BAC Information

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BAC

Clone NameB6Ng01-121E01
Chromosome9 (Build37)
Map Location 60,552,389 - 60,711,602
singlet/doubletdoublet
Overlap geneLarp6, LOC100040447, Uaca, ENSMUSG00000052143
Upstream geneGramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49
Downstream geneA430102L10, LOC100040481, Tle3, LOC100039851
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121E01.bB6Ng01-121E01.g
ACCDH924983DH924984
length7661,195
definitionDH924983|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E01, 5' end.DH924984|Mus musculus domesticus DNA, BAC clone: B6Ng01-121E01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,552,389 - 60,553,152)(60,709,933 - 60,711,602)
sequence
gaattccaccattgtcctgattatgacacatgaacatgtccagagcttcc
ctttaattccaggggcttccatctctgggcctgacatggctactctagcc
aataggtcaggggaaatgttttgggaaacacatccacattgctagggagg
ggtggcaaacaatacattttattgaccagaacttagtcaggtggttatgc
caagatacaaagcagtcgaaggaatataattgctaattagttggtcatgt
agccatctaaaactggatcaggtataatcaaataaaggagactggatagt
gattgacagttcgcattagaactgccgagactaatggctttgagggccca
gccctaatggatatctacaccaaccccctcagggctcagggaacatcttg
gaggagacagtgaaaaggatacaaaagccagagactggggcagaggactg
tggattgctggggaagagggtcttttgggcatgctatacagtcatgaacc
cctggcagctatggctaccttcacaacacccacacaaaggtcaggccaat
agaatcagtcaacattccagcaggcagcacagcactaactggactcagtg
tgtgtgtgtgtgtgtgtgtgtgtgtgagagagagagacagagagagagag
agacagagagagaagagagacagagacagagacagagagacagagagaca
ggagacaaaagagagacagacagagacagagagagctagtgtgtgtgtgt
gagagagagagaaaga
gaattcataattcaagttcaattccgacaccaggccccttcccgctattc
actgtgaagacagagactaaaagaaaataatttaaacttctttgtacctc
aaaatatttaaatctgtttttcagggcctcgatggttcttaagctttctt
cgtgttgcttttctttagccgccaaaagggacttcagcttttctctctga
aatgggagggaaatagagtaagctgaccctgtgcctgagatgcggtaaac
atctgctttgaaataggaacatgtgcttctgcccttctcagtgaggacct
gagtctccacttcagtcccagtctctatttacaagacacacacaagtttt
aaaataaaacgtggcagcctacctcgctttccagatcatctgcgaccatt
acttcctaaggttaagaagaagaaacacgttttaattcttgaacgtttac
cttagtgagcataaacctgggaaacagcttggaaaggagtggggtgtgtc
cttaaaactgggacaagggtgtgaggaaacccgtctctgggtaccacgtc
tgtcctgtgagctgcaggagcagcttgatgtttgaatcacgcgtctccag
actcacccgccttcgtcaacaatcttcagtccgagtgctggcttcctcgc
tctgctctctttgtgggatgcctatcagctcagaggctgagctctcccac
gctctgcctcctgttctccacactcaccaagtccctacctttgtagaggt
tatgggacacgtctccagttttatttttggaatcagaatgttccctcttt
aaacatcctatttttaattcctacataaaacatcctcttgtctaatggat
aatgctaacagtggacagtggagagtttttcttttttggatttcctttcc
ctgcacatccattgcttctgtgtttctccaatgtatgcttggtatccata
tcctggggctggggctctcctagggtagctgaggctctctagggtagctg
agctctctagggtagctgagctcttcctagatagctgagcttcctctggg
tagctgagctctcctgggtagctgagctctctggtagctgaagctctcta
gggagctgagcctctcctggtgagctgaggcctcctctaaggtaactgag
cttctggggtacgtgaagcttctaggtagctgtagaggctctctt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_60552389_60553152
seq2: B6Ng01-121E01.b_49_814

seq1  GAATTCCACCATTGTCCTGATTATGACACATGAACATGTCCAGAGCTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACCATTGTCCTGATTATGACACATGAACATGTCCAGAGCTTCC  50

seq1  CTTTAATTCCAGGGGCTTCCATCTCTGGGCCTGACATGGCTACTCTAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAATTCCAGGGGCTTCCATCTCTGGGCCTGACATGGCTACTCTAGCC  100

seq1  AATAGGTCAGGGGAAATGTTTTGGGAAACACATCCACATTGCTAGGGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTCAGGGGAAATGTTTTGGGAAACACATCCACATTGCTAGGGAGG  150

seq1  GGTGGCAAACAATACATTTTATTGACCAGAACTTAGTCAGGTGGTTATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGCAAACAATACATTTTATTGACCAGAACTTAGTCAGGTGGTTATGC  200

seq1  CAAGATACAAAGCAGTCGAAGGAATATAATTGCTAATTAGTTGGTCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATACAAAGCAGTCGAAGGAATATAATTGCTAATTAGTTGGTCATGT  250

