BAC Information

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BAC

Clone NameB6Ng01-122D06
Chromosome9 (Build37)
Map Location 62,907,005 - 63,053,805
singlet/doubletdoublet
Overlap geneLOC100039976, Ppia-ps9_818.1, Lbxcor1, Map2k5
Upstream geneGlce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1
Downstream gene2300009A05Rik, Iqch, LOC621763, 2310007F21Rik, Smad3, LOC100040009, Smad6, 2600006L11Rik, Lctl, Zwilch, Rpl4, Snapc5, Map2k1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122D06.bB6Ng01-122D06.g
ACCDH925692DH925693
length6831,067
definitionDH925692|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D06, 5' end.DH925693|Mus musculus domesticus DNA, BAC clone: B6Ng01-122D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,907,005 - 62,907,687)(63,052,723 - 63,053,805)
sequence
gaattcttctgtgttggcactcccgccccactctccctggaggctgagct
gctgggatcaaagcggctgaagtgggtgccactccactgaattaagatct
gagatgccggataaacccagcctgcacttctgggtcctcctcccacctcc
tgtcacctaggcaaccgggaggagcctaggagcctgttccttcctccctg
cccctcgctacccactcagacgcccaggcccacggttcttccctaggact
cagcccacagctcctctgaatctcagcttctggagagttccatcctctca
actcctttttgtgcacacagaaattagattccaagcagaggggccccaac
ccgttaaaacgatcccccgtttgcatgaagaatttgcctgtcttcctggc
agaggagctacaggcagagtttgacctccaaggaacagcatgtccaggca
tctactgcgagggcagaggacagtcagggagcattgggttgcagagtctc
ctagaataccccacccagctagcaaccagagcagaaggcagcaggttgcc
agatgagggagaggagctgagaccagggccagaagatcctggagttcatt
ttctgtagaatctgggagttaaagacttattttatttttaaatgtgtgtg
tgagtgttgtgtgtgtgtgtatgagagagagag
gaattcaaagactatatgggaacaaggggaaccacaggtaggagtcgctg
aataattacctctagagcagcctgagcgggaggcttcccacgagggcgag
cccatttaatggtccctaaaactcaatcttgtgcatgtcagtggtcacgc
ttgattatccgcagcagtgtttttatgaaatgcatcgggacgctgcagag
agtaaggacagtagtgggctgtactttgtaaatgaaaccccattgcgatg
tggccaagtatgctgttgcggctgtgcctaagctgcaggaaaggaagctt
tgtgactgtgtgcagggggttcacgcaggtacctctaaataatgctgctc
cctgtagtttaagagtagcaagaacccaaaattaaaagagcaaaggatgc
ttgttggctttgggaaaggtgccacctcagatacagttgagaagacaaac
tcactttccacttctgttttcaaagaatttctaaagcacctgatctttgc
catgtctagaaagtctttatgtaaatcttgtaatgatagcaaaataagtt
tagtaactgagttgggttcatcgtgacattgatggcaaacatctttctct
tttcatcataatattgaggaacttctaaagtgtatgtaactgaaaagata
tctgtgatgtggtttcagtcacctagagacagattcctttggtccatcca
tgtgtccggtgtgggctttataaaccgtctggcggtggtgttctcttggc
taacatctggcggtagtgctctcttggctaacatctggcggtagtgctct
cttggctagcagctgcttcccttgaccgaagggtttacgggcagggtggg
tgtttccgttgtgagaattcaagcctttagcccctggttccagggccatc
tgagacaagttaaatgaactgctactgtcagcagaccagcagacagactt
cacactaaatgcccacacgtgtattgtcacgtctgcaacccagaaatgga
gtgaccccgggtgaattgatcatcctcctacctccacttcagcccagttg
agtgcgttggtggagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_62907005_62907687
seq2: B6Ng01-122D06.b_49_731

seq1  GAATTCTTCTGTGTTGGCACTCCCGCCCCACTCTCCCTGGAGGCTGAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGTGTTGGCACTCCCGCCCCACTCTCCCTGGAGGCTGAGCT  50

seq1  GCTGGGATCAAAGCGGCTGAAGTGGGTGCCACTCCACTGAATTAAGATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGATCAAAGCGGCTGAAGTGGGTGCCACTCCACTGAATTAAGATCT  100

