BAC Information

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BAC

Clone NameB6Ng01-123D15
Chromosome9 (Build37)
Map Location 70,673,376 - 70,798,772
singlet/doubletdoublet
Overlap geneLipc, LOC100041622
Upstream geneBnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik, Myo1e, Ccnb2, Rnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1
Downstream geneLOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2, Grinl1a, AA407270, LOC547043, LOC100040537, Cgnl1, Tcf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-123D15.bB6Ng01-123D15.g
ACCDH926450DH926451
length761737
definitionDH926450|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D15, 5' end.DH926451|Mus musculus domesticus DNA, BAC clone: B6Ng01-123D15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,673,376 - 70,674,134)(70,798,034 - 70,798,772)
sequence
gaattcaagtcctttgcaagaggactgtgtgctcttaagcatcaagcctt
ctctctccagtctctttggcctttttcctgggaccagacacgaatggcct
tatattcttttccatctgcctgaatagtttttcatagcaatagaaaaatt
tcacaaacatgattttaaaaggtgacataatttatctgttttatttatgt
ttagtttgttgccagattttttttttaatttagaacagttctctgatggc
catcttactacttaaatctttgccaaaatctatgcgatctctgatacata
ctcctaagagcagatcttgtaagatctcgggaaccagaccatttacatct
ctgtatcagttcctacacatccactttgctttgtgcatatttgtttcccc
aggactagggattgaacctgggcctcgtacatgttgacaagcactctgct
gctgaggcccatccacagcccatgttctcagcatttttttcgtgtgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgtacatgaagtcagaagaggccatt
ggattccatggagcttgagttacacacaggtggttgtgagtagcctgtta
gaggtgctgggaacctgcaagagcagcaaatgctcttgatcattaaggca
tctctttagcctctcgtgtcttctcaagagaccaagactcctgtgggtat
gaagcaagaagctactgtggtttttgagagaggcaatattggccaaggta
aacagtcagtt
gaattcttgccctgcctcccttcattgataaactgtgacgaagaattata
agctgaaataaaccctttttccctacaagctgctttggtgttttaccaga
gcagccctaagacaaggccagaagagggtgtcagatctcctggagctgaa
gttacaggtgactgaactgccaggcataggtgttgggaactgaacttagg
tgccctgcaaaagctctatgtgttgttaaccactgagctctctctccagt
gcccccaaccactaaatttcttgatttttatgtagaaaaatgactatctt
tggaaatgcaccttgaagtacttaggtatttagatatgaacttattctca
agtggtttgtgacatatgaacttattctcaaatggtttggaatgttttct
atatgtagaagcagagtggacagtaaagcagaggggtggaggaaggtaag
ctgtgctctcagcagaggctgtaggctcattcacctttcaccatttctaa
aatgggtgtcaactgccagcaattataacaaaactctatgtaatggggct
aagtgggaacttaaggggaaaatgaaccccaccgtgtattaagtgtgagg
ggcgcggtcagagcggtgtggaagtagagatccagatccacaagtgaaaa
aaatgaactaaaattctgacttaaatctcctgagaaaagtcaacattgaa
gtagaaaattataaataataaggacaggaatatctag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70673376_70674134
seq2: B6Ng01-123D15.b_49_809

seq1  GAATTCAAGTCCTTTGCAAGAGGACTGTGTGCTCTTAAGCATCAAGCCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGTCCTTTGCAAGAGGACTGTGTGCTCTTAAGCATCAAGCCTT  50

seq1  CTCTCTCCAGTCTCTTTGGCCTTTTTCCTGGGACCAGACACGAATGGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCCAGTCTCTTTGGCCTTTTTCCTGGGACCAGACACGAATGGCCT  100

seq1  TATATTCTTTTCCATCTGCCTGAATAGTTTTTCATAGCAATAGAAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCTTTTCCATCTGCCTGAATAGTTTTTCATAGCAATAGAAAAATT  150

seq1  TCACAAACATGATTTTAAAAGGTGACATAATTTATCTGTTTTATTTATGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAACATGATTTTAAAAGGTGACATAATTTATCTGTTTTATTTATGT  200

seq1  TTAGTTTGTTGCCAGATTTTTTTTTTAATTTAGAACAGTTCTCTGATGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTGTTGCCAGATTTTTTTTTTAATTTAGAACAGTTCTCTGATGGC  250

seq1  CATCTTACTACTTAAATCTTTGCCAAAATCTATGCGATCTCTGATACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTACTACTTAAATCTTTGCCAAAATCTATGCGATCTCTGATACATA  300

seq1  CTCCTAAGAGCAGATCTTGTAAGATCTCGGGAACCAGACCATTTACATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAAGAGCAGATCTTGTAAGATCTCGGGAACCAGACCATTTACATCT  350

seq1  CTGTATCAGTTCCTACACATCCACTTTGCTTTGTGCATATTTGTTTCCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATCAGTTCCTACACATCCACTTTGCTTTGTGCATATTTGTTTCCCC  400

seq1  AGGACTAGGGATTGAACCTGGGCCTCGTACATGTTGACAAGCACTCTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTAGGGATTGAACCTGGGCCTCGTACATGTTGACAAGCACTCTGCT  450

seq1  GCTGAGGCCCATCCACAGCCCATGTTCTCAGCATTTTTTTCGTGTGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGCCCATCCACAGCCCATGTTCTCAGCATTTTTTTCGTGTGTGTG  500

