BAC Information

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BAC

Clone NameB6Ng01-118P03
Chromosome9 (Build37)
Map Location 71,684,609 - 71,826,236
singlet/doubletdoublet
Overlap geneTcf12
Upstream geneLipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1
Downstream geneEG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-118P03.bB6Ng01-118P03.g
ACCDH923287DH923288
length1,0911,170
definitionDH923287|Mus musculus domesticus DNA, BAC clone: B6Ng01-118P03, 5' end.DH923288|Mus musculus domesticus DNA, BAC clone: B6Ng01-118P03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,684,609 - 71,685,716)(71,825,046 - 71,826,236)
sequence
gaattcatcttctgatatgttacttccttggtttgctttctttagagggg
aggaattggaagttcctactatgccccatgaacctactatgtgtcacgta
cctcctcagtagtcagcacagctatcttgaagaagctcatagtctggtca
gctgatgggttgctaaatcacatctcctttctaccccagttgcctcccac
cccggaaatcaccattggtaaaagagttgggcatagctcaaaaatgttac
aaagtttctacttcctggctgcaggaaacgtctccattttgggggttctc
ggcaagtttcaggacactgaattctctagagacatgtgtatagagagtag
gaatgtcaaaacatgggccttgatttggcctctgtgcatgaggggccagg
agtgaagcaaaacaagagaagcacacaagtccacatgaactgcacaggtt
tggacccagcaggaagcattaaggtgctaggacatgtttacctggtcctg
cctcccacttccggctcctccctcttcaccctggacagaaggtcagcagt
ccttggaggaagaatagtcgctttgtgtttttttcctttcttcctgtgcc
taattaagaattatgcttgggaatcaagctaattaatctctgtagttagg
gggatcaagctactcctgctatcagttttgatcaataaccttctgctcag
agtcgtaaagcctttcacgctttaatgaggacagggcaggatggccctgg
ggcttggacggaggccagagggcagggcacctggcccgacaagagaggaa
ttgggagaactgggctgggaggtagagaacctctggggaacctgcttttc
aaggctactttattatgaggtgggccccacaaggcagagatatctaatgt
ccaagccttgggatctgtttggggggatgggatacaacttcattactgga
ctgctacagtaccatctatgaggtgatcacaaactattagaggggaggga
taaaacatcctaacagtggtagaacaagagaagaaggcctgccaggcctg
ccattagcccacaagaaccatgctccgaaggcagggagatg
gaattcatttacctcctcatgaaaagaacccctgagcatccatccttggt
gcctgctgttaacaacacacacatatcagaacgccccttgccacactttg
gaattggcatatctccttgtcaagcatgtcctgaatacttgaaaaataac
tagacagtgttttagtgctttttagctgtgtcaggctgcagaggaggacc
atgaattaggacaaatgctaacattctttctagttactggttttatctag
cttgataaaagctacataactacaggctgtccttgtcttcctgctgtttg
gcttacaatttttactttataaggtttagtatgcgttcagggaaacggtt
ctgagttttgattttgatgttttcctaggctagtagcatatcattaacat
tatcctggtgaagttgaacagaggtggcaagctgtaaacacatcacctta
acaataacttaagggtaatttgccactaagatttttttgttaatagaaaa
tactgtcagatatacctttattataaaataggctttgcactagattttgt
ccaatgatgggctataatgtaatgtgagtgatttaaggtagacaagctaa
aatatgatgtttagtagcctcgatgttggaatgcatttttatctagtaat
acttttatttatagtggttttgccagaatataaagtcgtaatcaggagcg
tctctaacagttaggacttgacataaaatcttaagtaaactgtctgaagt
tttgtatccttttctagtctaagatatctctatttggagaaaagttaatt
tttctttttaaagttgaatggtagatagtaatttaccagcaagattattt
tttcagttgtctctttgtgaagtaatcaacattgtatttttctttgtcta
atcaccagactcctttctctgttaaatatattttattttatgcatacatt
tttttctttggtctgtagaatatataccactagtagcttatgtggataaa
atatggtattcatttctgtaagaaagtaaatcatgtatattagatccaat
ctaaaatataaattaattttgttttcttatggactacctttacagataca
aatttgtatgatatagaataaaatccaaggtcaacttttagtgcaagtgc
taacttggctcatgtctatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_71684609_71685716
seq2: B6Ng01-118P03.b_48_1138

