BAC Information

Click to search

BAC

Clone NameB6Ng01-119N07
Chromosome9 (Build37)
Map Location 59,207,934 - 59,429,093
singlet/doubletdoublet
Overlap geneArih1, LOC621119, 4930425N13Rik, Hexa, Brunol6
Upstream geneTbc1d21, 6030419C18Rik, Cd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4
Downstream geneParp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-119N07.bB6Ng01-119N07.g
ACCDH923940DH923941
length939811
definitionDH923940|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N07, 5' end.DH923941|Mus musculus domesticus DNA, BAC clone: B6Ng01-119N07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,428,149 - 59,429,093)(59,207,934 - 59,208,745)
sequence
gaattctcgagaacagggacagtgaatcctttgaaccaggtgagaagagg
tgtgtgattgtttcgtttgcggtgaatgaaaactgagccaaaatgtggtg
tgttcgagaaacagctagaaggctggatacaggagaagtcttgaaagtat
gagcagagtggctagtgaggaatgcaggcattgggttacatgtagcctta
gagaccgcgaataaattttgttctccttcctgagagcaatggagaagcca
ctagagggtgttcactagggatgcgagatgataagatctgtattttcaaa
acggacctctcaagtagaggaaggagaaggagcaacagaaggccacatgc
ctacgggaagccattcggagctggcccagttctccactcagagctggcta
ggaaagcaagtggggcctgttttgttttgtttttcagtggtatcttctat
ggagctgcctcctgaagatggatggattgcctcctgcttattgagaattc
ctagacagtgtcttattttatcaatagggcaactgaagccagagattgtg
tcagtcacagttttgggatcttttgaactcccaggctagggttgttttca
aagcactgtgctggtgtccacagtactcggccattgaaatgaaaatgagt
cactttagtgttcagacatcattggttgctgcgaagagagtggggatgct
gacttagaggccctctgagtttacctccatatctcacaaggcaacatctg
ctttggagaggcatagagtgaatggaggactaaatcactgacccctgggt
ttcacatacattactgttctgccactaaaccataacatgtcctcacactg
gaaggggagctttagaaaaagctttggggaccaggtgctacaaaagagcc
atggagatgcttgggtagagggaaaagctggaagatgga
gaattcttttaactggccacatttaaagaccagctagactctgctttaaa
catattttcttttactgttagtcagtctccatgttgactagcaagtaaga
gcagaggaagctcatccatccagtgcatgtacccagcactgaagacatgg
ctgcatgtcataccagggtgtgtctgcatgtccaggcatcagctaaggag
gctttgagttcaggggaagcaagggaagttctacccctgggtagatagtg
gatggaaactcagcttgtatagtagaaactggacttccctgaggaagaag
tgaccagggcatgtgcacactcagtgtgagtgcagccactgcccttgctc
ttggtaggtctgacctggctatagagattgttgctaaggtaacggtcact
gagaggcagaatgcacacactcagtgaactgagcaacagttgtcgaggca
tcttgtcttgtcagtttatgttgagggtttatttagagtgaataggttga
aagagagtgttgtttccctgccaaccaccaagtaataactgggttagcat
gattttggtctgagtcattgtggtagatatgatcacaaagcactgatagg
cagcttgagtgtggtggtggtgggaggtgcacttacacccacaaggcccc
tggatgcttcttttgtaaactcatattctgtgtcagggattcgaagtaga
acatccctccacatcttcccttttacttctgtcaggcaattttgttccca
gtgacataaaagcaagtgctccattagcttccatgaaatgtattaatgta
atataattttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_59428149_59429093
seq2: B6Ng01-119N07.b_49_987 (reverse)

seq1  TCCATCCTTCCAGCCTTCTACCCTCTAACCCAAGCAATCTCCATGGGCTC  50
      ||||| ||||||||  | | |||||| |||||||| |||||||| |||||
seq2  TCCAT-CTTCCAGC--TTTTCCCTCT-ACCCAAGC-ATCTCCAT-GGCTC  44

