BAC Information

Click to search

BAC

Clone NameB6Ng01-122O01
Chromosome9 (Build37)
Map Location 19,265,484 - 19,266,567
singlet/doubletsinglet
Overlap genenone
Upstream geneZfp558, Mbd3l1, Muc16, Olfr24, Olfr828, Olfr829, Olfr830, Olfr831-ps1, Olfr832, GA_x5J8B7W6RL5-13870817-13871726, Olfr834, Olfr835, Olfr836, Olfr837, GA_x5J8B7W6RL5-13695863-13696754, Olfr839-ps1, GA_x5J8B7W6RL5-13645512-13646298, Olfr841-ps1, Olfr842-ps1, Olfr843, Olfr845, Olfr1522-ps1, Olfr846, LOC665697, Olfr847, GA_x5J8B7W6RL5-13451244-13452122, Olfr849
Downstream geneOlfr850, Olfr851, Olfr852-ps1, Olfr853, Olfr854, Olfr855, Zfp75, EG624341, LOC665751, Olfr857, Olfr858-ps1, Olfr58, Olfr859, Olfr860, GA_x5J8B7W6RL5-13004417-13003354, Olfr862, Olfr77, EG665823, Olfr863-ps1, Olfr864-ps1, Olfr865-ps1, Olfr866, Olfr867, Olfr868, Olfr869, Olfr870, Olfr871, Olfr872, Olfr39, Olfr873, Olfr18, Zfp560, 4921534A09Rik, EG624824, Zfp26
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-122O01.bB6Ng01-122O01.g
ACCDH926192DH926193
length1,1341,086
definitionDH926192|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O01, 5' end.DH926193|Mus musculus domesticus DNA, BAC clone: B6Ng01-122O01, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagctctgagccccattttttaatggggttattcgatt
ttctggagcccaccttcttgtcttctttatatatattggatattagtgcc
gtatccgatttgagataggtaaagatcctttcccaatctgttggtggtct
ttttgtcttattgatggtgtcttttgccttgcagaagctttggagtttca
tgagctcccatttgttaattctcgatcttacagcacaagccattgctgtt
ctattcagaaattttccccctgtacccatatcttcaaggctttcccccac
tttctcctctataagtttcagtgtctccggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagctaggtatggatcgattctc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgttgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgc
tctacttgtctgtcagtataccagtaacatgcagtttttatcgcaattgc
actgtagtaaaggtttaggtcaggcatggtgatacctccagaggttcttt
tatccttgagaagagtttttgctatcctaggttttttgttattccagatg
aatttgcagattgctctttctaattcgttgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatgttgatcctgccaatccgtgagcatgggagatgtttctatctt
ctgatatcatctttaaattctttcttcagagacttgaacttctgttgtca
cctgaattttgatcttagccattctgactggtgtgaggtggatctcaagg
tgttttgatttgcatttccctgatgattagatgttgaacatttttcagtg
cttctcttccattggtatttccaggtgagaattcttgtttagcttctgag
ccatttttaatggggttattcggatttctggagcccaccttcttggcttc
tttatataaaaatggaatataatgtgggcgatac
gaattcattaaaaacaattcctaatgaaagcttaaaaacaaaaaagaaag
tttgggactttgaatatgactttgaatatgtcataaatcactgaatttga
catggttctctgccttagtctgacctatgaaacacaaatttcactttctc
atttttataatggtagcaactgtggaaatactgggggatgattcagagaa
aaggaataagtaggaaaaagtgacatacgttgggttatgtcacattgtga
acccctgaaattgtgaactgtaaaaatcttgttacagtttggctcagccc
taatacacatctttaaatcaagtgtctattatttactgtaagaaagtact
tgtggtgtgtctcagccttttaaaatattttttactgaatttatttttta
agacttaagcattttctttatatgagtacactgtagcagtcttcaaacac
accagaagagggcatcagatcccattatagatggttgtgagccaccatgt
gttttctgggaattgaactcaggacctttggaagagcacttggagttctt
aaccactgagccatctctccagcccctgcctcagccttaaacacctttaa
tcctatacctaaataaagtaatatcaggtcaagagacagagcaagaaagc
agctgacagggagtgaatgtagtgaatagaaaggagggacattgaaagac
aaagtttttccagtttacaatctcaggttttacagtgtgaacaaatatca
tgcaaaagactaaatataggggcttgtggtggacttcctatcagtttagc
ttttccttttcaataatgtattaatacttaggatgaaaattgatcgtgaa
agttttaaagaagtaggaaaagtgaacagaggatattacaactctaggga
taatggctaagaaatggagaacttattttcaaagtccaatgattaccctg
atagtacaggtgttttactggtgaaaagaaggaaggatataacagagata
aggcataaactttattcccaggagggaaatataaatctattgttaccttt
acactgtttttttacaatagtcacatacaatatttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_19265484_19266567
seq2: B6Ng01-122O01.g_66_1151 (reverse)

seq1  AAAATATTGTATGTGACTTATTTGTATAAAACAGTGT-AAGGTGACATTA  49
      ||||||||||||||||| ||||   | |||||||||| ||||| ||| ||
seq2  AAAATATTGTATGTGAC-TATTGTAAAAAAACAGTGTAAAGGTAACAATA  49

