BAC Information

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BAC

Clone NameB6Ng01-124M10
Chromosome9 (Build37)
Map Location 16,227,991 - 16,358,020
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039955, BC017612, Ccdc67, LOC665461, LOC330891, Slc36a4, Mtnr1b, Fat3
Downstream geneEG434373, LOC100040074, LOC100040090
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-124M10.bB6Ng01-124M10.g
ACCDH927597DH927598
length1,2621,200
definitionDH927597|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M10, 5' end.DH927598|Mus musculus domesticus DNA, BAC clone: B6Ng01-124M10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(16,227,991 - 16,229,278)(16,356,772 - 16,358,020)
sequence
gaattccagtgtctgtcacataaaaccagaaagacatttaaatattcata
tccaatgctattttaatcttcatagagaacagtctacatgttttgctagg
cagtttttaccactttaaccttcaatgaaaaggcaaacatcaactccttg
tgctagaggtcatggtacacatgtgcacatgtgtgtgtggggagaatgta
taggcacatgtgtgtatatatccaaacctagagcagaagtagttgctgac
tctggcctttctgtgagattcttcagtgttcttcagagtaagactacata
ttaaagatccccagcttctccaatccccatggaaacaggtgagaggtgca
aattctattgcttggagcttatttaacccagtgaacagagaggcagcaag
ccagacctaacctgagacacacagaaatgatagagttagatactgggtac
atccatcattaagaatttgcttcttcgaagtgactgtaaaataaatttga
agttcactcagcataaaggaacattgttatttaactgccttgtttgcatc
ttcaagctgagactaaaagatggaagtgaacccagtctacacaaatgctg
ggcccattgtcaacaaggttggctctgtgcctctcctagaacccttgtcc
cagaccaggatgacaagaaaacagacaaataagtataaggatggcttgct
ggtggagatctgctgctattcctaccatctacctactgtctttccctcta
tgagcagaacatcccttccaggggaaggaaaaccagatgatcccccaact
cccgctgggctctctgccctcaggatactcggaacctctagcagctcaaa
ctttaagccttcctgaccatgttactcagcaccatagaactattctgttt
gcttttgttttgtttttgtcaacttgacacaagtagagttgtctgagaag
atggaccttggctggagtaatacttcctttcatcagactgcttgtagaca
agttctgagggtacgtttttctgaatgtaatgaatgatatgaaggaccca
gtcaggtgtgcataagaaagcaaatgaccaaacaccaaggcaatagcagc
actcccctgggggcttgctttggtacttaattcaggtctggcttagattc
ctttctggtcttccaggatagacttaacgtcaaactaataaccttcttca
tgtgtcggatcgtagtctccacgaaagacaatggctgagagcgagggctc
ttttctctcatg
gaattctctgttgtccaagtcatccagatctttttgttgacttaaagaac
actagcccatccatagctctctgttaacatttacatctgcttcacattgg
gcacattcacacccactgtcttgttctgctcatttttcgtgcatttctga
gttttcttcagctaagttatcaggtctttcagaacagacactgtgctgta
tataattctcaatgtgcctctctgagggtttaagatagtgtgttgaataa
aacatgtatagttcagttgggtaattgactatccccagagattcaaagtc
acctctttggcctcagcataatgtgtttcctaacatcctgacatcaagct
agttctggaattttccaaatcatttgaattctttgccaaaccaatctaag
ctgtgatggacaggatacatccctgtctgtaacatttccctggtgctgtg
gcttattaaagattgcaggcctgtgagcagctgcttaacaagaaaaacaa
aattcctccagggtaacttgatttctgatcttccttaaaaaccatcttat
gcacaagtgttcaaatgagagcactttaatcacagaatgcaaacctcaga
ctcccagcactcctttggcattggtggggccaacaccatattggaaacaa
gtgtctgccttcccctgtgtttcagcaggtgaagggcagacttcagtgtc
atgagctctcactgaggatctacaggctctgttcccttggctctgcattc
taatatctcctttatgggaaggttgctttttgtgaaaagattttcttgaa
tcgatagaatttactctgaatcatactttctcacacatggaaaatattta
tacacataatgtgcactatgtaagtaaatatcgcaaaatatttaaagttt
cctctttgaatgaatttcatttttatttttaaatttcatcttttttatta
gtattctcatttacattccaatgctacccaagtccccaaacctcccccac
tcccactcttgggtagcatcctgtactgagatattaagattgtgaaacat
gggccctcttcacatgatggcgacactaggctctctgtatcaatgttagc
tagaagacacagctcggtacttgtgagtcatattgtgttcactaagttcg
acccatgagtcttgtaaacttctagctcctccatgtggggccctctgatc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr9_16227991_16229278
seq2: B6Ng01-124M10.b_45_1306

