BAC Information

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BAC

Clone NameB6Ng01-121G20
Chromosome9 (Build37)
Map Location 66,403,841 - 66,545,579
singlet/doubletdoublet
Overlap geneUsp3
Upstream genePlekhq1, Pif1, LOC100041121, Rbpms2, Oaz2, Zfp609, LOC100041180, Trip4, 2810417H13Rik, Csnk1g1, Ppib, Snx22, Snx1, 5730536A07Rik, Dapk2, Herc1, Fbxl22
Downstream geneCar12, Aph1b, LOC623488, Aph1c, Rab8b, Rps27l, Lactb, Tpm1, Tln2, LOC100041390, LOC100040253
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-121G20.bB6Ng01-121G20.g
ACCDH925114DH925115
length1,1931,027
definitionDH925114|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G20, 5' end.DH925115|Mus musculus domesticus DNA, BAC clone: B6Ng01-121G20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,544,377 - 66,545,579)(66,403,841 - 66,404,416)
sequence
gaattctaactggaaacaacataaagcaaattagactatctgcattgagt
gggctcccggagcacaaaccaccttgctttcaatgagacaaaatgagaaa
aatacctcgagtcaatcatacagatagatgaacaaccaactcaaagagac
tctcaccacattttgcaagctaaaaagcaatacaaataaataaatcctca
tttcagttaatggtgacacctagtggcatgtaaaactggggggtttcctt
gccgtaaatgactttgttttacatgttaggcacaggtatgttttgtatca
gtgatgggtgctgctcccataacaggattggtagttgaggccagagacca
tttaggctcaggtagatcggtggccctgcaggaacccttcagaaggaccc
agcatagtacagcatagtactacaggtggaagaccctccctgctggtgat
acttgaatcattcaatagatgctcttggctggctgtgctcctcaacattg
tctcaccacacacacacacacacacacacacacacactcctctcctttcc
tactcttctcgtcctcctcctctgcttgtgttcatgatgcctcctcagaa
aacatagcaagcacacaactacactacccggcatgggagccactatccca
catacagatggataaaaattagaaataatttaaccagctaagatgtaaat
tctagtccctccatctcattagacagatctcagatgcaggagtaatagcg
gcatacccatgggagtgcggctaggaccgtcatgtctggcatgtcctcac
tgtaccaactcctcttggaagcaccctctcctgttctcttccttcacaac
tcttgtcctcaggtggccactcgtgagtctgcctgacccctccacacctt
ccctccctgcctgctctctccagtttatgggtagtttcctcctcgctgta
tattatatgtaaactcattaagtgaccttgccaccgtgagcacaaactat
ataatcacatgggacagtttacccaggactgtgattcacagcatcttgtt
ttccaagcatcagaaccacatcaaaaatatttttaaactccacacatcaa
cacagcatttaaacaatttaacccagaacgttttcttttttatccatagg
ttctggcttttatttgtctacactaaagtaacttaaaaatgaa
gaattctttatttagatctgtaccccatttttaatagggttatttggttc
tctggagtctacctttttgagttctttgtatatattggatattagccctc
tatcggatgtaggattagtaaagatcttttcctaatctgttggttgctgt
tttatcttattgacaatgtcctttaccttacaggtaaagctttgcaattt
aatgaggttccacttgttgattcttgatcttagagcatatgccattggtg
ttctgttcaggaaaatttcccacgcccatgtgcaagaaggctcttccccc
actttctcttctattagtttctgtgattctgattttatatggaggtcctt
gatacacttggacttgagctttgtacaaggagataagaatggatcgatct
gcattcctctacatgctaacctccagttgaaccaataccatttgttgaaa
atgctgtctttttccccgttggatggttttatttagctgctctgtcaaag
atcaagtgaccataggtgtgtgggttcatttctgggtcttcaattctatt
tcactgatctccctgcctgtttctgtactaataccatgcagtttttttaa
tcagcattgctctgtactatggcttgaggtcaggaatggtgattcctcca
gaagtttttttattgttgagaaaattcgctatcctgggttttgttttgtt
ttgtttttttgttattccaagtgaattcaaaaatttctctttctaactcc
atgaaaaattgagttggtttttgacggggatttcataaatctgtagattg
cttttcatcaagatgaccatttttattatattaatcctgccaatccctcc
ttgtgtggagtttccatctactatcctttgtagggctggatttgtgaaaa
tatgtgtaaatttcttttttactcattgttagtagtttcataaaactagg
ttgtttcaatacttataaatgtacttttgcttaagataaaaataatctgg
gggtttcttttggtattaatgtggcta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_66544377_66545579
seq2: B6Ng01-121G20.b_48_1240 (reverse)

