BAC Information

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BAC

Clone NameB6Ng01-119J19
Chromosome9 (Build37)
Map Location 74,827,349 - 75,003,220
singlet/doubletdoublet
Overlap geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501
Upstream geneWdr72, Nr1h2-ps, LOC100040764, Onecut1
Downstream geneMyo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071, Hmgcll1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119J19.bB6Ng01-119J19.g
ACCDH923778DH923779
length1,1441,127
definitionDH923778|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J19, 5' end.DH923779|Mus musculus domesticus DNA, BAC clone: B6Ng01-119J19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,827,349 - 74,828,494)(75,002,078 - 75,003,220)
sequence
gaattcatcaccagcctggaccacacattgtgatacaatagtggtaacga
tttgatctggcacttgggatctgaggtgtgcctggacaggctgtgggcag
cagcccttcttcagtgaagtgatttcaggctatgttgagatctcaatgaa
aaactgtgtggaagcacacagattaatagcccagcgtactcagtgatgtg
cgactgaaatacccaaatgtcaacatattttctcagtattaggtagattt
caagtttaagactttgccccaagcttcacatttctagatataatacattt
ctcagttttctgagctgtgtcatgctttggaaagaaatggaaggttgaat
cagaaaaaggaggcagaggtgaggactgtcagacagcagtaggcaatggg
ctagagagtgagggaagtctgaggagggagagcagcctcctgccttgtgc
accaccctgcaaacactggactgccttggcctgcctggtagcctctgggt
tgtaacttgtttgtggcttctcttggggttcctcagcaggaacctagcaa
gggcgaccttgtcattgctacccatgttaactagcagggacagccagctg
tctgggagccaggaaatgaatatcacaaataggatgattaagactgtctc
agagtgcagaaatttccagaacagaaattgggtggtactatgaggctaaa
ttttgaaaactcaaacttgtaagtgaaaatggtcagaaatggtcttataa
aagatctctttaattcactttaatccgtacccaaaatttttaatgaccac
agtactttcactgcattgagctatgataattttatttattgtgttatgag
caagatttagtccaggcccaacctagctttatttattttaatattcaatc
aatcaatcaatcaatcaatcaatcaatcaatcagtctctctctctctctc
tctctctctctctctctcacacacacacacacacacacacacacacatgc
acacactatcacacaaaaggagatgagatgtgtgtgcaaggcaaccctcc
accactgagctattacccagccttagtgctcaagacatttgattccccca
ttaacatcgttttccctaccacctgccaggagacccgtgcagtt
gaattccagcacataggaggtagaggcaggaggattaggagttcaagggt
ggcctcagctatacagtaagtttaaggccagccttaggttcatagacctt
gtcccaaaaaaaccaaaaatctattatcttacatgttaactcaaaaacaa
aaacaaaaaccaactaataaaaacagtagaataaaaaagaaatatgtaaa
ctctattaagttaacaaataccaatttcctaacagtggtagtgattgctg
ataaaatgagatcaaaatgctctatcagttcatgggtaaacagacttgta
agctgatttttctcccccatggccaaagagagctccttctaggctgatcc
agtgtatagtctaagctggtaagccatttgtacaagcagaagtgttcctt
tgaggcagcatttctcaacctgtggggtgtgactcctttgaaggtggaat
gacccttttgcagggatcgcctaagaccattggaaaaagcagatatttac
attaggattcataacagtagcaaagttacagttatggagtaggaacaaaa
ataatcatatggttggggtcatacagcatgaagaactgtattaaagggtc
acagcattaggaagggtgagaaccactgctctaaggagggaaaagactac
gtgaagagaggctgtggatgcgtgagaagctgatgatggacagagggaga
agatgggcaaatactggataatttggtgaagtgggactacttgagaattc
tttttcttctaaaatcccacaacgttagccatttcccactcatcctatac
tcctaaggtcacgttagtcattcaaaggtttcaagccaagactagacggt
cagaaaactctattcataaagaggcttcagaaatctcacaacacagcctg
tcccataacttcttgcaatgtaaactagtcacatagtcccgacttgctac
gtgaactatagaacttgtgaagatacatcaccatgcttgcacaggagaca
aaatccagtctctggtatgaaacctgtgagcctttagaagtaatgcatgc
actccgagatgtagtatgtaattactccattagtactacaaaaggtgaat
aaagtcatgcaacataaatctaatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_74827349_74828494
seq2: B6Ng01-119J19.b_49_1192

seq1  GAATTCATCACCAGCCTGGACCACACATTGTGATACAATAGTGGTAACGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCACCAGCCTGGACCACACATTGTGATACAATAGTGGTAACGA  50

seq1  TTTGATCTGGCACTTGGGATCTGAGGTGTGCCTGGACAGGCTGTGGGCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTGGCACTTGGGATCTGAGGTGTGCCTGGACAGGCTGTGGGCAG  100

seq1  CAGCCCTTCTTCAGTGAAGTGATTTCAGGCTATGTTGAGATCTCAATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCTTCTTCAGTGAAGTGATTTCAGGCTATGTTGAGATCTCAATGAA  150