seq1  GAATTCCAGTGTCTGTCACATAAAACCAGAAAGACATTTAAATATTCATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTCTGTCACATAAAACCAGAAAGACATTTAAATATTCATA  50

seq1  TCCAATGCTATTTTAATCTTCATAGAGAACAGTCTACATGTTTTGCTAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAATGCTATTTTAATCTTCATAGAGAACAGTCTACATGTTTTGCTAGG  100

seq1  CAGTTTTTACCACTTTAACCTTCAATGAAAAGGCAAACATCAACTCCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTTACCACTTTAACCTTCAATGAAAAGGCAAACATCAACTCCTTG  150

seq1  TGCTAGAGGTCATGGTACACATGTGCACATGTGTGTGTGGGGAGAATGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAGGTCATGGTACACATGTGCACATGTGTGTGTGGGGAGAATGTA  200

seq1  TAGGCACATGTGTGTATATATCCAAACCTAGAGCAGAAGTAGTTGCTGAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCACATGTGTGTATATATCCAAACCTAGAGCAGAAGTAGTTGCTGAC  250

seq1  TCTGGCCTTTCTGTGAGATTCTTCAGTGTTCTTCAGAGTAAGACTACATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCCTTTCTGTGAGATTCTTCAGTGTTCTTCAGAGTAAGACTACATA  300

seq1  TTAAAGATCCCCAGCTTCTCCAATCCCCATGGAAACAGGTGAGAGGTGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGATCCCCAGCTTCTCCAATCCCCATGGAAACAGGTGAGAGGTGCA  350

seq1  AATTCTATTGCTTGGAGCTTATTTAACCCAGTGAACAGAGAGGCAGCAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTATTGCTTGGAGCTTATTTAACCCAGTGAACAGAGAGGCAGCAAG  400

seq1  CCAGACCTAACCTGAGACACACAGAAATGATAGAGTTAGATACTGGGTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGACCTAACCTGAGACACACAGAAATGATAGAGTTAGATACTGGGTAC  450

seq1  ATCCATCATTAAGAATTTGCTTCTTCGAAGTGACTGTAAAATAAATTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATCATTAAGAATTTGCTTCTTCGAAGTGACTGTAAAATAAATTTGA  500

seq1  AGTTCACTCAGCATAAAGGAACATTGTTATTTAACTGCCTTGTTTGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCACTCAGCATAAAGGAACATTGTTATTTAACTGCCTTGTTTGCATC  550

seq1  TTCAAGCTGAGACTAAAAGATGGAAGTGAACCCAGTCTACACAAATGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGCTGAGACTAAAAGATGGAAGTGAACCCAGTCTACACAAATGCTG  600

seq1  GGCCCATTGTCAACAAGGTTGGCTCTGTGCCTCTCCTAGAACCCTTGTCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATTGTCAACAAGGTTGGCTCTGTGCCTCTCCTAGAACCCTTGTCC  650

seq1  CAGACCAGGATGACAAGAAAACAGACAAATAAGTATAAGGATGGCTTGCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAGGATGACAAGAAAACAGACAAATAAGTATAAGGATGGCTTGCT  700

seq1  GGTGGAGATCTGCTGCTATTCCTACCATCTACCTACTGTCTTTCCCTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGAGATCTGCTGCTATTCCTACCATCTACCTACTGTCTTTCCCTCTA  750

seq1  TGAGCAGAACATCCCTTCCAGGGGAAGGAAAACCAGATGATCCCCCAACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGAACATCCCTTCCAGGGGAAGGAAAACCAGATGATCCCCCAACT  800

seq1  CCCGCTGGGCTCTCTGCCTTCAGGATACTCGGAACCTCTAGCAGCTCAAA  850
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CCCGCTGGGCTCTCTGCCCTCAGGATACTCGGAACCTCTAGCAGCTCAAA  850

seq1  CTTTAAGCCTTCCTGACCATGTTACTCAGCACCATAGAACTATTCTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAAGCCTTCCTGACCATGTTACTCAGCACCATAGAACTATTCTGTTT  900

seq1  GCTTTTGTTTTGTTTTTTGTCAACTTGACACAAGTTAGAGTTGTCTGAGA  950
      |||||||||||| ||||||||||||||||||||| |||||||||||||||
seq2  GCTTTTGTTTTG-TTTTTGTCAACTTGACACAAG-TAGAGTTGTCTGAGA  948