seq1  GTATTATATTT-CCTTCTGTGATATAAGTTTATGCCTTTTCTCTGTATTA  98
      |  |||||||| ||| ||| ||   ||||||||||||| |||||||  ||
seq2  GATTTATATTTCCCTCCTGGGAATAAAGTTTATGCCTTATCTCTGTTATA  99

seq1  TTCCTTCCTTCTTTTCA-CAGTAAAACA-CTGTACTATCAGGGTTATTCA  146
       |||||||||||||||| |||||||||| |||||||||||||| || |||
seq2  -TCCTTCCTTCTTTTCACCAGTAAAACACCTGTACTATCAGGG-TAATCA  147

seq1  TTGGACTTTGAAAATAAG-TCTCCATTTCTTAGCCATTATACCTTAGAGT  195
      |||||||||||||||||| ||||||||||||||||||||| || ||||||
seq2  TTGGACTTTGAAAATAAGTTCTCCATTTCTTAGCCATTAT-CCCTAGAGT  196

seq1  TGTTATATCCTCTGTTCACTTTTCCTACTTCTTTAAACCTTTCACGATCA  245
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTAATATCCTCTGTTCACTTTTCCTACTTCTTTAAAACTTTCACGATCA  246

seq1  ATTTTCATCCTAAGTATTAATACA-TATTGAAAAGGAAAAGCTAAACTGA  294
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATTTTCATCCTAAGTATTAATACATTATTGAAAAGGAAAAGCTAAACTGA  296

seq1  TAGGAAGTCCACCACAAGCCCCTATATTTAGTCTTTTGCATGATATTTGT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTCCACCACAAGCCCCTATATTTAGTCTTTTGCATGATATTTGT  346

seq1  TCACACTGTAAAACCTGAGATTGTAAACTGGAAAAACTTTGTCTTTCAAT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACTGTAAAACCTGAGATTGTAAACTGGAAAAACTTTGTCTTTCAAT  396

seq1  GTCCCTCCTTTCTATTCACTACATTCACTCCCTGTCAGCTGCTTTCTTGC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTCCTTTCTATTCACTACATTCACTCCCTGTCAGCTGCTTTCTTGC  446

seq1  TCTGTCTCTTGACCTGATATTACTTTATTTAGGTATAGGATTAAAGGTGT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTCTCTTGACCTGATATTACTTTATTTAGGTATAGGATTAAAGGTGT  496

seq1  TTAAGGCTGAGGCAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAACTCCA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCTGAGGCAGGGGCTGGAGAGATGGCTCAGTGGTTAAGAACTCCA  546

seq1  AGTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGAAAACACATGGTGGC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCTTCCAAAGGTCCTGAGTTCAATTCCCAGAAAACACATGGTGGC  596

seq1  TCACAACCATCTATAATGGGATCTGATGCCCTCTTCTGGTGTGTTTGAAG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAACCATCTATAATGGGATCTGATGCCCTCTTCTGGTGTGTTTGAAG  646

seq1  ACTGCTACAGTGTACTCATATAAAGAAAATGCTTAAGTCTTAAAAAATAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACAGTGTACTCATATAAAGAAAATGCTTAAGTCTTAAAAAATAA  696

seq1  ATTCAGTAAAAAATATTTTAAAAGGCTGAGACACACCACAAGTACTTTCT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAAAAAATATTTTAAAAGGCTGAGACACACCACAAGTACTTTCT  746

seq1  TACAGTAAATAATAGACACTTGATTTAAAGATGTGTATTAGGGCTGAGCC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTAAATAATAGACACTTGATTTAAAGATGTGTATTAGGGCTGAGCC  796

seq1  AAACTGTAACAAGATTTTTACAGTTCACAATTTCAGGGGTTCACAATGTG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGTAACAAGATTTTTACAGTTCACAATTTCAGGGGTTCACAATGTG  846

seq1  ACATAACCCAACGTATGTCACTTTTTCCTACTTATTCCTTTTCTCTGAAT  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAACCCAACGTATGTCACTTTTTCCTACTTATTCCTTTTCTCTGAAT  896

seq1  CATCCCCCAGTATTTCCACAGTTGCTACCATTATAAAAATGAGAAAGTGA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCCAGTATTTCCACAGTTGCTACCATTATAAAAATGAGAAAGTGA  946

seq1  AATTTGTGTTTCATAGGTCAGACTAAGGCAGAGAACCATGTCAAATTCAG  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTGTTTCATAGGTCAGACTAAGGCAGAGAACCATGTCAAATTCAG  996

seq1  TGATTTATGACATATTCAAAGTCATATTCAAAGTCCCAAACTTTCTTTTT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATGACATATTCAAAGTCATATTCAAAGTCCCAAACTTTCTTTTT  1046

seq1  TGTTTTTAAGCTTTCATTAGGAATTGTTTTTAATGAATTC  1084
      ||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAGCTTTCATTAGGAATTGTTTTTAATGAATTC  1086