seq1  GAATTCATCTTCTGATATGTTACTTCCTTGGTTTGCTTTCTTTAGAGGGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTTCTGATATGTTACTTCCTTGGTTTGCTTTCTTTAGAGGGG  50

seq1  AGGAATTGGAAGTTCCTACTATGCCCCATGAACCTACTATGTGTCACGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTGGAAGTTCCTACTATGCCCCATGAACCTACTATGTGTCACGTA  100

seq1  CCTCCTCAGTAGTCAGCACAGCTATCTTGAAGAAGCTCATAGTCTGGTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCTCAGTAGTCAGCACAGCTATCTTGAAGAAGCTCATAGTCTGGTCA  150

seq1  GCTGATGGGTTGCTAAATCACATCTCCTTTCTACCCCAGTTGCCTCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGGGTTGCTAAATCACATCTCCTTTCTACCCCAGTTGCCTCCCAC  200

seq1  CCCGGAAATCACCATTGGTAAAAGAGTTGGGCATAGCTCAAAAATGTTAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGGAAATCACCATTGGTAAAAGAGTTGGGCATAGCTCAAAAATGTTAC  250

seq1  AAAGTTTCTACTTCCTGGCTGCAGGAAACGTCTCCATTTTGGGGGTTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTCTACTTCCTGGCTGCAGGAAACGTCTCCATTTTGGGGGTTCTC  300

seq1  GGCAAGTTTCAGGACACTGAATTCTCTAGAGACATGTGTATAGAGAGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGTTTCAGGACACTGAATTCTCTAGAGACATGTGTATAGAGAGTAG  350

seq1  GAATGTCAAAACATGGGCCTTGATTTGGCCTCTGTGCATGAGGGGCCAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTCAAAACATGGGCCTTGATTTGGCCTCTGTGCATGAGGGGCCAGG  400

seq1  AGTGAAGCAAAACAAGAGAAGCACACAAGTCCACATGAACTGCACAGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCAAAACAAGAGAAGCACACAAGTCCACATGAACTGCACAGGTT  450

seq1  TGGACCCAGCAGGAAGCATTAAGGTGCTAGGACATGTTTACCTGGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACCCAGCAGGAAGCATTAAGGTGCTAGGACATGTTTACCTGGTCCTG  500

seq1  CCTCCCACTTCCGGCTCCTCCCTCTTCACCCTGGACAGAAGGTCAGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCACTTCCGGCTCCTCCCTCTTCACCCTGGACAGAAGGTCAGCAGT  550

seq1  CCTTGGAGGAAGAATAGTCGCTTTGTGTTTTTTTCCTTTCTTCCTGTGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGAGGAAGAATAGTCGCTTTGTGTTTTTTTCCTTTCTTCCTGTGCC  600

seq1  TAATTAAGAATTATGCTTGGGAATCAAGCTAATTAATCTCTGTAGTTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAAGAATTATGCTTGGGAATCAAGCTAATTAATCTCTGTAGTTAGG  650

seq1  GGGATCAAGCTACTCCTGCTATCAGTTTTGATCAATAACCTTCTGCTCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATCAAGCTACTCCTGCTATCAGTTTTGATCAATAACCTTCTGCTCAG  700

seq1  AGTCGTAAAGCCTTTCACGCTTTAATGAGGACAGGGCAGGATGGCCCTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGTAAAGCCTTTCACGCTTTAATGAGGACAGGGCAGGATGGCCCTGG  750

