGTACGTGTTCTGAAAAGCACATCCTTA  49
      |||||| |||||||||| ||||| | || |||| ||||||||||||||||
seq2  TCTATGGTGCTTAGCATACATGGATCCG-GTTC-GAAAAGCACATCCTTA  48

seq1  TGTGATCTCATTTTTGCAACATGATAAAGTGAGCTTATATCAGCAAAGGC  99
      || ||| |||  ||||| |||||||  | ||||||||| |||||||||||
seq2  TG-GAT-TCA--TTTGC-ACATGAT--ACTGAGCTTAT-TCAGCAAAGGC  90

seq1  AGTTACAGTGCCACTGGGTGCCCCAGTTTTGTATGTGGCCCCTTAGTGAC  149
      || ||||| |||| |||||| ||||| ||||||||||| ||||||| || 
seq2  AG-TACAG-GCCA-TGGGTG-CCCAG-TTTGTATGTGG-CCCTTAGAGA-  133

seq1  CGGGACCCTTTATATACCACATGACTGGGTTAATATAGTCACAAACACCT  199
      |||||||| |||||||||||||||||||||||| ||||||||||||||  
seq2  CGGGACCC-TTATATACCACATGACTGGGTTAA-ATAGTCACAAACAC--  179

seq1  TTTGCTTTTGACTAATGCTTGTGGGATATGAGTTTCCAATGTGTTGTGTA  249
      ||||| |||||||||||| ||||||||||||||||||||||||||||| |
seq2  TTTGC-TTTGACTAATGC-TGTGGGATATGAGTTTCCAATGTGTTGTGAA  227

seq1  TACAAGATTTTAAAAGTTAACTTACACATTTTTGAGATAGGTTCTTGCCT  299
      ||||||  |||||||||||||||||||| ||||||||||||||| |||||
seq2  TACAAGGATTTAAAAGTTAACTTACACA-TTTTGAGATAGGTTC-TGCCT  275

seq1  TGTTTACAACTATTGAATTTGAGCATCCATGCCTGCTTTTTGTTTTTTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACAACTATTGAATTTGAGCATCCATGCCTGCTTTTTGTTTTTTAA  325

seq1  AGAGAACAGCAGTTATTTTAAAAGAACTTAATTCTCTAAGATACTATAAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACAGCAGTTATTTTAAAAGAACTTAATTCTCTAAGATACTATAAT  375

seq1  ATGTCCTGGTCTCCTCTGTGTATTTTCTGCTCCAATTTAAGAAGTGGGTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTGGTCTCCTCTGTGTATTTTCTGCTCCAATTTAAGAAGTGGGTG  425

seq1  TTTCTCCCAGCACTGGCACGTCTCCTTGTCACTGGGATTTCAGGTACATG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCCAGCACTGGCACGTCTCCTTGTCACTGGGATTTCAGGTACATG  475

seq1  AGTGCTTCTGGTTCCCAGCTTGGTGCTATTCCTAGGTTATTTGAGCAGCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTTCTGGTTCCCAGCTTGGTGCTATTCCTAGGTTATTTGAGCAGCC  525

seq1  AGAGTGTGGAAACACCCATGTGTACATAAGAAATCACAGAGTGCTGGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGTGGAAACACCCATGTGTACATAAGAAATCACAGAGTGCTGGTAT  575

seq1  CTGTAAGTATACATGACTATCTGCACTGGTATATAGCCAAGCTTTAGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAGTATACATGACTATCTGCACTGGTATATAGCCAAGCTTTAGTTT  625

seq1  GTACTAGAGTGTACAATTTCAATCTA  675
      ||||||||||||||||||||||||||
seq2  GTACTAGAGTGTACAATTTCAATCTA  651