BAC Information

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BAC

Clone NameB6Ng01-124L19
Chromosome9 (Build37)
Map Location 108,026,030 - 108,119,658
singlet/doubletdoublet
Overlap geneBsn, LOC100042108, Dag1
Upstream geneDock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2, Tmem115, Cyb561d2, Tusc4, Zmynd10, Rassf1, Tusc2, Hyal2, Hyal1, Nat6, Hyal3, Ifrd2, BY080835, Sema3b, Gnai2, Slc38a3, Gnat1, Sema3f, Rbm5, Rbm6, Mon1a, Mst1r, 4921517D21Rik, Camkv, Traip, Ube1l, D330022A01Rik, 6230427J02Rik, 1700021K14Rik, Ihpk1, Gmppb, Rnf123, Amigo3, Mst1, Apeh
Downstream geneNicn1, EG434437, Tcta, Rhoa, Gpx1, Usp4, LOC623859, 1700102P08Rik, Ccdc36, BC048562, Klhdc8b, LOC100042228, Ccdc71, Lamb2, Usp19, Qars, Qrich1, Impdh2, 4733401H18Rik, Dalrd3, Wdr6, 4933406E20Rik, Arih2, ENSMUSG00000074075, Slc25a20, Prkar2a, Ihpk2, Nckipsd, Celsr3, Slc26a6, LOC100038959, Tmem89, Uqcrc1, Col7a1, Pfkfb4, Scotin, Trex1, 6620401K05Rik, Ccdc72, Ccdc51, EG665413, Plxnb1, E330009P21Rik, Fbxw13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124L19.bB6Ng01-124L19.g
ACCDH927568DH927569
length1,0871,049
definitionDH927568|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L19, 5' end.DH927569|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,118,551 - 108,119,658)(108,026,030 - 108,027,086)
sequence
gaattctatagatcaatatcagtttcgatctctctgtctctgttgttgtt
tgtttttgagacagggtctcaccatgtagctctggctgtcctggaagttg
ctttgtagaccaggctggccttgaactcgagagattcccttgcttctgcc
tcctgatggctgggattaaagacgtgcaccgccagcaccagcccatagaa
ctcttctactccagcaggcagatgctaatctattagttaaagactggtag
ctcgaaggatatgttgcttgcctgattttatatgaccctttgagtgtcct
gactctgcattggttgcctttgttccggtggttattggaatgttttacat
gggttaattttgaccagaagtatcttgaattgatacagtgacttagatat
ttgtagtatctggcagagacatataatgaatgggcttaccaggagcataa
agagcttttactgggaaaacaggatttatctgaacatatttatctgtgga
gaacaaacagtttagtagctgatgagcctttgggagagcagatgaagtac
tggggtgtagttcagcagcagagggcttgcccagcacactggactaagat
tccattctgtagccaccctgctcctcagaaccagggctgtgtggactgag
ggtttggaaaggtaatgcatgacctgattctgggagcttcgctttgcttt
tctcgcctgtgaaaataagcttaaagaggatttacttacttatcttgaga
cagagtcttcgctggcttctgaactatgatcttcctacctcttctgctgt
gtggtgggattacaggtgtgtgccgccgacctgaatgaaaagtcagtggt
aaagcagcaaccgaagggctggagagagagaaggctcagagttaaacact
tgttcagaggacctggttaaattctaagcacatacctggtggctacaaca
ctcataacttcaggttcaaaatacttctctgcctttgaggcacaagatgc
atgtggacaagacatatatgcagcaaacaatcttcatgaataaagtaaat
acatctaaaccaaattttaaaagttacatacccttgc
gaattcatatgggtcacctcgagtcaccacgtgactgggacacttttgtt
tgggctgattcagcgtttcgtgtggcctgccccagaggctgccacaggaa
gctgtcaggaacatttatgcccctggataaacaatgtctttccctctatg
tatatcctgcttaatggggaaatggcctgagatgtctcttgggggtacgg
ggcttccaaactaggttaactcaagtccaccagggctcatggtccttcgg
tgtcagcgcaccccatctgaccagcagtgagcttacatctacaggtgtcg
ggaaaacaggctctgtagacccctttcccccccactactggctgggccaa
atgtcctccaatgagctactgactctacagcttggacagggagtagtgtt
gggcttaaaaggccacatgggtttcacataaagaggccattcatctcact
cagggctactcctcctgtggtggtcaagtgatttccttagtcatactagg
cttggttcttttttttttttttttttttttttttgttattaagtattttc
ctcgtttacatttccaatgctatcccaaaagtcccccatacccacccctc
caatcccctacccacccactccccctttttggccctggcgttcccctagg
tttggttcttaaggaaacctttgcccaggaagtcagaaaaagtggcataa
acacagtggtgactccatgttctttctcccttttgtcccacttgggctaa
tggtgggcttggggtcccctgtcccacagctttgcttgactcaactgaac
acacacatggcttagtggctgccgcatgaagggcccttggcccaataatc
tgacaccacatacatcttcgggctatgtatgagccctcaaatcatgctta
acatgcaaaggtagcatggtaaagtcacatgactggtcctggccagaaaa
gaaataacgtaattgagctgacatatacacatcccaaggccaagtagtcc
agcctctgcctgggtaacctctattctttagggcctttcggggactcct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_108118551_108119658
seq2: B6Ng01-124L19.b_47_1133 (reverse)