seq1  GGCTTGGACGGAGGCCAGAGGGCAGGGCACCTGGCCCGACAAGAGAGGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGACGGAGGCCAGAGGGCAGGGCACCTGGCCCGACAAGAGAGGAA  800

seq1  TTGGGAGAACTGGGCTGGGAGGTAGAGAACCTCTGGGGAACCTGCTTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGAGAACTGGGCTGGGAGGTAGAGAACCTCTGGGGAACCTGCTTTTC  850

seq1  AAGGCTACTTTATTATGAGGTGGGCCCCACAAGGCAGAGATATCTAATGT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTACTTTATTATGAGGTGGGCCCCACAAGGCAGAGATATCTAATGT  900

seq1  CCAAGGCCTTGGGGATCTGTTTGGGGGGATGGGGATACAACTTCATTACT  950
      |||| ||||| ||||||||||||||||||| |||||||||||||||||||
seq2  CCAA-GCCTT-GGGATCTGTTTGGGGGGAT-GGGATACAACTTCATTACT  947

seq1  GGACTGCTACAGGTACCATCTATGAGGGTGATCAACAAAACTATTAGGAA  1000
      ||||||||||| ||||||||||||| ||||||||   ||||||||||  |
seq2  GGACTGCTACA-GTACCATCTATGA-GGTGATCA--CAAACTATTAG--A  991

seq1  GGTGAGGGATAAAAACATCCTAACAGTTGGTAAGAACAAGAGAAGAGGCC  1050
      || ||||||| ||||||||||||||| |||| |||||||||||||| | |
seq2  GGGGAGGGAT-AAAACATCCTAACAG-TGGT-AGAACAAGAGAAGAAGGC  1038

seq1  CTGCCAGGGCTGCACATTAGCCCCACAAAGACCATGGCTTCAGAAGGCCA  1100
      |||||||| |||| |||||| |||||||  ||||||   || ||||| ||
seq2  CTGCCAGGCCTGC-CATTAG-CCCACAAGAACCATG--CTCCGAAGG-CA  1083

seq1  GGGAGATG  1108
      ||||||||
seq2  GGGAGATG  1091

seq1: chr9_71825046_71826236
seq2: B6Ng01-118P03.g_67_1236 (reverse)

seq1  CATAGACATGTAGCAGAGTCTAAGCCAACCTTGTGACAACCCTAAAAGTT  50
      |||||||||| |||  ||  | |||    ||||      | |||||||||
seq2  CATAGACATG-AGCCAAG--TTAGC---ACTTG------CACTAAAAGTT  38

seq1  GACTTGTGATTTTTATCTAATATCATACATATTTTGTATCCTGTAAAGGT  100
      ||| |  ||||||  ||| |||||||||| | ||||||| ||||||||||
seq2  GACCTTGGATTTTATTCT-ATATCATACA-AATTTGTAT-CTGTAAAGGT  85

seq1  AGTCCATAAG-AAACAAAATTAATTTATATTTTAGATTTGGATTCTAAAT  149
      |||||||||| ||||||||||||||||||||||||| ||||| ||| |||
seq2  AGTCCATAAGAAAACAAAATTAATTTATATTTTAGA-TTGGA-TCT-AAT  132

seq1  ATACATGAATTTACTTTCTTACAGAAATGAATACCATATTTTATCCACAT  199
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATG-ATTTACTTTCTTACAGAAATGAATACCATATTTTATCCACAT  181

seq1  AAGGCTACTAGTGGTAATATATTCTACAGACCAAAAGAAAAAAATGTATG  249
      || |||||||||||| |||||||||||||||| |||||||||||||||||
seq2  AA-GCTACTAGTGGT-ATATATTCTACAGACC-AAAGAAAAAAATGTATG  228

seq1  CATAAAATAAAATATATTTAACAGAGAAAGGAGTCTGGTGATTAGACAAA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAAATAAAATATATTTAACAGAGAAAGGAGTCTGGTGATTAGACAAA  278

