BAC Information

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BAC

Clone NameB6Ng01-124L23
Chromosome9 (Build37)
Map Location 70,110,286 - 70,262,342
singlet/doubletdoublet
Overlap geneMyo1e, Ccnb2
Upstream geneRora, Narg2, EG665815, EG244913, Anxa2, Foxb1, Bnip2, LOC624164, Gtf2a2, Gcnt3, 6430514L14Rik
Downstream geneRnf111, Sltm, B230380D07Rik, Adam10, Cycs-ps1, Lipc, LOC100041622, LOC100041628, Aqp9, 1700020I22Rik, LOC100041660, Aldh1a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124L23.bB6Ng01-124L23.g
ACCDH927576DH927577
length1,048543
definitionDH927576|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L23, 5' end.DH927577|Mus musculus domesticus DNA, BAC clone: B6Ng01-124L23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,261,303 - 70,262,342)(70,110,286 - 70,110,837)
sequence
gaattcttcctttctgtttgcagttggccattgctgaagttaagtgctga
gtcagtaggggagtaaggtctgcgctgggttggtgctgggagggcaggaa
tctagaaaagcaagacgctttagctcttggagccaaagttccttagtttc
aggaattgtcagtgctcaactaaagtggagaagctttcctgtgtggtgtg
gccttgactagcagcatggttgcccttcgttgttgccctgccgtgccaca
gcacacctcttgacagctcccaccctgcccatccctctgtactctcagcc
tccagatcacaggagcaaggtgacgcagcacctgtcatcatcttgttaca
cggttaccactacagtttggagtcaggctcccactgtgtagcataagctg
gcctggaacttactgtgtgcccaggctgacctaagtaagcattgctcctc
atggcacctcacccaggttcacttagttaacctctgcagtagacactaca
cagagagagcgcacagtgggcccacggtacttagggcaatgtgcaaacag
taacagaattcacttaagttgtggttttgttttacttttttgttatctct
gagtcatgttctcactctagcccaggttaacctaggactctccaccttta
ggctggactccagctcctagctctccttccacctcagcctcctccgtgct
gctactgcaggcgagttagcacacccagcttttaaacctatggatggcat
tagctgtgagccaggttttgtgttttattcccttaatatgtactctgtat
gatctagaaatcctgttaggattttgaaattcttttcaaataatggttta
ttttatacttcactacgaaatatttatttgagctgtacaacttttttgat
ttgttcgagttttataaattaacccaccctgtcagctaagtcttttgcat
tcctcctgctttgttctcagacttggacttgtgctcttgtgcttcctgct
ggccagggctttatttcagaaggaagtgtggaatactacagcatgatg
ttttaaaaatgtcaacaatcataaaagacaaaggaaagctgttacaaatg
aaaggagatgaaagaggtctgacaatgaaatgtaacgcattactaatccg
gaactaggggcagaaagaccgctgggagagacaccattagtaccattagt
gtctctggagaggcacaaaagaaattgcatctgtgtttcttcctgacctt
ctgttataagaaagcaccctatttaggagggtatatattgtaggtaagga
tcaggggtcataatgtgtccgtcctctttttatatttttgagctgggagc
ttagcctttaaaggttaagtcatctctttgagccccagtccccttcctaa
atgcttctggaggaatcctggcagagagtgggaagaagaaagcagggttg
caaatggatggagtgtaaggagtttttaatgtatttttttgtaacttttt
gtagctaaaaattgtatcaaaacaaaacccctatatcttctttatcctgc
ctttaaaaaccaacaaggagggaaaaggagggaggggagggag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_70261303_70262342
seq2: B6Ng01-124L23.b_47_1094 (reverse)

seq1  CATCATGCTGTATGTATTCCACTACTTCCTTCTGAATTAAGGCCCTGGCA  50
      |||||||||||| ||||||||| ||||||||||||| ||| |||||||| 
seq2  CATCATGCTGTA-GTATTCCAC-ACTTCCTTCTGAAATAAAGCCCTGGCC  48