seq1  GCAAGTGTATGTAACTTTTTTAAAATTTTGGTTTTAGATGTATTTACTTT  50
      ||||| |||||||||  |||||||||||  | ||||||||||||||||||
seq2  GCAAGGGTATGTAAC--TTTTAAAATTT--GGTTTAGATGTATTTACTTT  46

seq1  ATTTCATGTGTATGATTGTTTTGCTGGCATATATGTCTGTGTCCCACATG  100
      | ||||||   | ||||| |||||| |||||||||||| ||| |||||||
seq2  A-TTCATG---AAGATTG-TTTGCT-GCATATATGTCT-TGT-CCACATG  88

seq1  CATCCTTTGTGCCCTCAAAGGGCAGAGGAAGTATTTGAAACCTGAAGTTA  150
      ||||  ||||| ||||||| |||||| |||||||||  ||||||||||||
seq2  CATC--TTGTG-CCTCAAA-GGCAGA-GAAGTATTTTGAACCTGAAGTTA  133

seq1  TGAGTGGTTGTGAGCCACCAGGTATGTGCTAAGAATTTAACCCAGGTCCT  200
      ||||| ||||| |||||||||||||||||| ||||||||| |||||||||
seq2  TGAGT-GTTGT-AGCCACCAGGTATGTGCTTAGAATTTAA-CCAGGTCCT  180

seq1  CTGAACAAGTGTTTAACTCCTGAGCCTTCTCTCTCTCCAGCCCTTCGGTT  250
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CTGAACAAGTGTTTAACT-CTGAGCCTTCTCTCTCTCCAGCCCTTCGGTT  229

seq1  GCTGCTTTACCACTGACTTTTCATTCAGGTCGGCGGCACACACCTGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTTTACCACTGACTTTTCATTCAGGTCGGCGGCACACACCTGTAAT  279

seq1  CCCACCACACAGCAGAAGAGGTAGGAAGATCATAGTTCAGAAGCCAGCGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACCACACAGCAGAAGAGGTAGGAAGATCATAGTTCAGAAGCCAGCGA  329

seq1  AGACTCTGTCTCAAGATAAGTAAGTAAATCCTCTTTAAGCTTATTTTCAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTGTCTCAAGATAAGTAAGTAAATCCTCTTTAAGCTTATTTTCAC  379

seq1  AGGCGAGAAAAGCAAAGCGAAGCTCCCAGAATCAGGTCATGCATTACCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCGAGAAAAGCAAAGCGAAGCTCCCAGAATCAGGTCATGCATTACCTT  429

seq1  TCCAAACCCTCAGTCCACACAGCCCTGGTTCTGAGGAGCAGGGTGGCTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCCTCAGTCCACACAGCCCTGGTTCTGAGGAGCAGGGTGGCTAC  479