seq1  TTTTTGGTAGCACCTGGTCCCCAAAGCTTTTTCTAAAGCTCCCCTTCCAG  100
      ||||  ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTT--GTAGCACCTGGTCCCCAAAGCTTTTTCTAAAGCTCCCCTTCCAG  92

seq1  TGTGAGGACATGTTATGGTTTAGTGGCAGAACAGTAATGTATGTGAAACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGACATGTTATGGTTTAGTGGCAGAACAGTAATGTATGTGAAACC  142

seq1  CAGGGGTCAGTGATTTAGTCCTCCATTCACTCTATGCCTCTCCAAAGCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGGTCAGTGATTTAGTCCTCCATTCACTCTATGCCTCTCCAAAGCAG  192

seq1  ATGTTGCCTTGTGAGATATGGAGGT-AACTCAGAGGGCCTCTAAGTCAGC  249
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATGTTGCCTTGTGAGATATGGAGGTAAACTCAGAGGGCCTCTAAGTCAGC  242

seq1  ATCCCCACTCTCTTCGCAGCAACCAATGATGTCTGAACACTAAAGTGACT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCACTCTCTTCGCAGCAACCAATGATGTCTGAACACTAAAGTGACT  292

seq1  CATTTTCATTTCAATGGCCGAGTACTGTGGACACCAGCACAGTGCTTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCATTTCAATGGCCGAGTACTGTGGACACCAGCACAGTGCTTTGA  342

seq1  AAACAACCCTAGCCTGGGAGTTC-AAAGATCCCAAAACTGTGACTGACAC  398
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  AAACAACCCTAGCCTGGGAGTTCAAAAGATCCCAAAACTGTGACTGACAC  392

seq1  AATCTCTGGCTTCAGTTGCCCTATTGATAAAATAAGACACTGTCTAGGAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCTGGCTTCAGTTGCCCTATTGATAAAATAAGACACTGTCTAGGAA  442

seq1  TTCTCAATAAGCAGGAGGCAATCCATCCATCTTCAGGAGGCAGCTCCATA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATAAGCAGGAGGCAATCCATCCATCTTCAGGAGGCAGCTCCATA  492

seq1  GAAGATACCACTGAAAAACAAAACAAAACAGGCCCCACTTGCTTTCCTAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATACCACTGAAAAACAAAACAAAACAGGCCCCACTTGCTTTCCTAG  542

seq1  CCAGCTCTGAGTGGAGAACTGGGCCAGCTCCGAATGGCTTCCCGTAGGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTCTGAGTGGAGAACTGGGCCAGCTCCGAATGGCTTCCCGTAGGCA  592

seq1  TGTGGCCTTCTGTTGCTCCTTCTCCTTCCTCTACTTGAGAGGTCCGTTTT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCCTTCTGTTGCTCCTTCTCCTTCCTCTACTTGAGAGGTCCGTTTT  642

seq1  GAAAATACAGATCTTATCATCTCGCATCCCTAGTGAACACCCTCTAGTGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACAGATCTTATCATCTCGCATCCCTAGTGAACACCCTCTAGTGG  692

seq1  CTTCTCCATTGCTCTCAGGAAGGAGAACAAAATTTATTCGCGGTCTCTAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCATTGCTCTCAGGAAGGAGAACAAAATTTATTCGCGGTCTCTAA  742

seq1  GGCTACATGTAACCCAATGCCTGCATTCCTCACTAGCCACTCTGCTCATA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATGTAACCCAATGCCTGCATTCCTCACTAGCCACTCTGCTCATA  792

seq1  CTTTCAAGACTTCTCCTGTATCCAGCCTTCTAGCTGTTTCTCGAACACAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAAGACTTCTCCTGTATCCAGCCTTCTAGCTGTTTCTCGAACACAC  842

seq1  CACATTTTGGCTCAGTTTTCATTCACCGCAAACGAAACAATCACACACCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTTGGCTCAGTTTTCATTCACCGCAAACGAAACAATCACACACCT  892

seq1  CTTCTCACCTGGTTCAAAGGATTCACTGTCCCTGTTCTCGAGAATTC  945
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCACCTGGTTCAAAGGATTCACTGTCCCTGTTCTCGAGAATTC  939