seq1  AGCAGGAAGCACAAGAGCAC-AGTCC-AGTCTGAGAACAAAGCAGGAGG-  97
      |||||||||||||||||||| ||||| |||||||||||||||||||||| 
seq2  AGCAGGAAGCACAAGAGCACAAGTCCAAGTCTGAGAACAAAGCAGGAGGA  98

seq1  ATGC-AAAGACTTAGCTGACAGGGTGG--TTATTTATAAAACTCGAACAA  144
      |||| ||||||||||||||||||||||  | |||||||||||||||||||
seq2  ATGCAAAAGACTTAGCTGACAGGGTGGGTTAATTTATAAAACTCGAACAA  148

seq1  ATC-AAAAAGTTGTACAGCTCAAATAAATATTTCGTAGTGAAGTAT-AAA  192
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  ATCAAAAAAGTTGTACAGCTCAAATAAATATTTCGTAGTGAAGTATAAAA  198

seq1  TAAACCATTATTTGAAAAGAATTTCAAAATCCTAACAGGATTTCTAGATC  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCATTATTTGAAAAGAATTTCAAAATCCTAACAGGATTTCTAGATC  248

seq1  ATACAGAGTACATATTAAGGGAATAAAACAC-AAACCTGGCTCACAGCTA  291
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  ATACAGAGTACATATTAAGGGAATAAAACACAAAACCTGGCTCACAGCTA  298

seq1  ATGCCATCCATAGGTTTAAAAGCTGGGTGTGCTAACTCGCCTGCAGTAGC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATCCATAGGTTTAAAAGCTGGGTGTGCTAACTCGCCTGCAGTAGC  348

seq1  AGCACGGAGGAGGCTGAGGTGGAAGGAGAGCTAGGAGCTGGAGTCCAGCC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACGGAGGAGGCTGAGGTGGAAGGAGAGCTAGGAGCTGGAGTCCAGCC  398

seq1  T-AAGGTGGAGAGTCCTAGGTTAACCTGGGCTAGAGTGAGAACATGACTC  440
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGGTGGAGAGTCCTAGGTTAACCTGGGCTAGAGTGAGAACATGACTC  448

seq1  AGAGATAACAAAAAAGTAAAACAAAACCACAACTTAAGTGAATTCTGTTA  490
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATAACAAAAAAGTAAAACAAAACCACAACTTAAGTGAATTCTGTTA  498

seq1  CTGTTTGCACATTGCCCTAAGTACCGTGGGCCCACTGTGCGCTCTCTCTG  540
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCACATTGCCCTAAGTACCGTGGGCCCACTGTGCGCTCTCTCTG  548

seq1  TGTAGTGTCTACTGCAGAGGTTAACTAAGTGAACCTGGGTGAGGTGCCAT  590
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTGTCTACTGCAGAGGTTAACTAAGTGAACCTGGGTGAGGTGCCAT  598

seq1  GAGGAGCAATGCTTACTTAGGTCAGCCTGGGCACACAGTAAGTTCCAGGC  640
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAGCAATGCTTACTTAGGTCAGCCTGGGCACACAGTAAGTTCCAGGC  648

seq1  CAGCTTATGCTACACAGTGGGAGCCTGACTCCAAACTGTAGTGGTAACCG  690
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTATGCTACACAGTGGGAGCCTGACTCCAAACTGTAGTGGTAACCG  698

seq1  TGTAACAAGATGATGACAGGTGCTGCGTCACCTTGCTCCTGTGATCTGGA  740
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAACAAGATGATGACAGGTGCTGCGTCACCTTGCTCCTGTGATCTGGA  748

seq1  GGCTGAGAGTACAGAGGGATGGGCAGGGTGGGAGCTGTCAAGAGGTGTGC  790
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGAGAGTACAGAGGGATGGGCAGGGTGGGAGCTGTCAAGAGGTGTGC  798