seq1  TTCATTTTTAAAGTTACTTTAGTGTAAGACAAAATAAAAAGGCAGAAACC  50
      ||||||||| ||||||||||||||| |||||||   ||||| ||| ||||
seq2  TTCATTTTT-AAGTTACTTTAGTGT-AGACAAA--TAAAAGCCAG-AACC  45

seq1  TATGGATTAAAAAAGAAAAACGTCTGTGGTATAATTGTTTTAAATGCTGT  100
      |||||| ||||||||||||   |||| |||  ||||| ||||||||||||
seq2  TATGGA-TAAAAAAGAAAACGTTCTG-GGTTAAATTG-TTTAAATGCTGT  92

seq1  GTTGATGTGTTGAGTTTAAAAATATTTTTGATGT-GTTCTGATGCTTGGA  149
      |||||||||| ||||||||||||||||||||||| |||||||||||||||
seq2  GTTGATGTGTGGAGTTTAAAAATATTTTTGATGTGGTTCTGATGCTTGGA  142

seq1  AAACAAGATGCTGTGAATCACAGTCCTGGGTAAACTGTCCAATGTGATTA  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AAACAAGATGCTGTGAATCACAGTCCTGGGTAAACTGTCCCATGTGATTA  192

seq1  TATAGTTTGTGCTCACGGTGGCAAGGTCACCTTAATGAGTTTACATAATA  249
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  TATAGTTTGTGCTCACGGTGGCAAGGTCA-CTTAATGAGTTTACAT-ATA  240

seq1  ATATACAGCGAGGAGGAAACTACCCAATAAACTGGAGAGAGCAGGCAGGG  299
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ATATACAGCGAGGAGGAAACTACCC-ATAAACTGGAGAGAGCAGGCAGGG  289

seq1  AGGGAAGGTGTGGAGGGGTCAGGCAGACTCACGAGTGGCCACCTGAGGAC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAGGTGTGGAGGGGTCAGGCAGACTCACGAGTGGCCACCTGAGGAC  339

seq1  AAGAGTTGTGAAGGAAGAGAACAGGAGAGGGTGCTTCCAAGAGGAGTTGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTTGTGAAGGAAGAGAACAGGAGAGGGTGCTTCCAAGAGGAGTTGG  389

seq1  TACAGTGAGGACATGCCAGACATGACGGTCCTAGCCGCACTCCCATGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGAGGACATGCCAGACATGACGGTCCTAGCCGCACTCCCATGGGT  439

seq1  ATGCCGCTATTACTCCTGCATCTGAGATCTGTCTAATGAGATGGAGGGAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCGCTATTACTCCTGCATCTGAGATCTGTCTAATGAGATGGAGGGAC  489

seq1  TAGAATTTACATCTTAGCTGGTTAAATTATTTCTAATTTTTATCCATCTG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATTTACATCTTAGCTGGTTAAATTATTTCTAATTTTTATCCATCTG  539

seq1  TATGTGGGATAGTGGCTCCCATGCCGGGTAGTGTAGTTGTGTGCTTGCTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGGATAGTGGCTCCCATGCCGGGTAGTGTAGTTGTGTGCTTGCTA  589

seq1  TGTTTTCTGAGGAGGCATCATGAACACAAGCAGAGGAGGAGGACGAGAAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTCTGAGGAGGCATCATGAACACAAGCAGAGGAGGAGGACGAGAAG  639

seq1  AGTAGGAAAGGAGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGAAAGGAGAGGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGT  689

seq1  GAGACAATGTTGAGGAGCACAGCCAGCCAAGAGCATCTATTGAATGATTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAATGTTGAGGAGCACAGCCAGCCAAGAGCATCTATTGAATGATTC  739

seq1  AAGTATCACCAGCAGGGAGGGTCTTCCACCTGTAGTACTATGCTGTACTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATCACCAGCAGGGAGGGTCTTCCACCTGTAGTACTATGCTGTACTA  789

seq1  TGCTGGGTCCTTCTGAAGGGTTCCTGCAGGGCCACCGATCTACCTGAGCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGGGTCCTTCTGAAGGGTTCCTGCAGGGCCACCGATCTACCTGAGCC  839

seq1  TAAATGGTCTCTGGCCTCAACTACCAATCCTGTTATGGGAGCAGCACCCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGTCTCTGGCCTCAACTACCAATCCTGTTATGGGAGCAGCACCCA  889

seq1  TCACTGATACAAAACATACCTGTGCCTAACATGTAAAACAAAGTCATTTA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGATACAAAACATACCTGTGCCTAACATGTAAAACAAAGTCATTTA  939