seq1  AGATGGACCTTGGCT-GAGTAAATACTT-CTTTCATCCAGACTGCTTGTA  998
      ||||||||||||||| |||| ||||||| ||||||| |||||||||||||
seq2  AGATGGACCTTGGCTGGAGT-AATACTTCCTTTCAT-CAGACTGCTTGTA  996

seq1  GACAAGTTCTGAGGGTACG-TTTTCTGAATGTAATGAATGATATGAAGGA  1047
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GACAAGTTCTGAGGGTACGTTTTTCTGAATGTAATGAATGATATGAAGGA  1046

seq1  CCCAGCCA-GTGTGCATAAGAAAGCAAATGAGCAAACCAGCAAGCCAATA  1096
      ||||| || |||||||||||||||||||||| |||| || |||| |||| 
seq2  CCCAGTCAGGTGTGCATAAGAAAGCAAATGACCAAA-CACCAAGGCAAT-  1094

seq1  AGCAGCACTCCCCTGGGGGCTCTGCTTTGGTACTTAATTCCAGGTTCCTG  1146
      ||||||||||||||||||||| ||||||||||||||||| |||||  |||
seq2  AGCAGCACTCCCCTGGGGGCT-TGCTTTGGTACTTAATT-CAGGT--CTG  1140

seq1  TCTTGAGTTCCTTTCTTGGCTTCTCCAGTGATGAACTATAACCTGCAACC  1196
       |||   ||||||||| | ||  ||||| |||  ||| |||| |  ||  
seq2  GCTTAGATTCCTTTCTGGTCT--TCCAG-GATAGACT-TAACGTCAAA--  1184

seq1  CTAATAAACCCTTTCTTCCTCAAGTTGGTTCGGATCATGATGTTTCCTCA  1246
      |||||||   | ||||||       ||  |||||||  |  || ||| | 
seq2  CTAATAA---CCTTCTTC------ATGTGTCGGATC--GTAGTCTCCACG  1223

seq1  CAGCAGTAGACACATGGCTGAG-GC-AGGGGCCTTTTCTC-CATG  1288
       |     ||||| ||||||||| || ||||  |||||||| ||||
seq2  AA-----AGACA-ATGGCTGAGAGCGAGGGCTCTTTTCTCTCATG  1262

seq1: chr9_16356772_16358020
seq2: B6Ng01-124M10.g_66_1265 (reverse)

seq1  GATCACAGGGCCCCCAATGGAGGAGCTAGAGAAAGTAACCAAGGAGCTAA  50
      ||||| ||||||||  |||||||||||||   ||||   ||||   || |
seq2  GATCAGAGGGCCCCACATGGAGGAGCTAG---AAGTTTACAAG--ACTCA  45

seq1  AGGGGTCTGCAACCCTATAGGTGGAACAACAATATGAACTAACAAGTACC  100
       |||   |  |||    |||   |||| |||||||| ||| |||||||||
seq2  TGGG---TCGAAC---TTAG--TGAAC-ACAATATG-ACTCACAAGTACC  85

seq1  CCGGAGCTTGTGTC-TCTAGCT-ACATATGTATCAGAAGATGACCTAGT-  147
         |||| |||||| ||||||| |||| ||   ||| |||   |||||| 
seq2  ---GAGC-TGTGTCTTCTAGCTAACAT-TGATACAG-AGA--GCCTAGTG  127

seq1  CGGCCATCAGTGGAAAGAGAGGCCCATTGGTCTCACAATCTTTATATGCC  197
        ||||||| ||  ||||| |||||||  || |||||||||| ||||  |
seq2  TCGCCATCA-TGTGAAGAG-GGCCCAT--GTTTCACAATCTTAATAT--C  171

seq1  TCAGTACAGGGGAATGCTAGGGCCAAGAAGTGGGAGTGGGGGGAGGGTTT  247
      ||||||||||   ||||||   ||||| ||||||||| ||||||||  ||
seq2  TCAGTACAGG---ATGCTA--CCCAAG-AGTGGGAGT-GGGGGAGG--TT  212

seq1  GGGGGACTTTTGGGGTAGCATTGGAAATGTAAATGAAGAAAATACCTAAT  297
       ||||||||   |||||||||||| |||||||||   || |||| |||||
seq2  TGGGGACTT---GGGTAGCATTGG-AATGTAAAT---GAGAATA-CTAAT  254