seq1  TGTGGCACGGCAGGGCAACAACGAAGGGCAACCATGCTGCTAGTCAAGGC  840
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGCACGGCAGGGCAACAACGAAGGGCAACCATGCTGCTAGTCAAGGC  848

seq1  CACACCACACAGGAAAGCTTCTCCACTTTAGTTGAGCACTGACAATTCCT  890
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCACACAGGAAAGCTTCTCCACTTTAGTTGAGCACTGACAATTCCT  898

seq1  GAAACTAAGGAACTTTGGCTCCAAGAGCTAAAGCGTCTTGCTTTTCTAGA  940
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTAAGGAACTTTGGCTCCAAGAGCTAAAGCGTCTTGCTTTTCTAGA  948

seq1  TTCCTGCCCTCCCAGCACCAACCCAGCGCAGACCTTACTCCCCTACTGAC  990
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGCCCTCCCAGCACCAACCCAGCGCAGACCTTACTCCCCTACTGAC  998

seq1  TCAGCACTTAACTTCAGCAATGGCCAACTGCAAACAGAAAGGAAGAATTC  1040
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTTAACTTCAGCAATGGCCAACTGCAAACAGAAAGGAAGAATTC  1048

seq1: chr9_70110286_70110837
seq2: B6Ng01-124L23.g_68_616

seq1  GAATTCTTTTAAAAATGTCAACAATCATAAAAGACAAAGGAAAGCTGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTAAAAATGTCAACAATCATAAAAGACAAAGGAAAGCTGTTA  50

seq1  CAAATGAAAGGAGATGAAAGAGGTCTGACAATGAAATGTAACGCATTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGAAAGGAGATGAAAGAGGTCTGACAATGAAATGTAACGCATTACT  100

seq1  AATCCGGAACTAGGGGCAGAAAGACCGCTGGGAGAGACACCATTAGTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGGAACTAGGGGCAGAAAGACCGCTGGGAGAGACACCATTAGTACC  150

seq1  ATTAGTGTCTCTGGAGAGGCACAAAAGAAATTGCATCTGTGTTTCTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTGTCTCTGGAGAGGCACAAAAGAAATTGCATCTGTGTTTCTTCCT  200

seq1  GACCTTCTGTTATAAGAAAGCACCCTATTTAGGAGGGTATATATTGTAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCTGTTATAAGAAAGCACCCTATTTAGGAGGGTATATATTGTAGG  250

seq1  TAAGGATCAGGGGTCATAATGTGTCCGTCCTCTTTTTATATTTTTGAGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGATCAGGGGTCATAATGTGTCCGTCCTCTTTTTATATTTTTGAGCT  300

seq1  GGGAGCTTAGCCTTTAAAGGTTAAGTCATCTCTTTGAGCCCCAGTCCCCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGCTTAGCCTTTAAAGGTTAAGTCATCTCTTTGAGCCCCAGTCCCCT  350

seq1  TCCTAAATGCTTCTGGAGGAATCCTGGCAGAGAGTGGGAAGAAGAAAGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAATGCTTCTGGAGGAATCCTGGCAGAGAGTGGGAAGAAGAAAGCA  400

seq1  GGGTTGCAAATGGATGGAGTGTAAGGAGTTTTTAATGTATTTTTTTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTGCAAATGGATGGAGTGTAAGGAGTTTTTAATGTATTTTTTTGTAA  450

seq1  CTTTTTGTAGCTAAAAATTGTATCAAAACAAAACCCCTATATCTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTGTAGCTAAAAATTGTATCAAAACAAAACCCCTATATCTTCTTTA  500

seq1  TCCTGCCTTTAAAAACCAACAAGGAGGGAAAAGGAGGGAGGGAGGGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||   |||||||
seq2  TCCTGCCTTTAAAAACCAACAAGGAGGGAAAAGGAGGGAG---GGGAGGG  547

seq1  AG  552
      ||
seq2  AG  549