seq1  AAACTGTGTGGAAGCACACAGATTAATAGCCCAGCGTACTCAGTGATGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTGTGGAAGCACACAGATTAATAGCCCAGCGTACTCAGTGATGTG  200

seq1  CGACTGAAATACCCAAATGTCAACATATTTTCTCAGTATTAGGTAGATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACTGAAATACCCAAATGTCAACATATTTTCTCAGTATTAGGTAGATTT  250

seq1  CAAGTTTAAGACTTTGCCCCAAGCTTCACATTTCTAGATATAATACATTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTTAAGACTTTGCCCCAAGCTTCACATTTCTAGATATAATACATTT  300

seq1  CTCAGTTTTCTGAGCTGTGTCATGCTTTGGAAAGAAATGGAAGGTTGAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTTTCTGAGCTGTGTCATGCTTTGGAAAGAAATGGAAGGTTGAAT  350

seq1  CAGAAAAAGGAGGCAGAGGTGAGGACTGTCAGACAGCAGTAGGCAATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAAAGGAGGCAGAGGTGAGGACTGTCAGACAGCAGTAGGCAATGGG  400

seq1  CTAGAGAGTGAGGGAAGTCTGAGGAGGGAGAGCAGCCTCCTGCCTTGTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAGTGAGGGAAGTCTGAGGAGGGAGAGCAGCCTCCTGCCTTGTGC  450

seq1  ACCACCCTGCAAACACTGGACTGCCTTGGCCTGCCTGGTAGCCTCTGGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCCTGCAAACACTGGACTGCCTTGGCCTGCCTGGTAGCCTCTGGGT  500

seq1  TGTAACTTGTTTGTGGCTTCTCTTGGGGTTCCTCAGCAGGAACCTAGCAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACTTGTTTGTGGCTTCTCTTGGGGTTCCTCAGCAGGAACCTAGCAA  550

seq1  GGGCGACCTTGTCATTGCTACCCATGTTAACTAGCAGGGACAGCCAGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGACCTTGTCATTGCTACCCATGTTAACTAGCAGGGACAGCCAGCTG  600

seq1  TCTGGGAGCCAGGAAATGAATATCACAAATAGGATGATTAAGACTGTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGGAGCCAGGAAATGAATATCACAAATAGGATGATTAAGACTGTCTC  650

seq1  AGAGTGCAGAAATTTCCAGAACAGAAATTGGGTGGTACTATGAGGCTAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGCAGAAATTTCCAGAACAGAAATTGGGTGGTACTATGAGGCTAAA  700

seq1  TTTTGAAAACTCAAACTTGTAAGTGAAAATGGTCAGAAATGGTCTTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAAACTCAAACTTGTAAGTGAAAATGGTCAGAAATGGTCTTATAA  750

seq1  AAGATCTCTTTAATTCACTTTAATCCGTACCCAAAATTTTTAATGACCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCTCTTTAATTCACTTTAATCCGTACCCAAAATTTTTAATGACCAC  800

seq1  AGTACTTTCACTGCATTGAGCTATGATAATTTTATTTATTGTGTTATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTCACTGCATTGAGCTATGATAATTTTATTTATTGTGTTATGAG  850

seq1  CAAGATTTAGTCCAGGCCCAACCTAGCTTTATTTATTTTAATATTCAATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATTTAGTCCAGGCCCAACCTAGCTTTATTTATTTTAATATTCAATC  900

seq1  AATCAATCAATCAATCAATCAATCAATCAATCAGTCTCTTCTCTCTCTCT  950
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AATCAATCAATCAATCAATCAATCAATCAATCAGTCTC-TCTCTCTCTCT  949

seq1  CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACACA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||  
seq2  CTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACACATG  999

seq1  CACACACACACACACACACACGAGATGAGATGTGTGTGCAAGGCAAACCC  1050
      |||||||   |||||| | | ||||||||||||||||||||||| |||||
seq2  CACACACTATCACACA-AAAGGAGATGAGATGTGTGTGCAAGGC-AACCC  1047

seq1  TCCACCACTGAGCTA-TACCCAGCCTTAGTGCTC-AGACAATTTGATTCT  1098
      ||||||||||||||| |||||||||||||||||| |||| ||||||||| 
seq2  TCCACCACTGAGCTATTACCCAGCCTTAGTGCTCAAGAC-ATTTGATTCC  1096

seq1  CACATAAACATCGTTTTTCCTACCACCTGCCGAGGAGA-CCGTGCAGTT  1146
      | ||| ||||||||||| ||||||||||||| |||||| ||||||||||
seq2  CCCATTAACATCGTTTTCCCTACCACCTGCC-AGGAGACCCGTGCAGTT  1144

seq1: chr9_75002078_75003220
seq2: B6Ng01-119J19.g_67_1193 (reverse)

seq1  AAAATTAATGTAATTTATGGTATGCATGACTTTATTAAACTTTTTGGTAG  50
      |||||||     |||||||   |||||||||||||| | |||||  ||||
seq2  AAAATTA----GATTTATG--TTGCATGACTTTATTCACCTTTT--GTAG  42

