BAC Information

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BAC

Clone NameB6Ng01-121C03
Chromosome9 (Build37)
Map Location 89,777,131 - 89,895,114
singlet/doubletdoublet
Overlap geneRasgrf1
Upstream geneLOC100039741, Bcl2a1a, LOC100039689, EG666747, LOC100039714, 4930579C12Rik, Bcl2a1b, Mthfs, AF529169, Tmed3, B230218L05Rik
Downstream geneCtsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777, LOC100039925
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121C03.bB6Ng01-121C03.g
ACCDH924894DH924895
length9461,129
definitionDH924894|Mus musculus domesticus DNA, BAC clone: B6Ng01-121C03, 5' end.DH924895|Mus musculus domesticus DNA, BAC clone: B6Ng01-121C03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,777,131 - 89,777,959)(89,893,980 - 89,895,114)
sequence
ttcgtttttctgagatggtgtatagatagatgttcacagtggtctcttac
aattggttatatttctgacattcattgcaatgtctcctcttcccagtatt
tgagaaagttgtatttccatttttgttaaagattttttttttttttttgc
ggggggtgggggtgggtcttgctttgtcaactaggatggcttcagattca
taatcctcctgtctgtttctagtatgctaagattgtaaatgtgaaccatc
acatctggactaagacattttcaaattttacttttcaatttcctacttgg
cttatcggttgtttagaaatatgttggttaattttattcgttttcaaatt
tccccttattgacttctacattcgtctcatgtggtctgaaaagaaacttg
atatgatttccattttcctgcatatatttagatttcttctgtgacctaat
atatggtccacagtggccaacactcaatacctagttgagaagactgtgtg
ctctgtggctgttgaatggaatgttttataaacacctgctcgatccattg
aatttaaaacacagttcattctattccttattagttttctatctacacga
tctgtacaaagttaaaattggttagtaaataaattagcggtacaaaccgc
gggaagttttgccacgagagtacatttgcttttgaacgaaatacagcaga
tctgagtgcataacattctcttttttcctttacatggtatttactaatta
actgggaaacaattgagctttacaatgactctgtttgttttcaaagctac
agtttagcagtttgatcttttggacattttcgatgtgggaataaagaggt
gaagaaaatctaaatcactttatagattcagaacttccagatattcaccc
aataaaggcatgtgaatctacatgtggctgggaatataatgcaaga
gaattcttcccacgtctcactggctgtgtgaccatggggatacttcttca
actccggagccccagggatctccttaggacagtaaggatacattcaaagt
ggttatacaaaggagatcacagaagaatgtacaaaaggctctatgaacaa
ggagacctacttatggtaataatgatgacaaattgccatgagggtcaact
ccagcagcctttgcttcatttcatagaagtgtggaaggcaacctacatca
tcacagcgaagtagcactccttgaggtgtgatggacaactggtcttgctt
taaaaactcagagctgttcttttcctttttccttccttccccttcctttc
cctcccctccctttcctttcttactcttagatgtctcccctccttctctc
tgagatcaactctgtctctgtctctctgtctctgtctctctgtctgtctg
tctgtctctctccgagattatattatttctttttccctccaccctgttga
agacagctctcagtaagttccaaggctttcctgaactctctctgtagccc
aggctggcttggtaccctcattcccctgcctggggctcttgagtatctta
agtgctgggcttacaggcatccctcacagctgggtttcaatgctcatttc
tgaaaatgggctctctgagatctactgctgtgtctgagaagccaaggagg
agctacagtgctcaggtaccttttctctaaaagttgggcagctttgcttc
ttactgggtttctttccaggtatagcagcaggggattctgggatttgggc
tcccccatgaatatggagcaagaacttgaaaatgaatggcaagtttccga
ctttgggaggcagacagattgtcctggtagctaagggcccctaaatcctt
tccacccttggatatccatagccttcctgggggatacagtagtgtttatg
gggacagaaaccaggtagactactcaagaatcctgcagcgcgtgagtctg
aaatgtgagtgggcagaaccactattttccagagtcttggcacccatcca
tgatggtagggatagaaccttaagtattgccaggaaagcactggacatga
gccaccccccggcttgctttcttatttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_89777131_89777959
seq2: B6Ng01-121C03.b_179_999

seq1  TTAAAGATTTTTTTTTTTTTTTTGCGGGGGGTGGGGGTGGGTCTTGCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATTTTTTTTTTTTTTTTGCGGGGGGTGGGGGTGGGTCTTGCTTT  50

seq1  GTCAACTAGGATGGCTTCAGATTCATAATCCTCCTGTCTGTTTCTAGTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAACTAGGATGGCTTCAGATTCATAATCCTCCTGTCTGTTTCTAGTAT  100

