BAC Information

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BAC

Clone NameB6Ng01-124B08
Chromosome9 (Build37)5 (Build37)
Map Location 39,454,639 - 39,455,64358,660,008 - 58,660,042
singlet/doubletsingletsinglet
Overlap geneOlfr961
Upstream geneOlfr915, Olfr916, Olfr917, Olfr918, GA_x5J8B7W60AJ-925630-926226, Olfr919, Loh11cr2a, Olfr920, Olfr921, Olfr922, Olfr923, Olfr924, Olfr26, Olfr925-ps1, Olfr926, GA_x5J8B7W60AJ-719102-719883, Olfr928-ps1, GA_x5J8B7W60AJ-703922-704828, Olfr930, GA_x5J8B7W60AJ-666029-666595, Olfr1545-ps1, Olfr932-ps1, Olfr933, Olfr934, Olfr935, Olfr146, EG628171, Olfr937, LOC667260, Olfr938, Olfr939-ps1, GA_x5J8B7W60AJ-540286-540740, Olfr941-ps1, Olfr27, Olfr942-ps1, Olfr943, Olfr944, Olfr144, Olfr945, GA_x5J8B7W60AJ-354484-355428, Olfr947-ps1, Olfr948, LOC667312, Olfr949-ps1, Olfr950-ps1, Olfr951, Olfr952, Olfr953-ps1, Olfr954, Olfr955, Olfr956-ps1, Olfr44, Olfr957, Olfr958, Olfr959, AW551984, Olfr148, Olfr960
Downstream geneGA_x5J8B7W60AJ-4787-4010, Olfr963, Olfr964-ps1, Olfr149, Olfr965, Olfr966-ps1, Olfr150, Olfr967, Olfr968, Olfr969, Olfr970, Olfr971, Olfr972, Olfr973, LOC100043015, Olfr974, Olfr975, Olfr976, Olfr977-ps1, Olfr978, Olfr979, Olfr980, Olfr981, 1700001J11Rik, Olfr982, Olfr983, Olfr984, Olfr985, 1700030E15Rik, LOC235279, Olfr986, Zfp202, Scn3b, Gramd1b, LOC270148
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124B08.bB6Ng01-124B08.g
ACCDH927081DH927082
length1,0031,020
definitionDH927081|Mus musculus domesticus DNA, BAC clone: B6Ng01-124B08, 5' end.DH927082|Mus musculus domesticus DNA, BAC clone: B6Ng01-124B08, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(39,454,639 - 39,455,643)(58,660,008 - 58,660,042)
sequence
gaattcctgagattttggtagaaatctggaatgtactttctccatttaga
atggatataaaattctaagacagtgaatggaagagggtaagtgagtttgt
gagcccctttagagttagataacaaacacatattggggaatagtggtgat
gagagagaactcacacagcataaaaattaacacatctgtgcagacatttc
atcacacgttacatcataaaacagagaaatataaaataaacatgtatctt
caaatggtgaaggaagtggcaaattgatataatgtacatttcaatttaat
atgccctggaattatagataacatgtgtcctgtgaagtaagtcatagact
caaagtaaactgaatcagacactcttcagcaaacacttagctgttttcat
ttacttccaggctaagacacctcttaagaaatacatgcctcagggctgct
ttcacatccttgttcctcaggctgtagatcaatgggttgatggtgggtgt
cacaagattgtgcaaaatctgaataatcgcactaagcaatggactagggt
tgggctgtaggtagatgacgatgacaggtccatagacacacatgatggct
gtgaggtgggcactgcaggtggagaacgctctctgcctgccttctgttga
gcggatttttgagatggagatcccaattcgagtgtaggatacaataatga
gaaagaaacaaatgagagataaaagaccaacatttgtgaaacctaccctc
tgtgctagagaggaatcttcacaggctagcagtaacactgcacgcatgtc
acagaagtaataactcacctcactggggccacagtagggcaactggaaag
tgagggaagttaggatggtggcatgcacacagccactcatccaggtccct
gtggccaagacacagcatactctgtggttcatgatgattgtgtatctcaa
gggatgctatggcaacaaagcggttcataggccatcactgtgtacagaaa
cac
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
aaatgctggcgtggatgtggagaaagaggaagactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctcggc
atttatccagaagatgcctcaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagccccaaacc
taggattcccaagatataaggtacaatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagaattgggaa
caaaacacccatggaaggagtttacagagacaaagtttggagctgagatg
aaaggatggaccatgtagagactgcccttatccagggatccaccccataa
tcagcatccaacgctgacaccattgcataccctagcagattttattgaag
ggacccagatgtagctatctcttctgagactatgccggggcctagcaata
cagaagtggatgctccacgttcagctaatggatggatcacagggcttcca
atggaggatctagagaagaacccatggagctaagggatcttcaaccctat
aggtggaacaacattatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_39454639_39455643
seq2: B6Ng01-124B08.b_48_1050 (reverse)