seq1  GAAAAATACAATGTTGATTACTTCACAAAGAGACAACTGAAAAAATAATC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATACAATGTTGATTACTTCACAAAGAGACAACTGAAAAAATAATC  328

seq1  TTGCTGGTAAATTACTATCTACCATTCAACTTTAAAAAGAAAAATTAACT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGGTAAATTACTATCTACCATTCAACTTTAAAAAGAAAAATTAACT  378

seq1  TTTCTCCAAATAGAGATATCTTAGACTAGAAAAGGATACAAAACTTCAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCAAATAGAGATATCTTAGACTAGAAAAGGATACAAAACTTCAGA  428

seq1  CAGTTTACTTAAGATTTTATGTCAAGTCCTAACTGTTAGAGACGCTCCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTACTTAAGATTTTATGTCAAGTCCTAACTGTTAGAGACGCTCCTG  478

seq1  ATTACGACTTTATATTCTGGCAAAACCACTATAAATAAAAGTATTACTAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACGACTTTATATTCTGGCAAAACCACTATAAATAAAAGTATTACTAG  528

seq1  ATAAAAATGCATTCCAACATCGAGGCTACTAAACATCATATTTTAGCTTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATGCATTCCAACATCGAGGCTACTAAACATCATATTTTAGCTTG  578

seq1  TCTACCTTAAATCACTCACATTACATTATAGCCCATCATTGGACAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTTAAATCACTCACATTACATTATAGCCCATCATTGGACAAAATC  628

seq1  TAGTGCAAAGCCTATTTTATAATAAAGGTATATCTGACAGTATTTTCTAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGCAAAGCCTATTTTATAATAAAGGTATATCTGACAGTATTTTCTAT  678

seq1  TAACAAAAAAATCTTAGTGGCAAATTACCCTTAAGTTATTGTTAAGGTGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAAAAAAATCTTAGTGGCAAATTACCCTTAAGTTATTGTTAAGGTGA  728

seq1  TGTGTTTACAGCTTGCCACCTCTGTTCAACTTCACCAGGATAATGTTAAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTACAGCTTGCCACCTCTGTTCAACTTCACCAGGATAATGTTAAT  778

seq1  GATATGCTACTAGCCTAGGAAAACATCAAAATCAAAACTCAGAACCGTTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGCTACTAGCCTAGGAAAACATCAAAATCAAAACTCAGAACCGTTT  828

seq1  CCCTGAACGCATACTAAACCTTATAAAGTAAAAATTGTAAGCCAAACAGC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAACGCATACTAAACCTTATAAAGTAAAAATTGTAAGCCAAACAGC  878

seq1  AGGAAGACAAGGACAGCCTGTAGTTATGTAGCTTTTATCAAGCTAGATAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGACAAGGACAGCCTGTAGTTATGTAGCTTTTATCAAGCTAGATAA  928

seq1  AACCAGTAACTAGAAAGAATGTTAGCATTTGTCCTAATTCATGGTCCTCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGTAACTAGAAAGAATGTTAGCATTTGTCCTAATTCATGGTCCTCC  978

seq1  TCTGCAGCCTGACACAGCTAAAAAGCACTAAAACACTGTCTAGTTATTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCAGCCTGACACAGCTAAAAAGCACTAAAACACTGTCTAGTTATTTT  1028

seq1  TCAAGTATTCAGGACATGCTTGACAAGGAGATATGCCAATTCCAAAGTGT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTATTCAGGACATGCTTGACAAGGAGATATGCCAATTCCAAAGTGT  1078

seq1  GGCAAGGGGCGTTCTGATATGTGTGTGTTGTTAACAGCAGGCACCAAGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGGGCGTTCTGATATGTGTGTGTTGTTAACAGCAGGCACCAAGGA  1128

seq1  TGGATGCTCAGGGGTTCTTTTCATGAGGAGGTAAATGAATTC  1191
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCTCAGGGGTTCTTTTCATGAGGAGGTAAATGAATTC  1170