seq1  GCTAAGATTGTAAATGTGAACCATCACATCTGGACTAAGACATTTTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAGATTGTAAATGTGAACCATCACATCTGGACTAAGACATTTTCAAA  150

seq1  TTTTACTTTTCAATTTCCTACTTGGCTTATCGGTTGTTTAGAAATATGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTCAATTTCCTACTTGGCTTATCGGTTGTTTAGAAATATGTT  200

seq1  GGTTAATTTTATTCGTTTTCAAATTTCCCCTTATTGACTTCTACATTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAATTTTATTCGTTTTCAAATTTCCCCTTATTGACTTCTACATTCGT  250

seq1  CTCATGTGGTCTGAAAAGAAACTTGATATGATTTCCATTTTCCTGCATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATGTGGTCTGAAAAGAAACTTGATATGATTTCCATTTTCCTGCATAT  300

seq1  ATTTAGATTTCTTCTGTGACCTAATATATGGTCCACAGTGGCCAACACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGATTTCTTCTGTGACCTAATATATGGTCCACAGTGGCCAACACTC  350

seq1  AATACCTAGTTGAGAAGACTGTGTGCTCTGTGGCTGTTGAATGGAATGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCTAGTTGAGAAGACTGTGTGCTCTGTGGCTGTTGAATGGAATGTT  400

seq1  TTATAAACACCTGCTCGATCCATTGAATTTAAAACACAGTTCATTCTATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAACACCTGCTCGATCCATTGAATTTAAAACACAGTTCATTCTATT  450

seq1  CCTTATTAGTTTTCTATCTACACGATCTGTACAAAGTTAAAATTGGTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTAGTTTTCTATCTACACGATCTGTACAAAGTTAAAATTGGTTAG  500

seq1  TAAATAAATTAGCGGTACAAACCGCGGGAAGTTTTGCCACGAGAGTACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAATTAGCGGTACAAACCGCGGGAAGTTTTGCCACGAGAGTACAT  550

seq1  TTGC-TTTGAACGAAATACAGCAGATCTGAGTGCATAACATTCTC-TTTT  598
      |||| |||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTGCTTTTGAACGAAATACAGCAGATCTGAGTGCATAACATTCTCTTTTT  600

seq1  TCCTTTACATGGTATTTACTAATTAACTGGGAAACAATTGAGCTTTACAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTACATGGTATTTACTAATTAACTGGGAAACAATTGAGCTTTACAA  650

seq1  TGACTCTGTTTGTTTTCAAAGCTACAGTATTAGCAGTTTGATCTTTTTGG  698
      |||||||||||||||||||||||||||| |||||||||||||| ||||||
seq2  TGACTCTGTTTGTTTTCAAAGCTACAGT-TTAGCAGTTTGATC-TTTTGG  698

seq1  ACATTTTCGATGTGGGAAATAAAGAGGTGATAGAAAATCTAAATTCAGCT  748
      |||||||||||||||| ||||||||||||| |||||||||||| ||| ||
seq2  ACATTTTCGATGTGGG-AATAAAGAGGTGA-AGAAAATCTAAA-TCA-CT  744

seq1  TTATAGATCCAAGAACATCCAGAATATTTCACCCAATAAAGGCATGTGAA  798
      |||||||| | ||||| ||||| ||| |||||||||||||||||||||||
seq2  TTATAGATTC-AGAACTTCCAG-ATA-TTCACCCAATAAAGGCATGTGAA  791

seq1  TCTACATGTGGCTGGGAATATAATTGCAAGA  829
      ||||||||||||||||||||||| |||||||
seq2  TCTACATGTGGCTGGGAATATAA-TGCAAGA  821

seq1: chr9_89893980_89895114
seq2: B6Ng01-121C03.g_68_1196 (reverse)

seq1  TTAAATAAGGAAAGCAAGGCTGGGGAGTGGCTCATTGGTCCAGTGCTTTC  50
      |||||||| |||||||| || |||| |||||||||  |||||||||||||
seq2  TTAAATAA-GAAAGCAA-GCCGGGGGGTGGCTCAT--GTCCAGTGCTTTC  46

seq1  CTGGC-ATACTTAAGGTTCTATCCCTACCATCATGGATGGGTGCCAAGAC  99
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCAATACTTAAGGTTCTATCCCTACCATCATGGATGGGTGCCAAGAC  96

seq1  TCTGGAAGATAGTGGTTCTGCCCACTCACATTTCAGACTCACGCGCCTGC  149
      ||||||| ||||||||||||||||||||||||||||||||||||| ||||
seq2  TCTGGAAAATAGTGGTTCTGCCCACTCACATTTCAGACTCACGCG-CTGC  145

