BAC Information

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BAC

Clone NameB6Ng01-120F16
Chromosome9 (Build37)
Map Location 94,441,756 - 94,561,939
singlet/doubletdoublet
Overlap geneEG667601
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik
Downstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9, Pcolce2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-120F16.bB6Ng01-120F16.g
ACCDH924319DH924320
length9551,108
definitionDH924319|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F16, 5' end.DH924320|Mus musculus domesticus DNA, BAC clone: B6Ng01-120F16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,441,756 - 94,442,636)(94,560,813 - 94,561,939)
sequence
gaattcaaagatgtccctgcttctgttttgactgctgataggctacctgg
atgggacctgatcctgaaatgaccatctctagcacacctgggcctaactt
tactgtcctaggctaaccttgaactaaggaatctacctgcctttgtatct
ttctgagaagctggctctttactgcggctgctgttgtttctttggatctg
tgacgcccctcatataactcatattgcatccttatattttttcatgtgga
gaaattatatatttttgagctcatgtttttagagttcatttccacagccc
taagggctgacctaaagggtgcagtgtttgccattctgctaaagcactag
ccacacctttgcctcccacactcctataggcccggattgttgtggagtca
gtaacattaatgggaagacattcctcggataaatgcaaaaaaaaaaaaaa
aaaaaaatgtacattattataccaacaagccttgtgccggcagcagccaa
ctacactccaggaggcccatttcccctggccctgtctcggggaggaacca
tgtcattctgtccccaccaaggccctgctggactagcaggtctctgcaag
agaaataaaggctctgaactgccgctccgcctcccagtcatccatggttg
tgatcagtgttttctattgcattgtcttgagacatttgtgctgtcccaat
cggtaattaaatgctgttgctttctggaaggatattgcattacacaaaac
tttcctcccgaatccacccccccctcaagctactaagcagatgactagct
cctgcagacccctattatgtagtgtggctggagcctgaacacttgcaatt
atataatcagcgaggagtataaatttaaatctattcatgtcttctggcag
tgatgttaaaatgtgagttgattcgagaatatggctgctttacaataaac
tacac
ttgtggtccatacctggaaaccagccacaccagatctggcagctcctgta
ctcgtgagaactctcgctgtaccccgctaatacctctgtgttcagtgctc
taaatcaagtcctagatgggtgagaagtttccttaactccatccatatca
aaaggggaccattcattccagtggagctttttaaacttccaagtgatgct
cctcaccagttgcactgagtttttgcttaagtagctcaaactacctcact
ttaaagggagcctaaatggacttgaaacattatattcagtacttaaagca
ttaatctcaattatatgagggtcttgtttttgtttggttttactcttgag
agacaaagtcttgctacgtacctctggctggcctgaaactcactatatat
atagcccaaggtagcattgaattcatggtagaatctctcaagagctgaga
ttgcaggcatgaaccaccatacctggctgtaactgttaaattgtggaaac
aaaagcgcaaatctaacttcccccacccctctgtaaatttatgtttcttt
tatcttttgtctctactgtccagcttctgatgtgtcttccttactggtaa
gtaactggctgctggatcagagttcccgctctccccttactcttgctttt
gaaatcacccagtttcccagagtcctccactttaaacccatgacttgtaa
gtcagacaaatgcttgctttgctcagacacatccagtcaccttcaccaca
ttaagctgccctgctctacacagggagatgacttccagccactaactggt
ttggacctgttcctttttgtttgtttgtctatctattggttgttgtttta
actcagctgggccactttcactgtgttttatctcacagatttgaaccatg
tcacttgaaagtggagttttgcactatatcagtgaaccaccttcacttac
ttagcatcttatgtgcgctctggtggatctctggtacttctccataatga
tggtcagattctgaaactgcatgtgcagtgacttcagaagttcccagctc
ctctcttatggaacgtagacgcagtcctaagaagctcgaatccagaaagt
aattgctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_94441756_94442636
seq2: B6Ng01-120F16.b_130_999