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTACATGAAGTCAGAAGAGGCCATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTACATGAAGTCAGAAGAGGCCATT  550

seq1  GGATTCCATGGAGCTTGAGTTACACACAGGTGGTTGTGAGTAGCCTGTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTCCATGGAGCTTGAGTTACACACAGGTGGTTGTGAGTAGCCTGTTA  600

seq1  GAGGTGCTGGGAACCTGCAAGAGCAGCAAATGCTCTTGATCATTAAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGCTGGGAACCTGCAAGAGCAGCAAATGCTCTTGATCATTAAGGCA  650

seq1  TCTCTTTAGCCTCTCGTGTCTTCTCAAGAGACCAAGACTCCTGT-GGTAT  699
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCTCTTTAGCCTCTCGTGTCTTCTCAAGAGACCAAGACTCCTGTGGGTAT  700

seq1  GAAGCAAGAAGCTACTGTGG-TTTTGAGAGAGGCAATATTGGCCAAGGTA  748
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GAAGCAAGAAGCTACTGTGGTTTTTGAGAGAGGCAATATTGGCCAAGGTA  750

seq1  AACAGTCAGTT  759
      |||||||||||
seq2  AACAGTCAGTT  761

seq1: chr9_70798034_70798772
seq2: B6Ng01-123D15.g_70_806 (reverse)

seq1  CTAGATTATTCCTGTCCTTATTATTTATTATTTTCTACTTCCATGTTGAC  50
      ||||| |||||||||||||||||||||| |||||||||||| ||||||||
seq2  CTAGA-TATTCCTGTCCTTATTATTTATAATTTTCTACTTCAATGTTGAC  49

seq1  TTTTCTCAGGAGATTTTAAGTCAGAATTTTAGTTCA-TTTTTTCACTTGT  99
      ||||||||||||| |||||||||||||||||||||| |||||||||||||
seq2  TTTTCTCAGGAGA-TTTAAGTCAGAATTTTAGTTCATTTTTTTCACTTGT  98

seq1  GGATCTGGATCTCTACTTCCCACACCGCTCTGACCGCGCCCCTCACACTT  149
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GGATCTGGATCTCTACTT-CCACACCGCTCTGACCGCGCCCCTCACACTT  147

seq1  AATACACGGTGGGGTTCATTTTCCCCTTAAGTTCCCACTTAGCCCCATTA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACACGGTGGGGTTCATTTTCCCCTTAAGTTCCCACTTAGCCCCATTA  197

seq1  CATAGAGTTTTGTTATAATTGCTGGCAGTTGACACCCATTTTAGAAATGG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGTTTTGTTATAATTGCTGGCAGTTGACACCCATTTTAGAAATGG  247

seq1  TGAAAGGTGAATGAGCCTACAGCCTCTGCTGAGAGCACAGCTTACCTTCC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGTGAATGAGCCTACAGCCTCTGCTGAGAGCACAGCTTACCTTCC  297

seq1  TCCACCCCTCTGCTTTACTGTCCACTCTGCTTCTACATATAGAAAACATT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCCCTCTGCTTTACTGTCCACTCTGCTTCTACATATAGAAAACATT  347

seq1  CCAAACCATTTGAGAATAAGTTCATATGTCACAAACCACTTGAGAATAAG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAACCATTTGAGAATAAGTTCATATGTCACAAACCACTTGAGAATAAG  397

seq1  TTCATATCTAAATACCTAAGTACTTCAAGGTGCATTTCCAAAGATAGTCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATATCTAAATACCTAAGTACTTCAAGGTGCATTTCCAAAGATAGTCA  447

seq1  TTTTTCTACATAAAAATCAAGAAATTTAGTGGTTGGGGGCACTGGAGAGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTACATAAAAATCAAGAAATTTAGTGGTTGGGGGCACTGGAGAGA  497

seq1  GAGCTCAGTGGTTAACAACACATAGAGCTTTTGCAGGGCACCTAAGTTCA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCAGTGGTTAACAACACATAGAGCTTTTGCAGGGCACCTAAGTTCA  547

seq1  GTTCCCAACACCTATGCCTGGCAGTTCAGTCACCTGTAACTTCAGCTCCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAACACCTATGCCTGGCAGTTCAGTCACCTGTAACTTCAGCTCCA  597

seq1  GGAGATCTGACACCCTCTTCTGGCCTTGTCTTAGGGCTGCTCTGGTAAAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCTGACACCCTCTTCTGGCCTTGTCTTAGGGCTGCTCTGGTAAAA  647

seq1  CACCAAAGCAGCTTGTAGGGAAAAAGGGTTTATTTCAGCTTATAATTCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAAAGCAGCTTGTAGGGAAAAAGGGTTTATTTCAGCTTATAATTCTT  697

seq1  CGTCACAGTTTATCAATGAAGGGAGGCAGGGCAAGAATTC  739
      ||||||||||||||||||||||||||||||||||||||||
seq2  CGTCACAGTTTATCAATGAAGGGAGGCAGGGCAAGAATTC  737