seq1  CGGCAAGGAAACCCCCCAGTTTTACATGCCACTAGGTGTCACCATTAACT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAAGGAAACCCCCCAGTTTTACATGCCACTAGGTGTCACCATTAACT  989

seq1  GAAATGAGGATTTATTTATTTGTATTGCTTTTTAGCTTGCAAAATGTGGT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATGAGGATTTATTTATTTGTATTGCTTTTTAGCTTGCAAAATGTGGT  1039

seq1  GAGAGTCTCTTTGAGTTGGTTGTTCATCTATCTGTATGATTGACTCGAGG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTCTCTTTGAGTTGGTTGTTCATCTATCTGTATGATTGACTCGAGG  1089

seq1  TATTTTTCTCATTTTGTCTCATTGAAAGCAAGGTGGTTTGTGCTCCGGGA  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTCTCATTTTGTCTCATTGAAAGCAAGGTGGTTTGTGCTCCGGGA  1139

seq1  GCCCACTCAATGCAGATAGTCTAATTTGCTTTATGTTGTTTCCAGTTAGA  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCACTCAATGCAGATAGTCTAATTTGCTTTATGTTGTTTCCAGTTAGA  1189

seq1  ATTC  1203
      ||||
seq2  ATTC  1193

seq1: chr9_66403841_66404416
seq2: B6Ng01-121G20.g_528_1090

seq1  CCCGTTGGATGGTTTTATTTAGCTGCTCTGTCAAAGATCAAGTGACCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGTTGGATGGTTTTATTTAGCTGCTCTGTCAAAGATCAAGTGACCATA  50

seq1  GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTTCACTGATCTCCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTGTGGGTTCATTTCTGGGTCTTCAATTCTATTTCACTGATCTCCCT  100

seq1  GCCTGTTTCTGTACTAATACCATGCAGTTTTTTTAATCAGCATTGCTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTTTCTGTACTAATACCATGCAGTTTTTTTAATCAGCATTGCTCTG  150

seq1  TACTATGGCTTGAGGTCAGGAATGGTGATTCCTCCAGAAGTTTTTTTATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGGCTTGAGGTCAGGAATGGTGATTCCTCCAGAAGTTTTTTTATT  200

seq1  GTTGAGAAAATTCGCTATCCTGGGTTTTGTTTTGTTTTGTTTTTTTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAGAAAATTCGCTATCCTGGGTTTTGTTTTGTTTTGTTTTTTTGTTA  250

seq1  TTCCAAGTGAATTCAAAAATTTCTCTTTCTAACTCCATGAAAAATTGAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAGTGAATTCAAAAATTTCTCTTTCTAACTCCATGAAAAATTGAGT  300

seq1  TGGTTTTTGACGGGGATTTCATAAAATCTGTAGATTGC-TTTCATCAAGA  349
      |||||||||||||||||||||| ||||||||||||||| |||||||||||
seq2  TGGTTTTTGACGGGGATTTCAT-AAATCTGTAGATTGCTTTTCATCAAGA  349

seq1  TGACCATTTTTATTATATTAATCCTGCCAATCCCTCCTTGTGTTGGAGTT  399
      |||||||||||||||||||||||||||||||||||||||||| ||||| |
seq2  TGACCATTTTTATTATATTAATCCTGCCAATCCCTCCTTGTG-TGGAG-T  397

seq1  TTCCATCTACTATCCTTTGTAGGGCTGGATTTGTGGAAAAATATTGTGTA  449
      |||||||||||||||||||||||||||||||||||  |||||| ||||||
seq2  TTCCATCTACTATCCTTTGTAGGGCTGGATTTGTG--AAAATA-TGTGTA  444

seq1  AATTTCTTTTTTACTTCATTGTTAGTAGTTTCATTAAAACTAGGGTTTGT  499
      |||||||||||||| |||||||||||||||||| ||||||||||  ||| 
seq2  AATTTCTTTTTTAC-TCATTGTTAGTAGTTTCA-TAAAACTAGG--TTG-  489

seq1  TTTCAATACTTATAAAATGTACTTTTGCTTTTAAGAT-AAAATAATCT-G  547
      ||||||||||||| ||||||||||||||  ||||||| |||||||||| |
seq2  TTTCAATACTTAT-AAATGTACTTTTGC--TTAAGATAAAAATAATCTGG  536

seq1  GGGTTTCTTTTGGTAATTAATGTTGGCTA  576
      |||||||||||||| ||||||| ||||||
seq2  GGGTTTCTTTTGGT-ATTAATG-TGGCTA  563