seq1  ACCTGGGCCTAACTTTACTGTCCTAGGCTAACCTTGAACTAAGGAATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGGGCCTAACTTTACTGTCCTAGGCTAACCTTGAACTAAGGAATCTA  50

seq1  CCTGCCTTTGTATCTTTCTGAGAAGCTGGCTCTTTACTGCGGCTGCTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCCTTTGTATCTTTCTGAGAAGCTGGCTCTTTACTGCGGCTGCTGTT  100

seq1  GTTTCTTTGGATCTGTGACGCCCCTCATATAACTCATATTGCATCCTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGGATCTGTGACGCCCCTCATATAACTCATATTGCATCCTTAT  150

seq1  TTTTTTTCATGTTGAGAAATTATATATTTTTGAGCTCATGTTTTTAGAGT  200
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCATGTGGAGAAATTATATATTTTTGAGCTCATGTTTTTAGAGT  200

seq1  TCTTTTCCACAGCCCTAAGGGCTGACCTAAAGGGTGCAGTGTTTGCCATT  250
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCCACAGCCCTAAGGGCTGACCTAAAGGGTGCAGTGTTTGCCATT  250

seq1  CTGCTAAAGCACTAGCCACACCTTTGCCTCCCAGACTCCTATAGGCCCGG  300
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CTGCTAAAGCACTAGCCACACCTTTGCCTCCCACACTCCTATAGGCCCGG  300

seq1  ATTGTTGTGGAGTCAGTAACATTAATGGGAAGACATTCCTCGGAGAAATG  350
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATTGTTGTGGAGTCAGTAACATTAATGGGAAGACATTCCTCGGATAAATG  350

seq1  CAAAAAAAAAAAAAAAAAAAAATGTACATTATTATACCAACAAGCCTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAAAAAAAAAAAAAAAAATGTACATTATTATACCAACAAGCCTTGT  400

seq1  GCCGGCAGCAGCCAACTACACTCCTGGAGGCCCATTTCCACTGGCCCTGT  450
      |||||||||||||||||||||||| |||||||||||||| ||||||||||
seq2  GCCGGCAGCAGCCAACTACACTCCAGGAGGCCCATTTCCCCTGGCCCTGT  450

seq1  CTCGGGCAGGAACCATGTCATTCTGTCCCCACCAAGGCCCTGCTGGACTA  500
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGGGGAGGAACCATGTCATTCTGTCCCCACCAAGGCCCTGCTGGACTA  500

seq1  GCAGGTCTCTGCAAGAGCAATAAAGGCTCTGAACTGCCGCTCCACCTCCC  550
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  GCAGGTCTCTGCAAGAGAAATAAAGGCTCTGAACTGCCGCTCCGCCTCCC  550

seq1  AGTCATCTATGGTTGTGATCAGTGTTTTCTATTGCATTGTCTTGAGACAT  600
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATCCATGGTTGTGATCAGTGTTTTCTATTGCATTGTCTTGAGACAT  600

seq1  TTTTGCTGTCACAATTGGGAGTTAAATGCTGTTGCTTTCTGGAAGGATAA  650
      || ||||||| |||| || | |||||||||||||||||||||||||||| 
seq2  TTGTGCTGTCCCAATCGGTAATTAAATGCTGTTGCTTTCTGGAAGGATAT  650

seq1  TGTATTACACAAAACTTTCCATCAGAGAATTAACCCACCCCAAAAGCTAC  700
      || |||||||||||||||||  |   ||||  |||| ||||  |||||||
seq2  TGCATTACACAAAACTTTCCTCC--CGAATCCACCCCCCCCTCAAGCTAC  698