seq1  AGCCATCTAAAACTGGATCAGGTATAATCAAATAAAGGAGACTGGATAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCTAAAACTGGATCAGGTATAATCAAATAAAGGAGACTGGATAGT  300

seq1  GATTGACAGTTCGCATTAGAACTGCCGAGACTAATGGCTTTGAGGGCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGACAGTTCGCATTAGAACTGCCGAGACTAATGGCTTTGAGGGCCCA  350

seq1  GCCCTAATGGATATCTACACCAACCCCCTCAGGGCTCAGGGAACATCTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAATGGATATCTACACCAACCCCCTCAGGGCTCAGGGAACATCTTG  400

seq1  GAGGAGACAGTGAAAAGGATACAAAAGCCAGAGACTGGGGCAGAGGACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGACAGTGAAAAGGATACAAAAGCCAGAGACTGGGGCAGAGGACTG  450

seq1  TGGATTGCTGGGGAAGAGGGTCTTTTGGGCATGCTATACAGTCATGAACC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTGCTGGGGAAGAGGGTCTTTTGGGCATGCTATACAGTCATGAACC  500

seq1  CCTGGCAGCTATGGCTACCTTCACAACACCCACACAAAGGTCAGGCCAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCAGCTATGGCTACCTTCACAACACCCACACAAAGGTCAGGCCAAT  550

seq1  AGAATCAGTCAACATTCCAGCAGGCAGCACAGCACTAACTGGACTCAGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAGTCAACATTCCAGCAGGCAGCACAGCACTAACTGGACTCAGTG  600

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGACAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGAGAGAGAGAGACAGAGAGAGAGAG  650

seq1  AGACAGAGAGAG-AGAGAGACAGAGACAGAGACAGAGAGACAGAGAGACA  699
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AGACAGAGAGAGAAGAGAGACAGAGACAGAGACAGAGAGACAGAGAGACA  700

seq1  -GAGACAAAAGAGAGACAGACAGAGACAGAGAGAGCTAGTGTGTGTGTGT  748
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAAAAGAGAGACAGACAGAGACAGAGAGAGCTAGTGTGTGTGTGT  750

seq1  GAGAGAGAGAGAAAGA  764
      ||||||||||||||||
seq2  GAGAGAGAGAGAAAGA  766

seq1: chr9_60709933_60711602
seq2: B6Ng01-121E01.g_66_1260 (reverse)

seq1  AAGAGAGCCTCAGCTACCCCAGGAGAGCCTCAGCTACCCCAGGAGAGCCT  50
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCTACCCCAGGAGAGCCTCAGCTACCCCAGGAAAGCCTCAGCTACCCC  100
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGAGCCTCAGCTACCCTAGGAGAGCCTCAGCTACCCTAGGAGAGCCT  150
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCTACCGTAGGAGAGCCTCAGCTACCCCAAGAGAGCCTCAGCTACCCC  200
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAGAGCCTCAGCTACCCCAAGAGAGCCTCAGCTACCCCAAGAGACCCT  250
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCTACCCTAGGAGAGCCTCAGCTACCCTAGGAGAGCCTCAGCTACCCT  300
                                                        
seq2  --------------------------------------------------  0

seq1  AGGAGAGCCTCAGCTACCCTAGGAGAGCCTCAGCTACCGTAGGAGAGCCT  350
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCTACCCCAAGAGAGCCTCAGCTACTCCAGGAGAGCCTCAGCTACCCC  400
                                                        
seq2  --------------------------------------------------  0

seq1  AAGAGAGCCTCAGCTACCCCAAGAGAGCCTCAGCTACCCTAGGAGAGCCT  450
                                                        
seq2  --------------------------------------------------  0

seq1  CAGCTACCCTAGGAGAGCCT---CAGCTACCCTAGGAGAGCCTCAGCTAC  497
                | ||||||||   |||||| |||||   ||| |||  |||
seq2  ----------AAGAGAGCCTCTACAGCTA-CCTAG--AAGCTTCACGTAC  37

seq1  CCCAGGAGAGCCTCAGCTACCCTAGGAGA-GCCTCAGCTACCCCAGGAGA  546
      ||||| ||   ||||| |||| |||  || ||||||||| | ||||||||
seq2  CCCAGAAG---CTCAGTTACCTTAGAGGAGGCCTCAGCT-CACCAGGAGA  83

seq1  GCCTCAGCTACCCTAGGAGAGCCTCAGCTACCCCAGGAGAGCCTCAGCTA  596
      | ||||||| ||||| |||||| |||||||||    ||||| ||||||||
seq2  GGCTCAGCT-CCCTA-GAGAGCTTCAGCTACC---AGAGAG-CTCAGCTA  127

seq1  CCCCAGGAGAGCCTCAGCTACCCCAGGAGAGCCTCAGCTATCCTAGG-AG  645
       |||||||||| |||||||| |||||  ||  ||||||||| ||||| ||
seq2  -CCCAGGAGAG-CTCAGCTA-CCCAGAGGAAGCTCAGCTAT-CTAGGAAG  173

