BAC Information

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BAC

Clone NameB6Ng01-122K22
Chromosome9 (Build37)
Map Location 17,578,707 - 17,579,778
singlet/doubletsinglet
Overlap genenone
Upstream geneEG434373, LOC100040074, LOC100040090, LOC244710
Downstream geneLOC100040508, EG665548, LOC665554, LOC665567, Chordc1, Naalad2, B020006M18Rik, Map1lc3-ps, Mbd3l2, Zfp558, Mbd3l1, Muc16, Olfr24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122K22.bB6Ng01-122K22.g
ACCDH926044DH926045
length1,2261,195
definitionDH926044|Mus musculus domesticus DNA, BAC clone: B6Ng01-122K22, 5' end.DH926045|Mus musculus domesticus DNA, BAC clone: B6Ng01-122K22, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttctggtatagtatttaataattctaacacctgtgatgactttt
cctggttgtcagcttaactatgtctggaatgaactataatacagaaataa
aaggcatatctatgatccagaatttgaggctggaagacacaggcttctga
cttgaatcttgacatggagaacttgaggcatagtggacaagaaatgctaa
gacccaggcaaggtgtaaacacctttaatcccaggagactgaggcaaaca
gatctttgagttcaacgtcagtttgggacaaagtgagttccagatccagg
taaggtgttacatatctttaatctgggttacttcttctgcttgaggtcta
cataaggtcaccataaggtcaagggaagaaggaagattcattttttttgt
ctgcttgcacttacttgccagcgcatctcgtggaatgtacttcttcagaa
ttccagcttatacagaagaccaggtgaaacaactagccttctgagacagc
aaccaagagatctttagacttctcattcagggctacccattgttgcatta
gttgaactgtagactttaagtcattacaatatatttccctcatatgtaga
gacattatataagtttgttgactctagagaaccctgactactataagact
attcttttctttaataccctatacttaaactagaaaagattaatcactat
tttatcttgaaaattaagaaactaaaaatgtagatttttattattaatat
tttatccacttaaacatatgatattctgaaagtgtagtgtaaaatctgaa
aatatttcaaatatatgtatatatctatatacatatatatatgtgtgtgt
gtgtgtgtgtataacctgattgttcttttcaacttgttgtattcatgaca
aataataaataaattcttttaaatatgcataattaatgtaattttcaccc
agatttctaaagagtaatttgggagtattgtttccttcaaattttgggaa
tatagaaagaatatcttctaatagttaggttctttatactgaaaccattc
ttgatatgcattatattcaagcttatttgatgtattcttaatattgaaca
ttttttctggttggcttggcacttaaacttactttaagaaagagaaactt
aggtaaacacatgttacagttaccctctccaggtcgaactctatcttaca
catactgtaaatatatatcaaaggct
gaattcctgatctttccaagaggtttattatgaatctgtgttggatgatc
gtgagatgatcatgtggtttttatccttgagtttgtttatatagtggatt
acgttgatggatttctgtacattaaaccatccctgcatccctgggatgaa
gcctacttgaccatgatggatgattgttttaatgtaatccttggtccagt
ttgcgaaaattttaatgagtatttttgcatcaatatgtataagggaaata
ggtctgaagttctctttctttgctgggtcttcttgtggtttaagtatcag
aataattgtggcttcataaaatgaattgggtagagtacattctgtttcta
ttttgtggagtagtttgaggagaattgaaattccatttttagatcttgga
tgttttttttttcaattctatcacctatttggttgtgtcttcctgtaatt
ctttaagaaatttttgtgtttcctctttaaggacttctatctgtttagca
gtgttttcctgtaattctttaagggatttttgtgcttcttctttaaggtc
ttctacctgtttagcagtgttctcctgtatttctttaagtgagttatttt
ttaaaatattttattaggtattttccttatttatatttccaatgctatcc
aaaaagtcccccataccctccccctcactcccttacccacccactcccaa
tttttgccctggcgttctcctgtactggggcatataaagtttgcaagtcc
aatgggcctctctgagaagagttttgctatcctaggttttttgttattcc
agatgaatttgcaaattgccccttctaattccttgagaattgagttggaa
ttttgatagggaatgcattgaatctgtagattgcttttggcagatagcca
tttttacattgttgatcctgccatccatgagcatggagatctttccatct
ctgagatctttattctttttcagagaacttgagttttatcccacaggatc
tttcactcctagttgaagtcacggcagatattttatattattgtgacctt
gagaagggttccttccctaattcctttctcagcctggttattcttgtgat
gagaggcattgaactggttgattatttattatccagcatttcaccgagcg
gttatccagtaggagtctcctgcgggattattgaggacgccacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_17578707_17579778
seq2: B6Ng01-122K22.b_48_1273

seq1  GAATTCTTCTGGTATAGTATTTAATAATTCTAACACCTGTGATGACTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCTGGTATAGTATTTAATAATTCTAACACCTGTGATGACTTTT  50

seq1  CCTGGTTGTCAGCTTAACTATGTCTGGAATGAACTATAATACAGAAATAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTTGTCAGCTTAACTATGTCTGGAATGAACTATAATACAGAAATAA  100