seq1  GAGATGCCGGATAAACCCAGCCTGCACTTCTGGGTCCTCCTCCCACCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCCGGATAAACCCAGCCTGCACTTCTGGGTCCTCCTCCCACCTCC  150

seq1  TGTCACCTAGGCAACCGGGAGGAGCCTAGGAGCCTGTTCCTTCCTCCCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACCTAGGCAACCGGGAGGAGCCTAGGAGCCTGTTCCTTCCTCCCTG  200

seq1  CCCCTCGCTACCCACTCAGACGCCCAGGCCCACGGTTCTTCCCTAGGACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCGCTACCCACTCAGACGCCCAGGCCCACGGTTCTTCCCTAGGACT  250

seq1  CAGCCCACAGCTCCTCTGAATCTCAGCTTCTGGAGAGTTCCATCCTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCCACAGCTCCTCTGAATCTCAGCTTCTGGAGAGTTCCATCCTCTCA  300

seq1  ACTCCTTTTTGTGCACACAGAAATTAGATTCCAAGCAGAGGGGCCCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCTTTTTGTGCACACAGAAATTAGATTCCAAGCAGAGGGGCCCCAAC  350

seq1  CCGTTAAAACGATCCCCCGTTTGCATGAAGAATTTGCCTGTCTTCCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTTAAAACGATCCCCCGTTTGCATGAAGAATTTGCCTGTCTTCCTGGC  400

seq1  AGAGGAGCTACAGGCAGAGTTTGACCTCCAAGGAACAGCATGTCCAGGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGCTACAGGCAGAGTTTGACCTCCAAGGAACAGCATGTCCAGGCA  450

seq1  TCTACTGCGAGGGCAGAGGACAGTCAGGGAGCATTGGGTTGCAGAGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTGCGAGGGCAGAGGACAGTCAGGGAGCATTGGGTTGCAGAGTCTC  500

seq1  CTAGAATACCCCACCCAGCTAGCAACCAGAGCAGAAGGCAGCAGGTTGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAATACCCCACCCAGCTAGCAACCAGAGCAGAAGGCAGCAGGTTGCC  550

seq1  AGATGAGGGAGAGGAGCTGAGACCAGGGCCAGAAGATCCTGGAGTTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGGAGAGGAGCTGAGACCAGGGCCAGAAGATCCTGGAGTTCATT  600

seq1  TTCTGTAGAATCTGGGAGTTAAAGACTTATTTTATTTTTAAATGTGTGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTAGAATCTGGGAGTTAAAGACTTATTTTATTTTTAAATGTGTGTG  650

seq1  TGAGTGTTGTGTGTGTGTGTATGAGAGAGAGAG  683
      |||||||||||||||||||||||||||||||||
seq2  TGAGTGTTGTGTGTGTGTGTATGAGAGAGAGAG  683

seq1: chr9_63052723_63053805
seq2: B6Ng01-122D06.g_68_1134 (reverse)

seq1  TCCTCCACCCACCCCACTCCACACTGGGCCTGAGTGGAGGTAGTGAAGGA  50
      ||||||| ||| | |||||   |||||||   ||||||||||  | ||||
seq2  TCCTCCA-CCAACGCACTC--AACTGGGCTGAAGTGGAGGTA--GGAGGA  45

seq1  TGATTCAATTTCCACCCGGGGTCACTCCATATCTGGGGTTGCCAGACGTG  100
      ||| ||||||  |||||||||||||||||| ||| |||||| ||||||||
seq2  TGA-TCAATT--CACCCGGGGTCACTCCATTTCT-GGGTTG-CAGACGTG  90

seq1  ACAAATTACACGTGTGGGCATTTTGGTGTGAAGTTCTGTCTGCTGGTCTG  150
      ||||  |||||||||||||| ||| |||||||| ||||||||||||||||
seq2  ACAA--TACACGTGTGGGCA-TTTAGTGTGAAG-TCTGTCTGCTGGTCTG  136