seq1  AGCCTCAGCTACCCTAGGAGAGCCTCAGCTACCCTAGGAGAGCCTCAGCT  695
      || ||||||||||||| ||||| ||||||||||||| |||||||||||||
seq2  AG-CTCAGCTACCCTA-GAGAG-CTCAGCTACCCTA-GAGAGCCTCAGCT  219

seq1  ACCCTAGGAGAGCCCCAGCCCCAGGATATGGATACCAAGCATACATTGGA  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTAGGAGAGCCCCAGCCCCAGGATATGGATACCAAGCATACATTGGA  269

seq1  GAAACACAGAAGCAATGGATTGTGCAGGGAAAGGAAATCCAAAAA--GAA  793
      ||||||||||||||||||| |||||||||||||||||||||||||   ||
seq2  GAAACACAGAAGCAATGGA-TGTGCAGGGAAAGGAAATCCAAAAAAGAAA  318

seq1  AACTCTCCACTGTCCACTGTTAGCATTATCCATTAGACAAGAGGATGTTT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCTCCACTGTCCACTGTTAGCATTATCCATTAGACAAGAGGATGTTT  368

seq1  TATGTAGGAATTAAAAATAGGATGTTTAAAGAGGGAACATTCTGATTCCA  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGGAATTAAAAATAGGATGTTTAAAGAGGGAACATTCTGATTCCA  418

seq1  AAAATAAAACTGGAGACGTGTCCCATAACCTCTACAAAGGTAGGGACTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAAACTGGAGACGTGTCCCATAACCTCTACAAAGGTAGGGACTTG  468

seq1  GTGAGTGTGGAGAACAGGAGGCAGAGCGTGGGAGAGCTCAGCCTCTGAGC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTGTGGAGAACAGGAGGCAGAGCGTGGGAGAGCTCAGCCTCTGAGC  518

seq1  TGATAGGCATCCCACAAAGAGAGCAGAGCGAGGAAGCCAGCACTCGGACT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGCATCCCACAAAGAGAGCAGAGCGAGGAAGCCAGCACTCGGACT  568

seq1  GAAGATTGTTGACGAAGGCGGGTGAGTCTGGAGACGCGTGATTCAAACAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTGTTGACGAAGGCGGGTGAGTCTGGAGACGCGTGATTCAAACAT  618

seq1  CAAGCTGCTCCTGCAGCTCACAGGACAGACGTGGTACCCAGAGACGGGTT  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCTCCTGCAGCTCACAGGACAGACGTGGTACCCAGAGACGGGTT  668

seq1  TCCTCACACCCTTGTCCCAGTTTTAAGGACACACCCCACTCCTTTCCAAG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACACCCTTGTCCCAGTTTTAAGGACACACCCCACTCCTTTCCAAG  718

seq1  CTGTTTCCCAGGTTTATGCTCACTAAGGTAAACGTTCAAGAATTAAAACG  1243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTCCCAGGTTTATGCTCACTAAGGTAAACGTTCAAGAATTAAAACG  768

seq1  TGTTTCTTCTTCTTAACCTTAGGAAGTAATGGTCGCAGATGATCTGGAAA  1293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCTTCTTAACCTTAGGAAGTAATGGTCGCAGATGATCTGGAAA  818

seq1  GCGAGGTAGGCTGCCACGTTTTATTTTAAAACTTGTGTGTGTCTTGTAAA  1343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAGGTAGGCTGCCACGTTTTATTTTAAAACTTGTGTGTGTCTTGTAAA  868

seq1  TAGAGACTGGGACTGAAGTGGAGACTCAGGTCCTCACTGAGAAGGGCAGA  1393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACTGGGACTGAAGTGGAGACTCAGGTCCTCACTGAGAAGGGCAGA  918

seq1  AGCACATGTTCCTATTTCAAAGCAGATGTTTACCGCATCTCAGGCACAGG  1443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGTTCCTATTTCAAAGCAGATGTTTACCGCATCTCAGGCACAGG  968

seq1  GTCAGCTTACTCTATTTCCCTCCCATTTCAGAGAGAAAAGCTGAAGTCCC  1493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGCTTACTCTATTTCCCTCCCATTTCAGAGAGAAAAGCTGAAGTCCC  1018

seq1  TTTTGGCGGCTAAAGAAAAGCAACACGAAGAAAGCTTAAGAACCATCGAG  1543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGGCGGCTAAAGAAAAGCAACACGAAGAAAGCTTAAGAACCATCGAG  1068

seq1  GCCCTGAAAAACAGATTTAAATATTTTGAGGTACAAAGAAGTTTAAATTA  1593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAAAAACAGATTTAAATATTTTGAGGTACAAAGAAGTTTAAATTA  1118

seq1  TTTTCTTTTAGTCTCTGTCTTCACAGTGAATAGCGGGAAGGGGCCTGGTG  1643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTTAGTCTCTGTCTTCACAGTGAATAGCGGGAAGGGGCCTGGTG  1168

seq1  TCGGAATTGAACTTGAATTATGAATTC  1670
      |||||||||||||||||||||||||||
seq2  TCGGAATTGAACTTGAATTATGAATTC  1195