BAC Information

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BAC

Clone NameB6Ng01-122B20
Chromosome9 (Build37)
Map Location 110,203,246 - 110,203,742
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC668758, EG382156, Fbxw16, Fbxw19, LOC635668, Fbxw15, EG382106, E330001B16Rik, C85627, EG382109, 1700124P09Rik, Spink8, 3000002C10Rik, Nme6, Camp, Cdc25a, LOC100043782, Mtap4, LOC100049540, Dhx30, Smarcc1, Rn4.5s-ps2, Cspg5
Downstream geneTmem103, Scap, Ptpn23, Ngp, Klhl18, Kif9, Setd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122B20.bB6Ng01-122B20.g
ACCDH925628DH925629
length1,236712
definitionDH925628|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B20, 5' end.DH925629|Mus musculus domesticus DNA, BAC clone: B6Ng01-122B20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttatttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcgattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttaaccttagtacaaggagataagtatggatcgattcgc
attcttctacacgataacaaccagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtctggcatggtgattccgccagaagttcttt
tatccttgagaagactttttgctatcctaggttttttgttattccagaca
aatttgcaaattgctccttccaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccatgagcatgggagatctttccatctt
ctgagatcttctttaatttctttcttcagagatttgaagtttttatcata
cagatctttcacctccttagttagagtcacgccagatatttatattattt
gtgactattgagacggtgttgtttccctatttcttctcagctgttattct
ttgtttagagaaagccattgacttgtttgagtttatttatatccagctac
ttcacgagctggttttcagttagaagttctcttggagaaattttagggtc
cttaatatactatcctatcactgcaaaggtgaattgactctctctttcca
attggattctggatccttgtgtgttcgaatggcttgccatactttcagta
tctatagtattgaaaacggatcacgtatatagcgta
gaattccaacagtgagtccttggttctacacccttccctttttgggaaac
cattactcttttaatctcattgctcattatgtatctgtctaggttgctta
tgagcctcttggttcggttttggtacatcatatgtggctagcaatatatt
cacttctaagttatgtatttattggaacatatattttcaaaataattgcc
tatgatcctctgaatcagaagattcagatggtgggggctggagagatagc
tcagcggttaagagcactgggtgttcttccagaggccctgaattcaattc
tctgcaactacaaggtggctcacaaccatcgtaatgggatctgatggtct
cttctggtgtgcactcagatataaataaataaaaatgtaaaaaacagttt
taaaaaagattcagatggtaccgattggaaaagctcattttctctctctg
attctattacgttgggttcccttcttccctttgggttagtttggctatgg
gattctcaatcttattaacttgttcaaagaacgaactctttgtttcaatg
gtttttttatcttattcttttagcctctatttcattaactttttccttaa
ttctcattacttcttttcttctgttagatttgagtttggtttggtatatt
gttttctaacaccttgagatgaatcattaggtaatttattgaaacctctc
ttgtttttttaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_110203246_110203742
seq2: B6Ng01-122B20.g_380_778 (reverse)

seq1  TTAAAAAAACAAGAGACAAAGAACAAAACAAACAAAGACCTGGTCGATTA  50
      |||||||||||||||       |     |||  ||  ||||  | |||| 
seq2  TTAAAAAAACAAGAG-------AGGTTTCAATAAATTACCTAAT-GATTC  42

seq1  GTTTGATAGTTTGTGATATTACTTATGTTCTGAA--AAAGTGTAATAAAA  98
       | | |  || |  || |  |   || | |  ||  ||| |  |||  ||
seq2  ATCTCAAGGTGTTAGAAAACA---ATATACCAAACCAAACTCAAATCTAA  89

seq1  ACAAACAAACAAA--ACTAGGCCTTTAGGCCCAGGCTTGAGAATGTGACC  146
         || |||  ||  | |  |  || |||   | | |    ||||  |  
seq2  CAGAAGAAAAGAAGTAATGAGAATTAAGGAAAAAGTT----AATGAAA--  133

seq1  TTTGTGACTCAATGCTCCAAGGCATGCTAATCA-TAAAACAGATAGCGAC  195
       | | | || || |    |||  |    || || | ||||| | ||    
seq2  -TAGAGGCTAAAAG-AATAAGATAAAAAAACCATTGAAACAAAGAG----  177

seq1  ATTCCTCCGCCCACCTGCTTCCTGGGATCAGGGAGTTTTCGTT---CAAA  242
       ||| | |    | |   ||  |  |||    |||  | |  |   ||||
seq2  -TTCGTTCTTTGAACAAGTTAATAAGAT---TGAGAATCCCATAGCCAAA  223

seq1  GAAACTCAACCTGACCGCTCCTGGAACCCACTATACAAATGTGCTATTGT  292
        ||| |||   ||        ||||||||    ||            ||
seq2  CTAACCCAAAGGGA---AGAAGGGAACCCA----AC------------GT  254

seq1  TAGGGGCTCACAGAAGCTGTCATGAGAAATAACCCGCACAATTACCA---  339
       |  |  ||| |||         |||||  ||   ||    || |||   
seq2  AATAGAATCAGAGA---------GAGAA--AATGAGC---TTTTCCAATC  290

seq1  GGTATTCCTTGTGACTCTTGTAACTTTACACTTCCTCGTGACTCTTTTTT  389
      ||||  || | ||| ||||     |||| |          ||| ||||||
seq2  GGTA--CCATCTGAATCTT----TTTTAAA----------ACTGTTTTTT  324

seq1  TTTTTTTTTTTAAGATTTATTTATTTATTATATGTAAGTACACTGTAGCT  439
         ||          |||||||||   |||||| | |||           
seq2  ACATT----------TTTATTTAT---TTATATCTGAGT-----------  350

seq1  GTCCTCAGACACTCCAGAAGAGGGCGTCAGATCTCATTACGGATGGTTGT  489
               ||| |||||||||  | ||||||| |||||| |||||||||
seq2  --------GCACACCAGAAGAGACCATCAGATCCCATTAC-GATGGTTGT  391

seq1  GAGCCACC  497
      ||||||||
seq2  GAGCCACC  399