seq1  GCCTGACAGTAGCAGTTCATTTAACTTGTCTCAGATGGCCCTGGAACCAG  200
        ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  --CTGACAGTAGCAGTTCATTTAACTTGTCTCAGATGGCCCTGGAACCAG  184

seq1  GGGCTAAAGGCTTGAATTCTCACAACGGAAACACCCACCCTGCCCGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTAAAGGCTTGAATTCTCACAACGGAAACACCCACCCTGCCCGTAAA  234

seq1  CCCTTCGGTCAAGGGAAGCAGCTGCTAGCCAAGAGAGCACTACCGCCAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCGGTCAAGGGAAGCAGCTGCTAGCCAAGAGAGCACTACCGCCAGA  284

seq1  TGTTAGCCAAGAGAGCACTACCGCCAGATGTTAGCCAAGAGAACACCACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCCAAGAGAGCACTACCGCCAGATGTTAGCCAAGAGAACACCACC  334

seq1  GCCAGACGGTTTATAAAGCCCACACCGGACACATGGATGGACCAAAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGACGGTTTATAAAGCCCACACCGGACACATGGATGGACCAAAGGAA  384

seq1  TCTGTCTCTAGGTGACTGAAACCACATCACAGATATCTTTTCAGTTACAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTAGGTGACTGAAACCACATCACAGATATCTTTTCAGTTACAT  434

seq1  ACACTTTAGAAGTTCCTCAATATTATGATGAAAAGAGAAAGATGTTTGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTTAGAAGTTCCTCAATATTATGATGAAAAGAGAAAGATGTTTGCC  484

seq1  ATCAATGTCACGATGAACCCAACTCAGTTACTAAACTTATTTTGCTATCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTCACGATGAACCCAACTCAGTTACTAAACTTATTTTGCTATCA  534

seq1  TTACAAGATTTACATAAAGACTTTCTAGACATGGCAAAGATCAGGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAAGATTTACATAAAGACTTTCTAGACATGGCAAAGATCAGGTGCTT  584

seq1  TAGAAATTCTTTGAAAACAGAAGTGGAAAGTGAGTTTGTCTTCTCAACTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTCTTTGAAAACAGAAGTGGAAAGTGAGTTTGTCTTCTCAACTG  634

seq1  TATCTGAGGTGGCACCTTTCCCAAAGCCAACAAGCATCCTTTGCTCTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGAGGTGGCACCTTTCCCAAAGCCAACAAGCATCCTTTGCTCTTTT  684

seq1  AATTTTGGGTTCTTGCTACTCTTAAACTACAGGGAGCAGCATTATTTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGGGTTCTTGCTACTCTTAAACTACAGGGAGCAGCATTATTTAGA  734

seq1  GGTACCTGCGTGAACCCCCTGCACACAGTCACAAAGCTTCCTTTCCTGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTGCGTGAACCCCCTGCACACAGTCACAAAGCTTCCTTTCCTGCA  784

seq1  GCTTAGGCACAGCCGCAACAGCATACTTGGCCACATCGCAATGGGGTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAGGCACAGCCGCAACAGCATACTTGGCCACATCGCAATGGGGTTTC  834

seq1  ATTTACAAAGTACAGCCCACTACTGTCCTTACTCTCTGCAGCGTCCCGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAGTACAGCCCACTACTGTCCTTACTCTCTGCAGCGTCCCGAT  884

seq1  GCATTTCATAAAAACACTGCTGCGGATAATCAAGCGTGACCACTGACATG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTCATAAAAACACTGCTGCGGATAATCAAGCGTGACCACTGACATG  934

seq1  CACAAGATTGAGTTTTAGGGACCATTAAATGGGCTCGCCCTCGTGGGAAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGATTGAGTTTTAGGGACCATTAAATGGGCTCGCCCTCGTGGGAAG  984

seq1  CCTCCCGCTCAGGCTGCTCTAGAGGTAATTATTCAGCGACTCCTACCTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCGCTCAGGCTGCTCTAGAGGTAATTATTCAGCGACTCCTACCTGT  1034

seq1  GGTTCCCCTTGTTCCCATATAGTCTTTGAATTC  1083
      |||||||||||||||||||||||||||||||||
seq2  GGTTCCCCTTGTTCCCATATAGTCTTTGAATTC  1067