seq1  AAGGCATATCTATGATCCAGAATTTGAGGCTGGAAGACACAGGCTTCTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCATATCTATGATCCAGAATTTGAGGCTGGAAGACACAGGCTTCTGA  150

seq1  CTTGAATCTTGACATGGAGAACTTGAGGCATAGTGGACAAGAAATGCTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAATCTTGACATGGAGAACTTGAGGCATAGTGGACAAGAAATGCTAA  200

seq1  GACCCAGGCAAGGTGTAAACACCTTTAATCCCAGGAGACTGAGGCAAACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCAGGCAAGGTGTAAACACCTTTAATCCCAGGAGACTGAGGCAAACA  250

seq1  GATCTTTGAGTTCAACGTCAGTTTGGGACAAAGTGAGTTCCAGATCCAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGAGTTCAACGTCAGTTTGGGACAAAGTGAGTTCCAGATCCAGG  300

seq1  TAAGGTGTTACATATCTTTAATCTGGGTTACTTCTTCTGCTTGAGGTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGTGTTACATATCTTTAATCTGGGTTACTTCTTCTGCTTGAGGTCTA  350

seq1  CATAAGGTCACCATAAGGTCAAGGGAAGAAGGAAGATTCATTTTTTTTGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGGTCACCATAAGGTCAAGGGAAGAAGGAAGATTCATTTTTTTTGT  400

seq1  CTGCTTGCACTTACTTGCCAGCGCATCTCGTGGAATGTACTTCTTCAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTGCACTTACTTGCCAGCGCATCTCGTGGAATGTACTTCTTCAGAA  450

seq1  TTCCAGCTTATACAGAAGACCAGGTGAAACAACTAGCCTTCTGAGACAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGCTTATACAGAAGACCAGGTGAAACAACTAGCCTTCTGAGACAGC  500

seq1  AACCAAGAGATCTTTAGACTTCTCATTCAGGGCTACCCATTGTTGCATTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGAGATCTTTAGACTTCTCATTCAGGGCTACCCATTGTTGCATTA  550

seq1  GTTGAACTGTAGACTTTAAGTCATTACAATATATTTCCCTCATATGTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAACTGTAGACTTTAAGTCATTACAATATATTTCCCTCATATGTAGA  600

seq1  GACATTATATAAGTTTGTTGACTCTAGAGAACCCTGACTACTATAAGACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTATATAAGTTTGTTGACTCTAGAGAACCCTGACTACTATAAGACT  650

seq1  ATTCTTTTCTTTAATACCCTATACTTAAACTAGAAAAGATTAATCACTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTCTTTAATACCCTATACTTAAACTAGAAAAGATTAATCACTAT  700

seq1  TTTATCTTGAAAATTAAGAAACTAAAAATGTAGATTTTTATTATTAATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCTTGAAAATTAAGAAACTAAAAATGTAGATTTTTATTATTAATAT  750

seq1  TTTATCCACTTAAACATATGATATTCTGAAAGTGTAGTGTAAAATCTGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCCACTTAAACATATGATATTCTGAAAGTGTAGTGTAAAATCTGAA  800

seq1  AATATTTCAAATATATGTATATATCTATATACATATATATATGTGTGTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTTCAAATATATGTATATATCTATATACATATATATATGTGTGTGT  850

seq1  GTGTGTGTGTATAACCTGATTGTTCTTTTCAACTTGTTGTATTCATGACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTATAACCTGATTGTTCTTTTCAACTTGTTGTATTCATGACA  900

seq1  AATAATAAATAAATTCTTTTAAAATATGCATAATTAATGTAATTTTCACC  950
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAATAAATAAATTCTTTT-AAATATGCATAATTAATGTAATTTTCACC  949

seq1  CAGATTTCTAAAGAGTAATTT-GGAGTATTGTTTCCTTCAAATTTT-GGA  998
      ||||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  CAGATTTCTAAAGAGTAATTTGGGAGTATTGTTTCCTTCAAATTTTGGGA  999

seq1  ATATAGAAAG-ATATC-TCTAATAGTTAGGTTCTTATAACTGAAAACCAT  1046
      |||||||||| ||||| ||||||||||||||||||   ||||||| |  |
seq2  ATATAGAAAGAATATCTTCTAATAGTTAGGTTCTTTATACTGAAACCATT  1049

seq1  CTTGATATGCAATTATATCAAAGGCT------------------------  1072
      |||||||||| |||||||  || |||                        
seq2  CTTGATATGC-ATTATATTCAA-GCTTATTTGATGTATTCTTAATATTGA  1097

seq1  --------------------------------------------------  1072
                                                        
seq2  ACATTTTTTCTGGTTGGCTTGGCACTTAAACTTACTTTAAGAAAGAGAAA  1147

seq1  --------------------------------------------------  1072
                                                        
seq2  CTTAGGTAAACACATGTTACAGTTACCCTCTCCAGGTCGAACTCTATCTT  1197

seq1  -----------------------------  1072
                                   
seq2  ACACATACTGTAAATATATATCAAAGGCT  1226