seq1  TAAGCAGTTAAAAAGTACCTGCAGAGTTCTATTATGTAGTGTGGCTTTAA  750
      ||||||| | |  ||  ||||||||   ||||||||||||||||| |  |
seq2  TAAGCAGATGACTAGCTCCTGCAGACCCCTATTATGTAGTGTGGC-TGGA  747

seq1  GCATGAACACTTGTAATT-TATAATATCTATGGAGGAAGTATAAATTTAA  799
      || |||||||||| |||| ||||||    |  |||| |||||||||||||
seq2  GCCTGAACACTTGCAATTATATAAT---CAGCGAGG-AGTATAAATTTAA  793

seq1  ATCTATTCATGTCTTCTGGCTGTGATGTTCAAAATGTGAAGTAAATTTGG  849
      |||||||||||||||||||| |||||||| |||||||||  | |  || |
seq2  ATCTATTCATGTCTTCTGGCAGTGATGTT-AAAATGTGAGTTGA--TTCG  840

seq1  AGTAATATGGCTGCTTTACAATAAAACTACAC  881
      || ||||||||||||||||||| |||||||||
seq2  AG-AATATGGCTGCTTTACAAT-AAACTACAC  870

seq1: chr9_94560813_94561939
seq2: B6Ng01-120F16.g_80_1183 (reverse)

seq1  AAGCAATTACTTCTTTGAATCTAGCATCTTGAGAACTGCTGTCTTAGGTT  50
      ||||||||||||  | || || ||| |||| || ||||| ||||  |   
seq2  AAGCAATTACTTTCTGGATTCGAGCTTCTT-AGGACTGC-GTCTACG---  45

seq1  TTCAATAAGAGAGGAGCTGGGAAACTTCTAGAAGTCACTGCACATGGCAG  100
      ||| ||||||||||||||||| ||||||| ||||||||||||||| ||||
seq2  TTCCATAAGAGAGGAGCTGGG-AACTTCT-GAAGTCACTGCACAT-GCAG  92

seq1  TTTCAGAAATCTGACCATCATTTATGGGAGAAGTACCAGGAAGATCCA-C  149
      |||||| ||||||||||||| |||| |||||||||||||  ||||||| |
seq2  TTTCAG-AATCTGACCATCA-TTAT-GGAGAAGTACCAG--AGATCCACC  137

seq1  AGAGCGCACATTAAGATTGCTAGGTAAGTGGAAGGTGGTTCACTGATTAT  199
      |||||||||| ||||| ||||| |||||| |||||||||||||||| |||
seq2  AGAGCGCACA-TAAGA-TGCTAAGTAAGT-GAAGGTGGTTCACTGA-TAT  183

seq1  AGGTGGCAAAACT-CACTTTCCAGTGACATGGTTCAAATTCTGGTGAGAT  248
      ||   |||||||| ||||||| |||||||||||||||| ||| |||||||
seq2  AG--TGCAAAACTCCACTTTCAAGTGACATGGTTCAAA-TCT-GTGAGAT  229

seq1  AAAACACAGTGAAAGTGGGCCAGCTGAGTTAAAAACAAACAAACAATAGA  298
      |||||||||||||||||| |||||||||||||||   ||||| |||||||
seq2  AAAACACAGTGAAAGTGGCCCAGCTGAGTTAAAA--CAACAACCAATAGA  277

seq1  TAGACAAACAAAAACAAAAAAGGAACAGGTCCAAACCAGTTAGTGGCTGG  348
      ||||||||||||    ||||||||||||||||||||||||||||||||||
seq2  TAGACAAACAAA---CAAAAAGGAACAGGTCCAAACCAGTTAGTGGCTGG  324

seq1  AAGTCATCT-CCTGTGTAGAGCAGGGCAGCTTAATGTGGTGAAGGTGACT  397
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCATCTCCCTGTGTAGAGCAGGGCAGCTTAATGTGGTGAAGGTGACT  374