seq1  AGAATGGAATCTTAGTCCAGTGTGCTGGGCAAGCCCTCTGCTGCTGAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGGAATCTTAGTCCAGTGTGCTGGGCAAGCCCTCTGCTGCTGAACT  529

seq1  ACACCCCAGTACTTCATCTGCTCTCCCAAAGGCTCATCAGCTACTAAACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCCAGTACTTCATCTGCTCTCCCAAAGGCTCATCAGCTACTAAACT  579

seq1  GTTTGTTCTCCACAGATAAATATGTTCAGATAAATCCTGTTTTCCCAGTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTCCACAGATAAATATGTTCAGATAAATCCTGTTTTCCCAGTA  629

seq1  AAAGCTCTTTATGCTCCTGGTAAGCCCATTCATTATATGTCTCTGCCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTCTTTATGCTCCTGGTAAGCCCATTCATTATATGTCTCTGCCAGA  679

seq1  TACTACAAATATCTAAGTCACTGTATCAATTCAAGATACTTCTGGTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACAAATATCTAAGTCACTGTATCAATTCAAGATACTTCTGGTCAAA  729

seq1  ATTAACCCATGTAAAACATTCCAATAACCACCGGAACAAAGGCAACCAAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACCCATGTAAAACATTCCAATAACCACCGGAACAAAGGCAACCAAT  779

seq1  GCAGAGTCAGGACACTCAAAGGGTCATATAAAATCAGGCAAGCAACATAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTCAGGACACTCAAAGGGTCATATAAAATCAGGCAAGCAACATAT  829

seq1  CCTTCGAGCTACCAGTCTTTAACTAATAGATTAGCATCTGCCTGCTGGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCGAGCTACCAGTCTTTAACTAATAGATTAGCATCTGCCTGCTGGAG  879

seq1  TAGAAGAGTTCTATGGGCTGGTGCTGGCGGTGCACGTCTTTAATCCCAGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGAGTTCTATGGGCTGGTGCTGGCGGTGCACGTCTTTAATCCCAGC  929

seq1  CATCAGGAGGCAGAAGCAAGGGAATCTCTCGAGTTCAAGGCCAGCCTGGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCAGGAGGCAGAAGCAAGGGAATCTCTCGAGTTCAAGGCCAGCCTGGT  979

seq1  CTACAAAGCAACTTCCAGGACAGCCAGAGCTACATGGTGAGACCCTGTCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAAGCAACTTCCAGGACAGCCAGAGCTACATGGTGAGACCCTGTCT  1029

seq1  CAAAAACAAACAACAACAGAGACAGAGAGATCGAAACTGATATTGATCTA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAACAAACAACAACAGAGACAGAGAGATCGAAACTGATATTGATCTA  1079

seq1  TAGAATTC  1108
      ||||||||
seq2  TAGAATTC  1087

seq1: chr9_108026030_108027086
seq2: B6Ng01-124L19.g_68_1116

seq1  GAATTCATATGGGTCACCTCGAGTCACCACGTGACTGGGACACTTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATATGGGTCACCTCGAGTCACCACGTGACTGGGACACTTTTGTT  50

seq1  TGGGCTGATTCAGCGTTTCGTGTGGCCTGCCCCAGAGGCTGCCACAGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCTGATTCAGCGTTTCGTGTGGCCTGCCCCAGAGGCTGCCACAGGAA  100

seq1  GCTGTCAGGAACATTTATGCCCCTGGATAAACAATGTCTTTCCCTCTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCAGGAACATTTATGCCCCTGGATAAACAATGTCTTTCCCTCTATG  150

seq1  TATATCCTGCTTAATGGGGAAATGGCCTGAGATGTCTCTTGGGGGTACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATCCTGCTTAATGGGGAAATGGCCTGAGATGTCTCTTGGGGGTACGG  200

seq1  GGCTTCCAAACTAGGTTAACTCAAGTCCACCAGGGCTCATGGTCCTTCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAAACTAGGTTAACTCAAGTCCACCAGGGCTCATGGTCCTTCGG  250

seq1  TGTCAGCGCACCCCATCTGACCAGCAGTGAGCTTACATCTACAGGTGTCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAGCGCACCCCATCTGACCAGCAGTGAGCTTACATCTACAGGTGTCG  300

