BAC Information

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BAC

Clone NameB6Ng01-121B09
Chromosome9 (Build37)
Map Location 106,955,561 - 107,126,080
singlet/doubletdoublet
Overlap geneDock3
Upstream gene1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1, Abhd14a, Abhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet
Downstream geneMapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh, Bsn, LOC100042108, Dag1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121B09.bB6Ng01-121B09.g
ACCDH924859DH924860
length477929
definitionDH924859|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B09, 5' end.DH924860|Mus musculus domesticus DNA, BAC clone: B6Ng01-121B09, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(106,955,561 - 106,956,043)(107,125,536 - 107,126,080)
sequence
tgttgggacaaagtgaatgtatttcatatgtcagaaagatagtcattagg
gggcgatcgggacagaaggttataaaccatgtttgtgtcactctcagatt
ccttctgaaaatctgaacctatataaggagttggtgtctttaagaggtag
ttaagccatgagggtagaagtctaaagagtgagggctggagaggcagctg
attagtttagagcacaggaaatgtgagttaacttgccaacacccatatgg
ggtggctcacaactgcccgtaactccagccgcagagatcaaatgactcta
gtgtccatgggcacctatacacaggtgcacatgcccatatacaaacatac
atacacacgtgttaagataaataattttcttaaaaaggaatgagagtggt
gggggaagagaggatggatttctctttcggttgtgtgaaaattgtatatg
tatatgtatatgtatatgtatatgtat
gaattcatttgatgtttatttttctgtattcattttttttatgtaagaga
tatattcattatagaaatattaaatatggaaaaacagacaaaaagaaatt
aaacatgttttttttaacacagatataactctagctgacataatgacgta
tctttctagtctttttaaaaaaaagtatgtataaatatttatttaaaata
actttaggaccatactgttttacacacccacaattaatttgaagtcaaag
cactacttgtggagctagtcttttcttctaccacgatctcttgcttaatc
agtctttcctttggagaaagggtttgctgaacttgaagtttatcaggtca
ggcaggctggctggctagtgatatatgagttctgtctatttatgtccctg
tctcccaaagctgtgattgcacatgctccacactcagcagcttacatgca
tctgagcatccaaactcagggccttgtgcttgagtggcaggcactttacc
aactgagtcatctttctagccttccgttttcttcttgacttttttttttt
ttaaatgagccattcttcatttaatagtgtgtcatttaatctctgtgaga
tcgtgaatgttttatttctcttgtcattgattctagttttattctattat
ggtcagatagaatataagaagttcttttttttgtatttgttaagacttgc
tttgtattctattatatggtctattttagagaaatttctatgtgacgata
gaaagcttatgagatgtctggtaggtctatttgacctatgatatcactta
actcagattttttttaatcaggcagacctgtctgtttattaaaatgatgt
attaacatcacttattattattatgtaagattaatctgtgacttatatct
agtagtagtagttttatgaaattgggttc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_106955561_106956043
seq2: B6Ng01-121B09.b_46_528

seq1  GAATTCTGTTGGGACAAAGTGAATGTATTTCATATGTCAGAAAGATAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTGGGACAAAGTGAATGTATTTCATATGTCAGAAAGATAGTC  50

seq1  ATTAGGGGGCGATCGGGACAGAAGGTTATAAACCATGTTTGTGTCACTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGGGCGATCGGGACAGAAGGTTATAAACCATGTTTGTGTCACTCT  100

seq1  CAGATTCCTTCTGAAAATCTGAACCTATATAAGGAGTTGGTGTCTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTCCTTCTGAAAATCTGAACCTATATAAGGAGTTGGTGTCTTTAAG  150

seq1  AGGTAGTTAAGCCATGAGGGTAGAAGTCTAAAGAGTGAGGGCTGGAGAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAGTTAAGCCATGAGGGTAGAAGTCTAAAGAGTGAGGGCTGGAGAGG  200