seq1: chr9_59207934_59208745
seq2: B6Ng01-119N07.g_69_879

seq1  GAATTCTTTTAACTGGCCACATTTAAAGACCAGCTAGACTCTGCTTTAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAACTGGCCACATTTAAAGACCAGCTAGACTCTGCTTTAAA  50

seq1  CATATTTTCTTTTACTGTTAGTCAGTCTCCATGTTGACTAGCAAGTAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTTTCTTTTACTGTTAGTCAGTCTCCATGTTGACTAGCAAGTAAGA  100

seq1  GCAGAGGAAGCTCATCCATCCAGTGCATGTACCCAGCACTGAAGACATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGGAAGCTCATCCATCCAGTGCATGTACCCAGCACTGAAGACATGG  150

seq1  CTGCATGTCATACCAGGGTGTGTCTGCATGTCCAGGCATCAGCTAAGGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGTCATACCAGGGTGTGTCTGCATGTCCAGGCATCAGCTAAGGAG  200

seq1  GCTTTGAGTTCAGGGGAAGCAAGGGAAGTTCTACCCCTGGGTAGATAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAGTTCAGGGGAAGCAAGGGAAGTTCTACCCCTGGGTAGATAGTG  250

seq1  GATGGAAACTCAGCTTGTATAGTAGAAACTGGACTTCCCTGAGGAAGAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGAAACTCAGCTTGTATAGTAGAAACTGGACTTCCCTGAGGAAGAAG  300

seq1  TGACCAGGGCATGTGCACACTCAGTGTGAGTGCAGCCACTGCCCTTGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGGGCATGTGCACACTCAGTGTGAGTGCAGCCACTGCCCTTGCTC  350

seq1  TTGGTAGGTCTGACCTGGCTATAGAGATTGTTGCTAAGGTAACGGTCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTAGGTCTGACCTGGCTATAGAGATTGTTGCTAAGGTAACGGTCACT  400

seq1  GAGAGGCAGAATGCACACACTCAGTGAACTGAGCAACAGTTGTCGAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGCAGAATGCACACACTCAGTGAACTGAGCAACAGTTGTCGAGGCA  450

seq1  TCTTGTCTTGTCAGTTTATGTTGAGGGTTTATTTAGAGTGAATAGGTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTCTTGTCAGTTTATGTTGAGGGTTTATTTAGAGTGAATAGGTTGA  500

seq1  AAGAGAGTGTTGTTTCCCTGCCAACCACCAAGTAATAACTGGGTTAGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAGTGTTGTTTCCCTGCCAACCACCAAGTAATAACTGGGTTAGCAT  550

seq1  GATTTTGGTCTGAGTCATTGTGGTAGATATGATCACAAAGCACTGATAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTGGTCTGAGTCATTGTGGTAGATATGATCACAAAGCACTGATAGG  600

seq1  CAGCTTGAGTGTGGTGGTGGTGGGAGGTGCACTTACACCCACAAGGCCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTGAGTGTGGTGGTGGTGGGAGGTGCACTTACACCCACAAGGCCCC  650

seq1  TGGATGCTTCTTTTGTAAACTCATATTCTGTGTCAGGGATTCGAAAGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGATGCTTCTTTTGTAAACTCATATTCTGTGTCAGGGATTCG-AAGTAG  699

seq1  AACATCCCTCCACATCTTCCTTTTTACTTCTGTCAGGCAA-TTTGTTCCC  749
      |||||||||||||||||||| ||||||||||||||||||| |||||||||
seq2  AACATCCCTCCACATCTTCCCTTTTACTTCTGTCAGGCAATTTTGTTCCC  749

seq1  AGTGACATAAAAGCAAGTGCTCCAGTAGCTTCCAGTGAAATGTATTAATG  799
      |||||||||||||||||||||||| ||||||||| |||||||||||||||
seq2  AGTGACATAAAAGCAAGTGCTCCATTAGCTTCCA-TGAAATGTATTAATG  798

seq1  TAATATAATTTTC  812
      |||||||||||||
seq2  TAATATAATTTTC  811