seq1  AGGATTCTTGAGTAGTCTACCTGGTTTCTGGTCCCCATAAACACTACTGT  199
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  AGGATTCTTGAGTAGTCTACCTGGTTTCT-GTCCCCATAAACACTACTGT  194

seq1  ATCCCCCAGGAAGGCTATGGATATCCAAGGGTGGGAAAGGATTTAGGGGC  249
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ATCCCCCAGGAAGGCTATGGATATCCAAGGGT-GGAAAGGATTTAGGGGC  243

seq1  CCTTAGCTACCAGGACAATCTGTCTGCCTCCCAAAGTCGGAAACTTGCCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGCTACCAGGACAATCTGTCTGCCTCCCAAAGTCGGAAACTTGCCA  293

seq1  TTCATTTTCAAGTTCTTGCTCCATATTCATGGGGGAGCCCAAATCCCAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCAAGTTCTTGCTCCATATTCATGGGGGAGCCCAAATCCCAGA  343

seq1  ATCCCCTGCTGCTATACCTGGAAAGAAACCCAGTAAGAAGCAAAGCTGCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCCTGCTGCTATACCTGGAAAGAAACCCAGTAAGAAGCAAAGCTGCC  393

seq1  CAACTTTTAGAGAAAAGGTACCTGAGCACTGTAGCTCCTCCTTGGCTTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTTAGAGAAAAGGTACCTGAGCACTGTAGCTCCTCCTTGGCTTCT  443

seq1  CAGACACAGCAGTAGATCTCAGAGAGCCCATTTTCAGAAATGAGCATTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACACAGCAGTAGATCTCAGAGAGCCCATTTTCAGAAATGAGCATTGA  493

seq1  AACCCAGCTGTGAGGGATGCCTGTAAGCCCAGCACTTAAGATACTCAAGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAGCTGTGAGGGATGCCTGTAAGCCCAGCACTTAAGATACTCAAGA  543

seq1  GCCCCAGGCAGGGGAATGAGGGTACCAAGCCAGCCTGGGCTACAGAGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGGCAGGGGAATGAGGGTACCAAGCCAGCCTGGGCTACAGAGAGA  593

seq1  GTTCAGGAAAGCCTTGGAACTTACTGAGAGCTGTCTTCAACAGGGTGGAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGAAAGCCTTGGAACTTACTGAGAGCTGTCTTCAACAGGGTGGAG  643

seq1  GGAAAAAGAAATAATATAATCTCGGAGAGAGACAGACAGACAGACAGAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAGAAATAATATAATCTCGGAGAGAGACAGACAGACAGACAGAGA  693

seq1  GACAGAGACAGAGAGACAGAGACAGAGTTGATCTCAGAGAGAAGGAGGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGAGACAGAGAGACAGAGACAGAGTTGATCTCAGAGAGAAGGAGGGG  743

seq1  AGACATCTAAGAGTAAGAAAGGAAAGGGAGGGGAGGGAAAGGAAGGGGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTAAGAGTAAGAAAGGAAAGGGAGGGGAGGGAAAGGAAGGGGAA  793

seq1  GGAAGGAAAAAGGAAAAGAACAGCTCTGAGTTTTTAAAGCAAGACCAGTT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGAAAAAGGAAAAGAACAGCTCTGAGTTTTTAAAGCAAGACCAGTT  843

seq1  GTCCATCACACCTCAAGGAGTGCTACTTCGCTGTGATGATGTAGGTTGCC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCATCACACCTCAAGGAGTGCTACTTCGCTGTGATGATGTAGGTTGCC  893

seq1  TTCCACACTTCTATGAAATGAAGCAAAGGCTGCTGGAGTTGACCCTCATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACACTTCTATGAAATGAAGCAAAGGCTGCTGGAGTTGACCCTCATG  943

seq1  GCAATTTGTCATCATTATTACCATAAGTAGGTCTCCTTGTTCATAGAGCC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGTCATCATTATTACCATAAGTAGGTCTCCTTGTTCATAGAGCC  993

seq1  TTTTGTACATTCTTCTGTGATCTCCTTTGTATAACCACTTTGAATGTATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTACATTCTTCTGTGATCTCCTTTGTATAACCACTTTGAATGTATC  1043

seq1  CTTACTGTCCTAAGGAGATCCCTGGGGCTCCGGAGTTGAAGAAGTATCCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGTCCTAAGGAGATCCCTGGGGCTCCGGAGTTGAAGAAGTATCCC  1093

seq1  CATGGTCACACAGCCAGTGAGACGTGGGAAGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  CATGGTCACACAGCCAGTGAGACGTGGGAAGAATTC  1129