seq1  GTGTTTCTTGTACACAGTGATGGCCTATG-ACCGCTTTGTTGCCATATGC  49
      ||||||| ||||||||||||||||||||| ||||||||||||||||| ||
seq2  GTGTTTC-TGTACACAGTGATGGCCTATGAACCGCTTTGTTGCCATA-GC  48

seq1  TTCCCTTTGAGATACACAATCATCATGAACCACAGAGTATGCTGTGTCTT  99
       |||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCC-TTGAGATACACAATCATCATGAACCACAGAGTATGCTGTGTCTT  97

seq1  GGCCACAGGGACCTGGATGAGTGGCTGTGTGCATGCCACCATCCTAACTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCACAGGGACCTGGATGAGTGGCTGTGTGCATGCCACCATCCTAACTT  147

seq1  CCCTCACTTTCCAGTTGCCCTACTGTGGCCCCAGTGAGGTGAGTTATTAC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCACTTTCCAGTTGCCCTACTGTGGCCCCAGTGAGGTGAGTTATTAC  197

seq1  TTCTGTGACATGCCTGCAGTGTTACTGCTAGCCTGTGAAGATTCCTCTCT  249
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTCTGTGACATGCGTGCAGTGTTACTGCTAGCCTGTGAAGATTCCTCTCT  247

seq1  AGCACAGAGGGTAGGTTTCACAAATGTTGGTCTTTTATCTCTCATTTGTT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGAGGGTAGGTTTCACAAATGTTGGTCTTTTATCTCTCATTTGTT  297

seq1  TCTTTCTCATTATTGTATCCTACACTCGAATTGGGATCTCCATCTCAAAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCATTATTGTATCCTACACTCGAATTGGGATCTCCATCTCAAAA  347

seq1  ATCCGCTCAACAGAAGGCAGGCAGAGAGCGTTCTCCACCTGCAGTGCCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGCTCAACAGAAGGCAGGCAGAGAGCGTTCTCCACCTGCAGTGCCCA  397

seq1  CCTCACAGCCATCATGTGTGTCTATGGACCTGTCATCGTCATCTACCTAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGCCATCATGTGTGTCTATGGACCTGTCATCGTCATCTACCTAC  447

seq1  AGCCCAACCCTAGTCCATTGCTTAGTGCGATTATTCAGATTTTGCACAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCAACCCTAGTCCATTGCTTAGTGCGATTATTCAGATTTTGCACAAT  497

seq1  CTTGTGACACCCACCATCAACCCATTGATCTACAGCCTGAGGAACAAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGACACCCACCATCAACCCATTGATCTACAGCCTGAGGAACAAGGA  547

seq1  TGTGAAAGCAGCCCTGAGGCATGTATTTCTTAAGAGGTGTCTTAGCCTGG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAAGCAGCCCTGAGGCATGTATTTCTTAAGAGGTGTCTTAGCCTGG  597

seq1  AAGTAAATGAAAACAGCTAAGTGTTTGCTGAAGAGTGTCTGATTCAGTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAAATGAAAACAGCTAAGTGTTTGCTGAAGAGTGTCTGATTCAGTTT  647

seq1  ACTTTGAGTCTATGACTTACTTCACAGGACACATGTTATCTATAATTCCA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAGTCTATGACTTACTTCACAGGACACATGTTATCTATAATTCCA  697

seq1  GGGCATATTAAATTGAAATGTACATTATATCAATTTGCCACTTCCTTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATATTAAATTGAAATGTACATTATATCAATTTGCCACTTCCTTCAC  747

seq1  CATTTGAAGATACATGTTTATTTTATATTTCTCTGTTTTATGATGTAACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGAAGATACATGTTTATTTTATATTTCTCTGTTTTATGATGTAACG  797

seq1  TGTGATGAAATGTCTGCACAGATGTGTTAATTTTTATGCTGTGTGAGTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGATGAAATGTCTGCACAGATGTGTTAATTTTTATGCTGTGTGAGTTC  847

seq1  TCTCTCATCACCACTATTCCCCAATATGTGTTTGTTATCTAACTCTAAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCATCACCACTATTCCCCAATATGTGTTTGTTATCTAACTCTAAAG  897

seq1  GGGCTCACAAACTCACTTACCCTCTTCCATTCACTGTCTTAGAATTTTAT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACAAACTCACTTACCCTCTTCCATTCACTGTCTTAGAATTTTAT  947

seq1  ATCCATTCTAAATGGAGAAAGTACATTCCAGATTTCTACCAAAATCTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATTCTAAATGGAGAAAGTACATTCCAGATTTCTACCAAAATCTCAG  997

seq1  GAATTC  1005
      ||||||
seq2  GAATTC  1003

seq1: chr5_58660008_58660042
seq2: B6Ng01-124B08.g_1053_1087 (reverse)

seq1  TTCATAATGTTGTTCCACCGATAGGGTTGCAGATC  35
      ||||||||||||||||||| ||||||||| |||||
seq2  TTCATAATGTTGTTCCACCTATAGGGTTGAAGATC  35