seq1  GGATGTGTCTGAGCAAAGCAAGCATTTGTCTGACTTACAAGTCATGGGTT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTCTGAGCAAAGCAAGCATTTGTCTGACTTACAAGTCATGGGTT  424

seq1  TAAAGTGGAGGACTCTGGGAAACTGGGTGATTTCAAAAGGAAGAGTAAGG  497
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TAAAGTGGAGGACTCTGGGAAACTGGGTGATTTCAAAAGCAAGAGTAAGG  474

seq1  GGAGAGCGGGAACTCTGATCCAGCAGCCAGCTACTTACCAGTAAGGAAGA  547
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  GGAGAGCGGGAACTCTGATCCAGCAGCCAGTTACTTACCAGTAAGGAAGA  524

seq1  CACATCAGAAGCTGGACAGTAGAGACAAAAGATAAAAGAAACCTAAATTT  597
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CACATCAGAAGCTGGACAGTAGAGACAAAAGATAAAAGAAACATAAATTT  574

seq1  ACAGAGGGGTGGGGGAAGTTAGATTTGCGCTTTTGTTTCCACAATTTAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAGGGGTGGGGGAAGTTAGATTTGCGCTTTTGTTTCCACAATTTAAC  624

seq1  AGTTACAGCCAGGTATGGTGGTTCATGCCTGCAATCTCAGCTCTTGAGAG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTACAGCCAGGTATGGTGGTTCATGCCTGCAATCTCAGCTCTTGAGAG  674

seq1  ATTCTACCATGAATTCAATGCTAGCCTGGGCTATATATATAGTGAGTTTC  747
      ||||||||||||||||||||||| | ||||||||||||||||||||||||
seq2  ATTCTACCATGAATTCAATGCTACCTTGGGCTATATATATAGTGAGTTTC  724

seq1  AGGCCAGCCAGAGCTACGTAGCAAGACTTTGTCTCTCAAGAGTAAAACCA  797
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGCCAGCCAGAGGTACGTAGCAAGACTTTGTCTCTCAAGAGTAAAACCA  774

seq1  AACAAAAACAAGAACCTCATATAATTGAGATTAATGCTTTAAGTACTGAA  847
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AACAAAAACAAGACCCTCATATAATTGAGATTAATGCTTTAAGTACTGAA  824

seq1  TATATTGTTTCAAGTCCATTTAGGCTCACTTTAAAGTGATGTAGTTTGAG  897
      |||| |||||||||||||||||||||| ||||||||||| ||||||||||
seq2  TATAATGTTTCAAGTCCATTTAGGCTCCCTTTAAAGTGAGGTAGTTTGAG  874

seq1  CTACTTATGCAAAAACTCACTGCAACTGGTGAGGAGCATCACTTGGAAGT  947
      ||||||| ||||||||||| ||||||||||||||||||||||||||||||
seq2  CTACTTAAGCAAAAACTCAGTGCAACTGGTGAGGAGCATCACTTGGAAGT  924

seq1  TTAAAAAGCTCCACTGGAATGAATGGTCCCCTTTTGATATGGATGGAGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGCTCCACTGGAATGAATGGTCCCCTTTTGATATGGATGGAGTT  974

seq1  AAGGAAACTTCTCACCCATCTAGGACTTGATTTAGAGCACTGAACACAGA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAACTTCTCACCCATCTAGGACTTGATTTAGAGCACTGAACACAGA  1024

seq1  GGTCTTAGCGGGGTACAGCGAGAGTTCTCATGAGTACAGGAGCTGCTAGA  1097
      ||| |||||||||||||||||||||||||| ||||||||||||||| |||
seq2  GGTATTAGCGGGGTACAGCGAGAGTTCTCACGAGTACAGGAGCTGCCAGA  1074

seq1  TCTGGTGTGGCTGGTTTCCAGGTATGGACC  1127
      ||||||||||||||||||||||||||||||
seq2  TCTGGTGTGGCTGGTTTCCAGGTATGGACC  1104