seq1  CAGCTGATTAGTTTAGAGCACAGGAAATGTGAGTTAACTTGCCAACACCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGATTAGTTTAGAGCACAGGAAATGTGAGTTAACTTGCCAACACCC  250

seq1  ATATGGGGTGGCTCACAACTGCCCGTAACTCCAGCCGCAGAGATCAAATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGGGTGGCTCACAACTGCCCGTAACTCCAGCCGCAGAGATCAAATG  300

seq1  ACTCTAGTGTCCATGGGCACCTATACACAGGTGCACATGCCCATATACAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAGTGTCCATGGGCACCTATACACAGGTGCACATGCCCATATACAA  350

seq1  ACATACATACACACGTGTTAAGATAAATAATTTTCTTAAAAAGGAATGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACATACACACGTGTTAAGATAAATAATTTTCTTAAAAAGGAATGAG  400

seq1  AGTGGTGGGGGAAGAGAGGATGGATTTCTCTTTCGGTTGTGTGAAAATTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGTGGGGGAAGAGAGGATGGATTTCTCTTTCGGTTGTGTGAAAATTG  450

seq1  TATATGTATATGTATATGTATATGTATATGTAT  483
      |||||||||||||||||||||||||||||||||
seq2  TATATGTATATGTATATGTATATGTATATGTAT  483

seq1: chr9_107125536_107126080
seq2: B6Ng01-121B09.g_66_610 (reverse)

seq1  AAAAAAGTCAAGAAGAAAACGGAAGGCTAGAAAGATGACTCAGTTGGTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGTCAAGAAGAAAACGGAAGGCTAGAAAGATGACTCAGTTGGTAA  50

seq1  AGTGCCTGCCACTCAAGCACAAGGCCCTGAGTTTGGATGCTCAGATGCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCCTGCCACTCAAGCACAAGGCCCTGAGTTTGGATGCTCAGATGCAT  100

seq1  GTAAGCTGCTGAGTGTGGAGCATGTGCAATCACAGCTTTGGGAGACAGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGCTGAGTGTGGAGCATGTGCAATCACAGCTTTGGGAGACAGGG  150

seq1  ACATAAATAGACAGAACTCATATATCACTAGCCAGCCAGCCTGCCTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATAGACAGAACTCATATATCACTAGCCAGCCAGCCTGCCTGACC  200

seq1  TGATAAACTTCAAGTTCAGCAAACCCTTTCTCCAAAGGAAAGACTGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTTCAAGTTCAGCAAACCCTTTCTCCAAAGGAAAGACTGATTA  250

seq1  AGCAAGAGATCGTGGTAGAAGAAAAGACTAGCTCCACAAGTAGTGCTTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGAGATCGTGGTAGAAGAAAAGACTAGCTCCACAAGTAGTGCTTTG  300

seq1  ACTTCAAATTAATTGTGGGTGTGTAAAACAGTATGGTCCTAAAGTTATTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAAATTAATTGTGGGTGTGTAAAACAGTATGGTCCTAAAGTTATTT  350

seq1  TAAATAAATATTTATACATACTTTTTTTTAAAAAGACTAGAAAGATACGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATATTTATACATACTTTTTTTTAAAAAGACTAGAAAGATACGT  400

seq1  CATTATGTCAGCTAGAGTTATATCTGTGTTAAAAAAAACATGTTTAATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTATGTCAGCTAGAGTTATATCTGTGTTAAAAAAAACATGTTTAATTT  450

seq1  CTTTTTGTCTGTTTTTCCATATTTAATATTTCTATAATGAATATATCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTCTGTTTTTCCATATTTAATATTTCTATAATGAATATATCTCT  500

seq1  TACATAAAAAAAATGAATACAGAAAAATAAACATCAAATGAATTC  545
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAAAAAAAATGAATACAGAAAAATAAACATCAAATGAATTC  545