seq1  TACTAAAATGGTGTATATACATACTACATCTCGGAGTGCATGCATTACTT  100
      ||||  ||||| |||  |||||||||||||||||||||||||||||||||
seq2  TACT--AATGGAGTAATTACATACTACATCTCGGAGTGCATGCATTACTT  90

seq1  CTAAAGGCCTCACAGGTTTCATACCAGAGACTGGATTTTTGTCTCCTGTG  150
      ||||||| ||||||||||||||||||||||||||| ||||||||||||||
seq2  CTAAAGG-CTCACAGGTTTCATACCAGAGACTGGA-TTTTGTCTCCTGTG  138

seq1  CAAGCATGGTGATGTATTCTTCACAAGTTCTATAGTTCACGTAGCAAGTC  200
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CAAGCATGGTGATGTA-TCTTCACAAGTTCTATAGTTCACGTAGCAAGTC  187

seq1  GGGGACTATGTGACTAGTTTACATTGCAAGGAAGTTATGGGACAGGCTGT  250
       |||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  -GGGACTATGTGACTAGTTTACATTGCAA-GAAGTTATGGGACAGGCTGT  235

seq1  GTTGTGAGATTTCTGAAGGCCTCTTTATGAATAGAGTTTTCTGACCGTCT  300
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GTTGTGAGATTTCTGAA-GCCTCTTTATGAATAGAGTTTTCTGACCGTCT  284

seq1  AGTCTTGGCTTGAAACCTTTGAATGACTAACGTGACCTTAGGAGTATAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTGGCTTGAAACCTTTGAATGACTAACGTGACCTTAGGAGTATAGG  334

seq1  ATGAGTGGGAAATGGCTAACGTTGTGGGATTTTAGAAGAAAAAGAATTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTGGGAAATGGCTAACGTTGTGGGATTTTAGAAGAAAAAGAATTCT  384

seq1  CAAGTAGTCCCACTTCACCAAATTATCCAGTATTTGCCCATCTTCTCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTAGTCCCACTTCACCAAATTATCCAGTATTTGCCCATCTTCTCCCT  434

seq1  CTGTCCATCATCAGCTTCTCACGCATCCACAGCCTCTCTTCACGTAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCATCATCAGCTTCTCACGCATCCACAGCCTCTCTTCACGTAGTCT  484

seq1  TTTCCCTCCTTAGAGCAGTGGTTCTCACCCTTCCTAATGCTGTGACCCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCCTTAGAGCAGTGGTTCTCACCCTTCCTAATGCTGTGACCCTT  534

seq1  TAATACAGTTCTTCATGCTGTATGACCCCAACCATATGATTATTTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATACAGTTCTTCATGCTGTATGACCCCAACCATATGATTATTTTTGTT  584

seq1  CCTACTCCATAACTGTAACTTTGCTACTGTTATGAATCCTAATGTAAATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACTCCATAACTGTAACTTTGCTACTGTTATGAATCCTAATGTAAATA  634

seq1  TCTGCTTTTTCCAATGGTCTTAGGCGATCCCTGCAAAAGGGTCATTCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTTTTTCCAATGGTCTTAGGCGATCCCTGCAAAAGGGTCATTCCAC  684

seq1  CTTCAAAGGAGTCACACCCCACAGGTTGAGAAATGCTGCCTCAAAGGAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAAGGAGTCACACCCCACAGGTTGAGAAATGCTGCCTCAAAGGAAC  734

seq1  ACTTCTGCTTGTACAAATGGCTTACCAGCTTAGACTATACACTGGATCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCTTGTACAAATGGCTTACCAGCTTAGACTATACACTGGATCAG  784

seq1  CCTAGAAGGAGCTCTCTTTGGCCATGGGGGAGAAAAATCAGCTTACAAGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGAAGGAGCTCTCTTTGGCCATGGGGGAGAAAAATCAGCTTACAAGT  834

seq1  CTGTTTACCCATGAACTGATAGAGCATTTTGATCTCATTTTATCAGCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTACCCATGAACTGATAGAGCATTTTGATCTCATTTTATCAGCAAT  884

seq1  CACTACCACTGTTAGGAAATTGGTATTTGTTAACTTAATAGAGTTTACAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCACTGTTAGGAAATTGGTATTTGTTAACTTAATAGAGTTTACAT  934

seq1  ATTTCTTTTTTATTCTACTGTTTTTATTAGTTGGTTTTTGTTTTTGTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTTTTATTCTACTGTTTTTATTAGTTGGTTTTTGTTTTTGTTTT  984

seq1  TGAGTTAACATGTAAGATAATAGATTTTTGGTTTTTTTGGGACAAGGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTAACATGTAAGATAATAGATTTTTGGTTTTTTTGGGACAAGGTCT  1034

seq1  ATGAACCTAAGGCTGGCCTTAAACTTACTGTATAGCTGAGGCCACCCTTG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACCTAAGGCTGGCCTTAAACTTACTGTATAGCTGAGGCCACCCTTG  1084

seq1  AACTCCTAATCCTCCTGCCTCTACCTCCTATGTGCTGGAATTC  1143
      |||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCTAATCCTCCTGCCTCTACCTCCTATGTGCTGGAATTC  1127