seq1  GGAAAACAGGCTCTGTAGACCCCTTTCCCCCCCACTACTGGCTGGGCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACAGGCTCTGTAGACCCCTTTCCCCCCCACTACTGGCTGGGCCAA  350

seq1  ATGTCCTCCAATGAGCTACTGACTCTACAGCTTGGACAGGGAGTAGTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCTCCAATGAGCTACTGACTCTACAGCTTGGACAGGGAGTAGTGTT  400

seq1  GGGCTTAAAAGGCCACATGGGTTTCACATAAAGAGGCCATTCATCTCACT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTTAAAAGGCCACATGGGTTTCACATAAAGAGGCCATTCATCTCACT  450

seq1  CAGGGCTACTCCTCCTGTGGTGGTCAAGTGATTTCCTTAGTCATACTAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGCTACTCCTCCTGTGGTGGTCAAGTGATTTCCTTAGTCATACTAGG  500

seq1  CTTGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTATTAGGTATTTTC  550
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTTGGTTCTTTTTTTTTTTTTTTTTTTTTTTTTTGTTATTAAGTATTTTC  550

seq1  CTCGTTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCACCCCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGTTTACATTTCCAATGCTATCCCAAAAGTCCCCCATACCCACCCCTC  600

seq1  CAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTAGG  650

seq1  TTTGGTTCTTAAGGAGACCTTTGCCAAGGAAGTCAGAAGAAGGTGGCATA  700
      ||||||||||||||| ||||||||| |||||||||||| || ||||||||
seq2  TTTGGTTCTTAAGGAAACCTTTGCCCAGGAAGTCAGAA-AAAGTGGCATA  699

seq1  GACACAGTGGTGACTCCATGTTCTTTCTCCCTTTTGTCCCACCTTGGGCT  750
       |||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AACACAGTGGTGACTCCATGTTCTTTCTCCCTTTTGTCCCA-CTTGGGCT  748

seq1  AGTGGT-GGCTT-GTGTCCCCTGTCCCATCAGCTATGCTTGACTCAACTG  798
      | |||| ||||| | ||||||||||||| ||||| |||||||||||||||
seq2  AATGGTGGGCTTGGGGTCCCCTGTCCCA-CAGCTTTGCTTGACTCAACTG  797

seq1  AACATCACACATGGCTTAGTGGCTGCCGCATGAAGGGTCCTTGGCCCAAT  848
      |||| |||||||||||||||||||||||||||||||| ||||||||||||
seq2  AACA-CACACATGGCTTAGTGGCTGCCGCATGAAGGGCCCTTGGCCCAAT  846

seq1  AATCTGACACCACATACATCCTCTGGCTATG-ATGAGCCCATCAGATCAT  897
      |||||||||||||||||||| || ||||||| |||||||| ||| |||||
seq2  AATCTGACACCACATACATCTTCGGGCTATGTATGAGCCC-TCAAATCAT  895

seq1  GCTTAGACATGCCAAAGGTAGCCATGGTAAAGTCACATGACTGGTCCTGG  947
      ||||| ||||| ||||||||| |||||||||||||||||||||||||| |
seq2  GCTTA-ACATG-CAAAGGTAG-CATGGTAAAGTCACATGACTGGTCCT-G  941

seq1  GCCAGAGAAGGAAGTAACGGGATTGGAGCATGAGCAGACACA-GTCACAA  996
      |||||| || ||| |||||  ||| |||| ||| || | |||  || |||
seq2  GCCAGA-AAAGAAATAACGTAATT-GAGC-TGA-CATATACACATCCCAA  987

seq1  GGCCCAGGGTAGTCCAG-CTCTGCCTGGGT-ACCTCTA-TCTTTCAGGCC  1043
      |||| |  ||||||||| |||||||||||| ||||||| |||||  ||||
seq2  GGCCAA--GTAGTCCAGCCTCTGCCTGGGTAACCTCTATTCTTTAGGGCC  1035

seq1  TTTCGGGGACTCCT  1057
      ||||||||||||||
seq2  TTTCGGGGACTCCT  1049