seq1  TAAAAAAAGGAATGAAATTTAAAAATAAAAAAATGAAATTCATTCAAAGA  347
        |||||||  |||||||||||||||  ||||||||||||||||||||||
seq2  --AAAAAAG--ATGAAATTTAAAAAT--AAAAATGAAATTCATTCAAAGA  298

seq1  GGAAACTTTAAATATTTTGCGATATTTACTTACATAGTGCACATTATGTG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTTTAAATATTTTGCGATATTTACTTACATAGTGCACATTATGTG  348

seq1  TATAAATATTTTCCATGTGTGAGAAAGTATGATTCAGAGTAAATTCTATC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAATATTTTCCATGTGTGAGAAAGTATGATTCAGAGTAAATTCTATC  398

seq1  GATTCAAGAAAATCTTTTCACAAAAAGCAACCTTCCCATAAAGGAGATAA  497
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GATTCAAGAAAATCTTTTCACAAAAAGCAACCTTCCCATAAAGGAGAT-A  447

seq1  TTAGAATGCAGAGCCAAGGGAACAGAGCCTGTAGATCCTCAGTGAGAGCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGCAGAGCCAAGGGAACAGAGCCTGTAGATCCTCAGTGAGAGCT  497

seq1  CATGACACTGAAGTCTGCCCTTCACCTGCTG-AACACAGGGGAAGGCAGA  596
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CATGACACTGAAGTCTGCCCTTCACCTGCTGAAACACAGGGGAAGGCAGA  547

seq1  CACTTGTTTCCAATATGGTGTTGGCCCCACCAATGCCAAAGGAGTGCTGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTTTCCAATATGGTGTTGGCCCCACCAATGCCAAAGGAGTGCTGG  597

seq1  GAGTCTGAGGTTTGCATTCTGTGATTAAAGTGCTCTCATTTGAACACTTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGAGGTTTGCATTCTGTGATTAAAGTGCTCTCATTTGAACACTTG  647

seq1  TGCATAAGATGGTTTTTAAGGAAGATCAGAAATCAAGTTACCCTGGAGGA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATAAGATGGTTTTTAAGGAAGATCAGAAATCAAGTTACCCTGGAGGA  697

seq1  ATTTTGTTTTTCTTGTTAAGCAGCTGCTCACAGGCCTGCAATCTTTAATA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTTTTCTTGTTAAGCAGCTGCTCACAGGCCTGCAATCTTTAATA  747

seq1  AGCCACAGCACCAGGGAAATGTTACAGACAGGGATGTATCCTGTCCATCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACAGCACCAGGGAAATGTTACAGACAGGGATGTATCCTGTCCATCA  797

seq1  CAGCTTAGATTGGTTTGGCAAAGAATTCAAATGATTTGGAAAATTCCAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAGATTGGTTTGGCAAAGAATTCAAATGATTTGGAAAATTCCAGA  847

seq1  ACTAGCTTGATGTCAGGATGTTAGGAAACACATTATGCTGAGGCCAAAGA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGCTTGATGTCAGGATGTTAGGAAACACATTATGCTGAGGCCAAAGA  897

seq1  GGTGACTTTGAATCTCTGGGGATAGTCAATTACCCAACTGAACTATACAT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGACTTTGAATCTCTGGGGATAGTCAATTACCCAACTGAACTATACAT  947

seq1  GTTTTATTCAACACACTATCTTAAACCCTCAGAGAGGCACATTGAGAATT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTCAACACACTATCTTAAACCCTCAGAGAGGCACATTGAGAATT  997

seq1  ATATACAGCACAGTGTCTGTTCTGAAAGACCTGATAACTTAGCTGAAGAA  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGCACAGTGTCTGTTCTGAAAGACCTGATAACTTAGCTGAAGAA  1047

seq1  AACTCAGAAATGCACGAAAAATGAGCAGAACAAGACAGTGGGTGTGAATG  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGAAATGCACGAAAAATGAGCAGAACAAGACAGTGGGTGTGAATG  1097

seq1  TGCCCAATGTGAAGCAGATGTAAATGTTAACAGAGAGCTATGGATGGGCT  1196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCAATGTGAAGCAGATGTAAATGTTAACAGAGAGCTATGGATGGGCT  1147

seq1  AGTGTTCTTTAAGTCAACAAAAAGATCTGGATGACTTGGACAACAGAGAA  1246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTCTTTAAGTCAACAAAAAGATCTGGATGACTTGGACAACAGAGAA  1197

seq1  TTC  1249
      |||
seq2  TTC  1200